Gene AFE_0344 details

Gene Information

• Locus tag: AFE_0344
• Symbol: rpsE
• ID: 7136427
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 300279
• End bp: 300809
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643528756
• Product: 30S ribosomal protein S5
• Protein accession: YP_002424847
• Protein GI: 218665369
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.327612
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCACGGG AAAATCGCGA TACGCAGCCC AATGACGGAA TGCAGGAAAA ATTAATTCAT 
ATCAACCGCG TTTCCAAGGT GGTCAAAGGT GGGCGGCAGT TTGGTTTCGC GGCGCTCATG 
GTCGTGGGGG ACGGTGATGG AAAGGTCGGC TTTGGCCGCG GAAAGGCCAA AGAAGTCCCC 
GCAGGCATTC AAAAAGCTAC CGACCAGGCC CGCCGGTGGA TGACGAGCAT ACCACTGATG 
CGGGGTGGCA CGATTCCCTA CCCGGTAGAG GGTCGTCACG GCGCAGCGCG GGTGATGTTG 
CGGCCAGCGC CCGAAGGTAG CGGTGTAATT GCGGGTGGCG CGATGCGTGC GGTTTGCGAG 
GCGGTAGGTT TGCGTAATGT GGTCGCCAAG TCGCTGGGCT CCAACAACCC CATCAATGTG 
GTTCGGGCGA CCTTTGATGC CTTCGACAAA CTGATCAGCC CCCAGGCGAT CGCGATGAAA 
CGTGGTAAAA GCCTTAAGGA GATTCGCGGG CAAGGAGGAC ACGATGAGTA A 

 

Protein sequence

MARENRDTQP NDGMQEKLIH INRVSKVVKG GRQFGFAALM VVGDGDGKVG FGRGKAKEVP 
AGIQKATDQA RRWMTSIPLM RGGTIPYPVE GRHGAARVML RPAPEGSGVI AGGAMRAVCE 
AVGLRNVVAK SLGSNNPINV VRATFDAFDK LISPQAIAMK RGKSLKEIRG QGGHDE