| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A2cp1_3784 |
|---|
| Symbol | |
|---|
| ID | 7296160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaeromyxobacter dehalogenans 2CP-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011891 |
|---|
| Strand | + |
|---|
| Start bp | 4203611 |
|---|
| End bp | 4204657 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | 643596594 |
|---|
| Product | tRNA pseudouridine synthase D TruD |
|---|
| Protein accession | YP_002494174 |
|---|
| Protein GI | 220918870 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0585] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC TCCCCTTCGT CACCGCCGAC CTGCCCGGCT CCGGAGGCGC GCTGCGCCGC
GCCCCCGAGG ACTTCCGGGT GGACGAGGTG CCCGCCTACC TGCCGTCCGG CGCGGGCCCG
CACCTGTACC TCCGCGTGGA GAAGCGCGGG CGCACCTCCC GCGACGCGGT GCGCGAGCTG
GCGCGGGCGC TGGGCGTGCC CGAGCGCGAC GCCGGCTGCG CCGGGCTGAA GGACAAGGAC
GCGGTCACCA CGCAGTGGCT CTCGTTCCCG GTGGCGCGCG ATCCCGACCC GGCCGCGCTC
GCCGCGCCGG GCCTGCGCGT GCTGGAGGCC TCGCGCCACC AGAACAAGCT CCGCACCGGC
CACGTGCGCG CGAACCGCTT CACGCTGGCG GTGCGCGGCG GCGATCTGGG GCGGGCCCGG
GAGTGCGCCG GCGCGCTCGC GGCGCGGGGG CTCCCCAACT TCTTCGGGCC GCAGCGCTTC
GGCGCCGCCG GGCGCAACGC GGCGGTGGGG CGCGCGCTCG TCACCGGCGA GCGGACCCCG
GAGGCCGGCC GCGCCGCGCG GGATCGCTTC CTGCGCCGGC TCTCGCTCTC CGCCTACCAG
TCGCTCCTGT TCAATCGCTG GCTGGCGGAG CGGATGGCGG ACGGGCTGTT CGCGGCGGCG
CTGGCCGGCG ACGCGATGAA GAAGCTCGAC ACCGGCGGGC TGTTCACCTG CGAGGACCCC
GCCGCGGACG GGCCGCGGGT GGAGCGGTTC GAGATCTCGC CGGCCGGCCC GATGTTCGGG
CACGCGCTGC GCCTGGCGGC CGGCGAGGCC GGGGCCCGCG AGGCGCGGCT GCTCGAGGCC
GAGGGGATCG CGCTCGCCGA CTTCGCGCGC GGCGGCGGCG AGGCCGAGGG CACCCGCCGC
GCGGCGCGGC TGCGGGTGGA GGTCGCGCTC GAGCCGCTGG AGGACGGGTA CCGGGCGGCG
TTCGAGCTGC CCCGCGGCGC GTACGCCACC GTGGTCATGC GCGAGCTGAC CAAGGGCGAG
GCGGAGCTGC CCGAGGACGC AGACTGA
|
|---|
| Protein sequence | MTDLPFVTAD LPGSGGALRR APEDFRVDEV PAYLPSGAGP HLYLRVEKRG RTSRDAVREL
ARALGVPERD AGCAGLKDKD AVTTQWLSFP VARDPDPAAL AAPGLRVLEA SRHQNKLRTG
HVRANRFTLA VRGGDLGRAR ECAGALAARG LPNFFGPQRF GAAGRNAAVG RALVTGERTP
EAGRAARDRF LRRLSLSAYQ SLLFNRWLAE RMADGLFAAA LAGDAMKKLD TGGLFTCEDP
AADGPRVERF EISPAGPMFG HALRLAAGEA GAREARLLEA EGIALADFAR GGGEAEGTRR
AARLRVEVAL EPLEDGYRAA FELPRGAYAT VVMRELTKGE AELPEDAD
|
|---|
| |