| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A9601_04601 |
|---|
| Symbol | rpsD |
|---|
| ID | 4717158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. AS9601 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008816 |
|---|
| Strand | - |
|---|
| Start bp | 401169 |
|---|
| End bp | 401777 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640078172 |
|---|
| Product | 30S ribosomal protein S4 |
|---|
| Protein accession | YP_001008855 |
|---|
| Protein GI | 123967997 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAGAT ACCGCGGCCC CAGATTAAGG GTTACGCGTC GCTTGGGAGA ACTACCAGGT
CTCACCAGGA AAGCTTCAAA GAAGTCTAAT CCTCCAGGTC AGCACGGCCA AGCCCGTCGC
AAGCGATCAG AATATGCAAT TCGTCTAGAA GAAAAGCAGA AACTTAGGTT TAATTATGGA
GTTTCTGAAA AACAACTAGT ACGTTATGTG AAAAAAGCTA GAGCTCAAGA AGGATCTACA
GGTACTAACC TACTAAGACT TTTAGAAAAC AGACTTGATA ATGTTTGTTT TAGATTGGGT
TTTGGAGGTA CCATTCCAGG CTCAAGACAA TTAGTAAATC ATGGCCATGT AACCGTTAAT
GGAAAGGTTC TTGATATTGC TGGTTATCAA TGCAAATCAG GCGATGTAAT CGGAATTAAA
GAAAACAAAG CAAGCAAAAA ACTTGTAGAA GGTAATATAG AATTCCCTGG CTTAGCAAAT
GTCCCACCTC ATCTTGATTT AGACAAGCCT AAATTAACGG GAAAAATAAA TGGGAAATGC
GATAGAGAGT GGGTGGCTCT TGAAATAAAC GAACTACTAG TTGTTGAATA TTATTCAAGA
AAAGTTTAA
|
|---|
| Protein sequence | MSRYRGPRLR VTRRLGELPG LTRKASKKSN PPGQHGQARR KRSEYAIRLE EKQKLRFNYG
VSEKQLVRYV KKARAQEGST GTNLLRLLEN RLDNVCFRLG FGGTIPGSRQ LVNHGHVTVN
GKVLDIAGYQ CKSGDVIGIK ENKASKKLVE GNIEFPGLAN VPPHLDLDKP KLTGKINGKC
DREWVALEIN ELLVVEYYSR KV
|
|---|
| |