Gene A9601_16891 details

Gene Information

• Locus tag: A9601_16891
• Symbol: rpoB
• ID: 4718419
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. AS9601
• Kingdom: Bacteria
• Replicon accession: NC_008816
• Strand: -
• Start bp: 1430197
• End bp: 1433490
• Gene Length: 3294 bp
• Protein Length: 1097 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 640079415
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_001010079
• Protein GI: 123969221
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAGTA GCGCTTTACA GGTAGCAAAA ACAGCTACTT ATCTACCAGA TTTAGTTGAA 
GTACAAAGAG CAAGCTTTAA ATGGTTTTTG GAAAAGGGTT TAATAGAAGA ACTACAAAAT 
TTTTCTCCTA TTTCTGATTA CACAGGTAAA TTAGAATTAC ATTTTATCGG TGAGGAGTAC 
AGGTTAAAAA GACCTAGACA TGATGTTGAG GAAGCTAAGA GAAGAGATGC TACATTCGCA 
TCTCAGATGT ATGTAACTTG CAGGTTAATC AATAAAGAGA CAGGGGAAAT TAAAGAACAA 
GAGGTATTTA TTGGCGAATT ACCATTAATG ACTGAAAGAG GAACTTTTAT CATTAATGGC 
GCCGAAAGAG TTATTGTTAA TCAAATTGTT CGAAGTCCCG GAGTCTATTT CAAAGATGAA 
CTGGATAAAA ATGGTCGAAG AACTTACAAC GCTAACGTTA TTCCTAATAG AGGTGCATGG 
TTAAAATTTG AGACCGACAA AAATAATTTA CTTTATGTGA GAGTTGATAA AACTAGAAAA 
ATTAATGCTC ATGTTCTTAT GAGAGCAATG GGTCTTTCAG ATAATGATGT GGTTGATAAA 
CTTAGGCATC CTGAATTTTA TCAAAACTCA ATTGATTCAG CTAACGACGA GGGTATAAAT 
TCAGAAGATC AGGCATTACT TGAGCTGTAT AAGAAGCTTC GTCCTGGTGA ACCGCCCTCT 
GTGTCTGGTG GACAACAACT ATTAAATAGT AGATTTTTTG ATCCTAAAAG ATATGATTTA 
GGCCGAGTTG GTAGATATAA AATAAATAAA AAATTGAGAC TAACCGTACC AGACGATGTG 
AGAACACTTA CCCATGAAGA TGTTCTATCT ACCATTGATT ATTTAATTAA CCTAGAATTG 
GATATTGGTG GAGCTAGTTT GGATGATATT GACCATCTTG GTAATCGAAG GGTTAGATCT 
GTAGGAGAAC TTCTTCAAAA TCAAGTCAGG GTTGGGCTTA ATCGGTTAGA GAGAATTATC 
AAAGAAAGAA TGACTGTAGG AGAAACAGAT TCTTTAACTC CTGCTCAACT AGTCAATCCA 
AAACCTTTGG TCGCTGCTAT AAAGGAATTT TTTGGTTCCA GTCAATTAAG TCAGTTCATG 
GATCAAACTA ATCCTTTAGC TGAATTAACA CATAAAAGAA GAATCTCTGC ATTAGGTCCA 
GGAGGTTTAA CTAGAGAAAG AGCAGGCTTT GCGGTAAGAG ATATACACCC TTCACATTAC 
GGTAGATTAT GCCCAATCGA GACTCCTGAA GGTCCTAATG CAGGACTTAT AAATTCTTTA 
GCTACCCACG CAAGAGTTAA TGAGTATGGT TTTATTGAAA CACCTTTTTG GGAAGTTAAA 
AACGGTAAAG TTAATAAAGA AGGTAATCCT GTTTATCTTT CTGCTGATTT AGAAGATGAG 
TGTAGAGTGG CTCCAGGTGA CGTCGCAACT GATAAGGATG GCAATATAAT TGCAGATTTA 
ATACCAGTAA GATATAGACA GGATTTTGAA AAAGTACCTC CTCATCAAGT TGATTACGTT 
CAGCTTTCTC CTGTTCAGGT AATTTCAGTT GCTACTTCAC TTATTCCTTT CTTGGAACAT 
GATGATGCTA ATAGAGCTCT TATGGGATCG AATATGCAAC GCCAAGCGGT TCCATTGCTC 
AGGCCAGAAC GGCCTTTAGT TGGTACAGGT TTAGAATCTC AAGTTGCTAG AGATTCGGGT 
ATGGTTCCCA TAACAAAAGT TAATGGAACT GTATCTTACG TAGACGCTAA TGAGATTGTC 
GTTAAAGACG ATCATGGCAA TGAACATTTT CATTATCTTC AGAAATATCA AAGATCAAAT 
CAAGATACTT GCCTCAACCA AAGACCCATA GTGAAAATTG GAGATAAAGT GATATCGGGT 
CAGGTTTTAG CAGATGGATC TGCATGTGAA GGTGGTGAAA TAGCCCTTGG CCAAAACGTT 
TTAATTGCTT ACATGCCATG GGAGGGGTAC AACTACGAAG ATGCGATACT TGTAAGCGAG 
AGGATGGTAA CTGATGATTT ATATACTTCA GTACATATTG AAAAATATGA AATTGAAGCA 
AGACAAACGA AGCTAGGACC TGAAGAAATT ACGAGAGAGA TTCCTAACAT CTCGGAAGAA 
AGCTTGAATA ATCTTGATGA GATGGGAATT ATTAGGATTG GTGCTTTTGT TGAGAGTGGA 
GATATCCTTG TAGGAAAGGT GACACCTAAA GGTGAATCAG ATCAACCACC TGAAGAAAAA 
CTGTTAAGAG CTATTTTCGG TGAAAAGGCT CGAGATGTGA GAGACAATTC CCTTAGGGTA 
CCCAAAACTG AAAAGGGAAG AGTTTTAGAT GTTCGCATTT ACACTAGAGA ACAAGGAGAT 
GAATTACCTC CAGGGGCCAA CATGGTTGTT AGAGTGTATG TGGCTCAGAG AAGGAAAATT 
CAAGTAGGCG ATAAAATGGC TGGAAGGCAT GGAAATAAAG GGATTATTAG CAGAATTTTA 
CCAAGAGAAG ATATGCCTTA TTTACCTGAT GGAACGCCAG TAGATATAGT TCTTAACCCT 
TTAGGAGTTC CAAGTAGGAT GAATGTAGGT CAAGTTTTTG AATTATTGAT GGGTTGGGCA 
GCTGCCAACT TAAATTGCAG GGTTAAAGTT GTTCCATTTG ATGAAATGTA TGGAGCTGAA 
AAGTCACATC AAACTGTTCA AGCATTTTTA GAGGAAGCTT CAAAACAGCC AGGTAAAGCA 
TGGGTTTACA ATCCTGAGGA TCCTGGAAAG TTATTACTTA AAGATGGCAG AACAGGGGAA 
CCCTTCGATC AGCCAGTTGC TGTCGGATAC TCTCACTTCC TCAAATTAGT TCATTTGGTG 
GATGATAAAA TTCATGCTAG ATCTACTGGT CCTTACTCTT TAGTTACACA GCAACCATTG 
GGTGGTAAAG CACAACAAGG TGGACAAAGG CTTGGAGAAA TGGAAGTATG GGCTCTTGAA 
GCTTATGGAG CTGCTTATAC TCTTCAGGAA TTGTTAACAG TTAAATCTGA TGACATGCAA 
GGAAGAAATG AAGCTCTTAA TGCGATCGTA AAAGGTAAAC CGATCCCAAG GCCAGGTACT 
CCTGAGTCAT TTAAAGTTCT TATGAGGGAA TTACAATCTC TAGGCTTGGA TATAGGGGTT 
TATACAGATG AAGGAAAAGA GGTAGATTTA ATGCAAGATA TCAATCCGAG AAGAAATACT 
CCATCAAGGC CTACTTACGA ATCACTAGGA ACCTCTGAAT ATGAGGAAGA TTAA 

 

Protein sequence

MSSSALQVAK TATYLPDLVE VQRASFKWFL EKGLIEELQN FSPISDYTGK LELHFIGEEY 
RLKRPRHDVE EAKRRDATFA SQMYVTCRLI NKETGEIKEQ EVFIGELPLM TERGTFIING 
AERVIVNQIV RSPGVYFKDE LDKNGRRTYN ANVIPNRGAW LKFETDKNNL LYVRVDKTRK 
INAHVLMRAM GLSDNDVVDK LRHPEFYQNS IDSANDEGIN SEDQALLELY KKLRPGEPPS 
VSGGQQLLNS RFFDPKRYDL GRVGRYKINK KLRLTVPDDV RTLTHEDVLS TIDYLINLEL 
DIGGASLDDI DHLGNRRVRS VGELLQNQVR VGLNRLERII KERMTVGETD SLTPAQLVNP 
KPLVAAIKEF FGSSQLSQFM DQTNPLAELT HKRRISALGP GGLTRERAGF AVRDIHPSHY 
GRLCPIETPE GPNAGLINSL ATHARVNEYG FIETPFWEVK NGKVNKEGNP VYLSADLEDE 
CRVAPGDVAT DKDGNIIADL IPVRYRQDFE KVPPHQVDYV QLSPVQVISV ATSLIPFLEH 
DDANRALMGS NMQRQAVPLL RPERPLVGTG LESQVARDSG MVPITKVNGT VSYVDANEIV 
VKDDHGNEHF HYLQKYQRSN QDTCLNQRPI VKIGDKVISG QVLADGSACE GGEIALGQNV 
LIAYMPWEGY NYEDAILVSE RMVTDDLYTS VHIEKYEIEA RQTKLGPEEI TREIPNISEE 
SLNNLDEMGI IRIGAFVESG DILVGKVTPK GESDQPPEEK LLRAIFGEKA RDVRDNSLRV 
PKTEKGRVLD VRIYTREQGD ELPPGANMVV RVYVAQRRKI QVGDKMAGRH GNKGIISRIL 
PREDMPYLPD GTPVDIVLNP LGVPSRMNVG QVFELLMGWA AANLNCRVKV VPFDEMYGAE 
KSHQTVQAFL EEASKQPGKA WVYNPEDPGK LLLKDGRTGE PFDQPVAVGY SHFLKLVHLV 
DDKIHARSTG PYSLVTQQPL GGKAQQGGQR LGEMEVWALE AYGAAYTLQE LLTVKSDDMQ 
GRNEALNAIV KGKPIPRPGT PESFKVLMRE LQSLGLDIGV YTDEGKEVDL MQDINPRRNT 
PSRPTYESLG TSEYEED