Gene A2cp1_4124 details

Gene Information

• Locus tag: A2cp1_4124
• ID: 7297549
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Anaeromyxobacter dehalogenans 2CP-1
• Kingdom: Bacteria
• Replicon accession: NC_011891
• Strand: +
• Start bp: 4609907
• End bp: 4611796
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 643596931
• Product: TRAP dicarboxylate transporter, DctM subunit
• Protein accession: YP_002494508
• Protein GI: 220919204
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component; [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component
• TIGRFAM ID: [TIGR00786] TRAP transporter, DctM subunit

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.879078
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCCTCC GTGAGGGGTC AATCGACTTT CGCGTGACCG CCCCAACCAT CTCCAGCCAC 
GGCGATCCGG AAGCGCAGGG CACGCGCATC GAGCGCGGCC TCGTCACGTT CCTGCTCGTG 
ACGATGATCC TGCTGCCGGC CGCCTCCACC GTGTCGCGGC GCCTCCTCGG CCGGGAGCTG 
CCCGGCTCGG CCGTGCTCGC GCAGCACATC ACCCTCTGGG TGGGCTTCCT CGGAGCGATG 
CTCGCCACCG CGAGCGGACG CCACCTCGCC CTGTCCACGC TCGACGTCAT CCCGGTCGGC 
TGGCCCCGCA CCGCGGCCTG GTTCCTCGGC CAGGCCGTCT CCGCCGCGGT GACCGCGCTG 
CTCGCCTGGG CGTCGCTCGA GCTGGTCAAG GTGGAGTGGA CCGGCTTCGG CCAGGTCGCG 
TTCGGCATCA AGGTGGCCTG GAGCCAGCTG GTGATGCCGG TGGGCTTCGC GATCATGGCG 
CTGCGCTTCG CGTGGCGTGC CGGCGCGCCG TGCGAGTCCC TCCGCTGCTG GGGGCTGCGC 
GTCGCCGCCG CGCTGATCGC CGCGGGCGCC TTCCTGCTCG GCTCGGCCGT GCCCGGCCCC 
GCGCTCACCT GGATCCTGTC GATCCTGGTG CTGCTCGCGT TCCTGCTGGG CGCGCCGGTG 
TTCGTGGCCA TGGCAGGCCT CGCCATGGTC CTGTTCTTCC GCGACGCGGG CGATCCGATC 
GCCGTCGTCG CGGTCCCCAC CGCCACGTTC AACCTGGTCT CGTCGGCCAC GCTGCCCGCC 
ATCCCGCTGC TCACCGCGGC CGGCTACGTG CTCGCCGAGG GCGGCGCGGC GCGCCGGCTG 
GTGCGCGCGT ACAAGGGGAT CTTCGGGTGG ATGCCGGGCG GCGTCGCGGT GATGGCGACG 
TTCGTCTGCG CGCTGTTCAC CACCTTCACC GGCGCGTCCG GCGTCACCAT CCTCGCGCTG 
GGCGGCCTGC TGCTCCCGGC GCTGCTCGAG GACGGCTACC CGGAGGACTT CTCGGTCGGC 
CTGGTCACGG CGGCCGGCTC GCTGGGCCTG CTGTTCCCGC CCTCGCTGCC GGTGATCCTC 
TACGGCGTGG TGGCGCAGGC GCCCATCGAC CACCTGTTCA TCGGCGGCCT GGTGCCGGGC 
CTGCTCATGA TCGTCCTCGT GGCCGCGTAC GGCGTCCTCG TGGGCGTCCG CTCCCGCGCG 
CCGCGGCAGG CGTTCCACCC GCGCGAGGCG CTCGCCGCGC TGTGGGACGC GAAGTGGGAC 
CTCGGGCTCC CGACGCTCGT CGTCGTGGCG GTGGGGTCCG GGTTCGCCAC GGTGGTGGAG 
GCCGCCGCGC TCGCCGCCGC CTACGCGCTG GTGGTGGAGC TGCTGGTGTT CCGCTCGATC 
GGCCCGGTCC GCGACCTGCC GCGGGTGCTG GTCCACGCGT CCACGCTGGT CGGGAGCGTG 
GTGATCCTGC TCGGCACCGC GCTCGGCCTC ACCTCCTGGT TCGTGGACGC GGAGATCCCC 
ACCCGGCTGG TGGAGTGGAT GACGGCGCAC GTGCACTCGC CGGCGCTCTT CCTGCTCATG 
CTGAACGCGG TGCTGCTGGT GCTCGGCAGC GTGCTCGAGA TCTACTCGGC CATCGTGGTG 
CTGGCGCCGC TGGTCGCGCC GCTCGGCGTC GCGTACGGCA TCGAGCCCAT CCACCTCGGC 
GTGGTGTTCC TCGCGAACCT CGAGCTCGGG TTCCTGTTCC CGCCCATGGG GCTCAACCTG 
TTCCTGTCGG CCTCGCGGTT CAACAAGCCG CTGCCGTACC TGTACCGGAA GGCGTTCCCG 
TTCCTGCTCA TCATGAGCGC GGGCGTCCTC GCCATCACCT ACCTGCCGGC CATCACCACC 
GGCGTGGTGG AGCTGCTGGC GCGGGACTAG 

 

Protein sequence

MPLREGSIDF RVTAPTISSH GDPEAQGTRI ERGLVTFLLV TMILLPAAST VSRRLLGREL 
PGSAVLAQHI TLWVGFLGAM LATASGRHLA LSTLDVIPVG WPRTAAWFLG QAVSAAVTAL 
LAWASLELVK VEWTGFGQVA FGIKVAWSQL VMPVGFAIMA LRFAWRAGAP CESLRCWGLR 
VAAALIAAGA FLLGSAVPGP ALTWILSILV LLAFLLGAPV FVAMAGLAMV LFFRDAGDPI 
AVVAVPTATF NLVSSATLPA IPLLTAAGYV LAEGGAARRL VRAYKGIFGW MPGGVAVMAT 
FVCALFTTFT GASGVTILAL GGLLLPALLE DGYPEDFSVG LVTAAGSLGL LFPPSLPVIL 
YGVVAQAPID HLFIGGLVPG LLMIVLVAAY GVLVGVRSRA PRQAFHPREA LAALWDAKWD 
LGLPTLVVVA VGSGFATVVE AAALAAAYAL VVELLVFRSI GPVRDLPRVL VHASTLVGSV 
VILLGTALGL TSWFVDAEIP TRLVEWMTAH VHSPALFLLM LNAVLLVLGS VLEIYSAIVV 
LAPLVAPLGV AYGIEPIHLG VVFLANLELG FLFPPMGLNL FLSASRFNKP LPYLYRKAFP 
FLLIMSAGVL AITYLPAITT GVVELLARD