| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A2cp1_4320 |
|---|
| Symbol | |
|---|
| ID | 7298395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaeromyxobacter dehalogenans 2CP-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011891 |
|---|
| Strand | - |
|---|
| Start bp | 4813497 |
|---|
| End bp | 4815002 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643597126 |
|---|
| Product | RNA polymerase, sigma 54 subunit, RpoN |
|---|
| Protein accession | YP_002494703 |
|---|
| Protein GI | 220919399 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.757017 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTCG AGCTGAAGCA GCACCTCAAG ATGACCCAGC AGCTGGTGAT GACGCCCCAG
CTGCAGCAGG CCATCAAGCT CCTGCAGCTC TCGCGCATGG AGCTGGTCGA TCTCATCCGC
ACCGAGATGA CCGAGAACCC CATGCTGGAG GGGGCGGACG AGAACGACGA GCAGGCGGTG
CCCGACGGCG CCAGCCCCGC CGAGCAGGCC GAGATCGAGG CGAAGCCCGA GCACAAGGAG
GCGGAAAAGG CCGAGGAGGT GAAGGGCGAG GAGGGCGCGA ACGAGATCGA CTGGGACCAG
TACCTCGACC AGTACCAGCT CCAGGGCCAC ACCGCGCCCT CCAACCGCGG CCTCTCCGAC
GAGGAGCTGC CCGGCTACGA GGCCACGCTC ACCAAGAAGA CCGACCTCGT CGACCACCTG
GTGTGGCAGC TGCGCCTCTC GAACTTCACG CCCGACGAGG AGCAGGTCGC GATGCTCATC
ATCGGGAACC TCGACGACGA CGGCTACTTC AAGATGCCGG CGGTGGAGGG CGAGGCCGAC
GAGGCCACCT CGCGCGATCC GCTGGTGCGG GTGGCGTTCG AGTCGGGGCA GGGCATCGAG
GTCGCCGAGC GGGTGCTGCG GAAGGTGCAG ACCTTCGACC CGATCGGCGT CGCCGCCCGC
GACCTGCGCG AGTGCCTGCT GATCCAGGTG GTCGCGATCA ACGCCGACAC GCCCGAGATC
GTCGCGATCA TCGAGCGCCA CCTGAAGCAC CTCGAGTCGA AGAACTACCA GGCCATCGCC
AAGGACCTGA AGGTTCCCAT CGAGGAGGTG GTGAAGGCGG TGAAGGTGAT CAGCCGCCTC
GAGCCGAAGC CGGGCCGCGC CTACTCCGGC GAGGAGGCGC AGTACATCAC CCCCGACGTC
TACGTCCACA AGATGGGCGA CAAGTACGTC ACCGTCCTCA ACGACGACGG CCTCTCGAAG
CTGCGCATCT CCGGCATGTA CCGCGCCGCG CTCAAGAACG GCGAGGCGGG CAAGGCCAAG
GAGTACATCC AGGAGAAGCT GCGCAGCGCG GTGTGGCTCA TCCGGTCCAT CCACCAGCGG
CAGCGGACCA TCTACAAGGT CACCGAGTCG ATCGTGAAGT TCCAGCGCGA CTTCCTCGAC
AAGGGGATCG CCCACCTGAA GCCGCTCATC CTGCGAGACG TGGCCGAGGA CATCGGGATG
CACGAGTCCA CCGTCTCGCG CGTCACCACG AACAAGTACG TCCACACGCC GCAGGGCATC
TACGAGCTGA AGTTCTTCTT CAACTCGGCG ATCCAGAAGA CCGGCGGCGA CGAGATCGCG
AGCGAGGCGG TGAAGAACCA CATCCGCCAG ATCGTCGCGG CCGAGGACCC GAAGCACCCG
CACTCCGACC AGAAGATCGT CGAGCTCCTG AAGGGCCAGA ACATCGAGAT CGCCCGCCGC
ACCGTCGCGA AGTACCGCGA GGTGCTGGGG ATCCTGCCCA GCTCGAAGCG CAAGAAGTAC
TTCTAG
|
|---|
| Protein sequence | MSLELKQHLK MTQQLVMTPQ LQQAIKLLQL SRMELVDLIR TEMTENPMLE GADENDEQAV
PDGASPAEQA EIEAKPEHKE AEKAEEVKGE EGANEIDWDQ YLDQYQLQGH TAPSNRGLSD
EELPGYEATL TKKTDLVDHL VWQLRLSNFT PDEEQVAMLI IGNLDDDGYF KMPAVEGEAD
EATSRDPLVR VAFESGQGIE VAERVLRKVQ TFDPIGVAAR DLRECLLIQV VAINADTPEI
VAIIERHLKH LESKNYQAIA KDLKVPIEEV VKAVKVISRL EPKPGRAYSG EEAQYITPDV
YVHKMGDKYV TVLNDDGLSK LRISGMYRAA LKNGEAGKAK EYIQEKLRSA VWLIRSIHQR
QRTIYKVTES IVKFQRDFLD KGIAHLKPLI LRDVAEDIGM HESTVSRVTT NKYVHTPQGI
YELKFFFNSA IQKTGGDEIA SEAVKNHIRQ IVAAEDPKHP HSDQKIVELL KGQNIEIARR
TVAKYREVLG ILPSSKRKKY F
|
|---|
| |