| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A2cp1_2749 |
|---|
| Symbol | |
|---|
| ID | 7298817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaeromyxobacter dehalogenans 2CP-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011891 |
|---|
| Strand | + |
|---|
| Start bp | 3030734 |
|---|
| End bp | 3032566 |
|---|
| Gene Length | 1833 bp |
|---|
| Protein Length | 610 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 643595553 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_002493152 |
|---|
| Protein GI | 220917848 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGCT CTCCACGACG CCCCGTCCGG CTGGCTGCCC TCGCCGTCGC GCTCGTCGCG
GTCCTCCCCT ACCTCCACAC GCTGCGACAC GGGTTCGCGT ACGACGACCG CGTCGAGGTC
GTCGAGAACG CGTACCTCCG CGGCGTCGAG GGGGTACCGG CTATCCTCTC CCATCGCGAC
TGGGCAGGAT CGGGCAAGGG GTCCGCCACC TACCGGCCGC TCACCACCCT CTCCTTCGCC
CTGAATCACG CGGTCCACGG GCTCGCCCCG TCGGGCTATC ACCTCGTCAA CCTGCTGCTC
CACGCGGCCG TTTCCGTCCT GGTGCTCGGG CTCGCGCTCG GGCTCGGGCT CCCCCTGGCG
GCCGCCACGC TGGCCGGCCT GCTCTTCGCG GTCCACCCCA TCCACGTGGA GGCGGTGGCG
AACGTGGCCG GGCGCAAGGA GCTCCTGGTC ACCGCCTTCA CCCTGGGTGC CGTGCTCCTC
CACCCGGTCG CGCTCCGCCG CGGAGGCCTC CGACTCGTCG CCGCGCCGCT GCTCGGCGCG
CTGGCGGCCT TCTCCAAGGA GACCGGGCTC GTCCTGATCG GCCTGATCGT CGCGCTCGAC
CTGCTCTTCC GCCGCGCCGA GGTCCGCGCC GCACCGCGCC GCGCGGCCAC GCTCTACGCG
TCCTACCTCG CGGCCGCCGG CGCCTACCTC GCCGCCCGCT GGGCCGTGCT GGGAAGCCTG
GGTATGCCGG GCACGATCTT CCTGGTGAAC CCGATCGCCG ATGCACCGCT CCTCGAGCGG
ATCGCGACCG CGCTGGTCGT GCTCGGGAAG GGCCTCCAGC TCTCGATCGC GCCGGCCACG
CTGTCGCCCG ACTACTCGTA CGCCGCGATC CCGCCGGTTG CCTCCGCCCT CGACCCGCGC
CTGGCCCTGG CGGTCGCCGC GCTCGCAGGC GCGGCCGCGT TCGCTGCTTG GCCCGGGCGG
CGCCGGCGCG TGCGGCTCGC CGCGGCGGCC ATCTACGCCT TCGGCGTCTT CCCCGCGTCG
AACCTGCTCG TCCCCATCGG GACGATCTTC GGGGAACGGC TGCTTTACCT CCCCAGCGTC
GGCTTCGTCC TCGGGGTCGC CGCGGTGATG GCCACCGTCC TCGAGGGACC GCGCCGCGTA
GCGCTCCGCA CGATCACCGG GGTCGCGCTC GCGCTGCTGG CGGTCCGCGG CGCGTGGTAC
GCACGGGCCT GGTCGAACAG CCTCTCCATC TTTGCCGAGG GCGTGCGGGT CCAGCCGGCC
TCGGCCCAGA TGCAGCTCAC CTATGGCGCG CAGTTGCTCG GGCGCAAGGA GATGGCCGGA
GCGGCCGCCG CCTTCGCGCG CGCGGCGGAG ATCCTGGCCG TGCGGCCCGA CGCCCAGTCG
GACGCCCTGG TGCAGCTCGG GGTCGCCTAT GAGCAGCTCG GCCGGGCCGA GGAGGCGGAG
CAGCTGTACG CCCGCGTCCT CGCGCGGGAA CACCGCCATC CGGACGCGCT GTGGCGGATG
GGCGTCCGGC GCTGGGCCCA GGGGGATCCA CCGGGCGCCG TCCAGCTCTG GGAGCGAGCG
ATCGCGGCCG AGCCGCGGCA CGCCCCCGCG CTCTCGGACC TCGGCTTGGC CGCCTACGCC
GCCGGCGATC TCCAGGGCGC CGAGGCGCGC TTCCGCGAGG CTGCGGCGAT CGCGCCGACG
CTGCCGGGGG TCTGGTACAA GCTCGGCGTG GTCTGCGAGC AGCTGGGGCG CCGCGAGGAG
GCGCTGGCCG CCTGGCGCCG CTTCCTCGAG CTCGCTCCGG AGCCTTCGCT CGAGCGAGAC
GAGATCGAGC GGCGTCTCGC CGCCAGTCCG TGA
|
|---|
| Protein sequence | MDRSPRRPVR LAALAVALVA VLPYLHTLRH GFAYDDRVEV VENAYLRGVE GVPAILSHRD
WAGSGKGSAT YRPLTTLSFA LNHAVHGLAP SGYHLVNLLL HAAVSVLVLG LALGLGLPLA
AATLAGLLFA VHPIHVEAVA NVAGRKELLV TAFTLGAVLL HPVALRRGGL RLVAAPLLGA
LAAFSKETGL VLIGLIVALD LLFRRAEVRA APRRAATLYA SYLAAAGAYL AARWAVLGSL
GMPGTIFLVN PIADAPLLER IATALVVLGK GLQLSIAPAT LSPDYSYAAI PPVASALDPR
LALAVAALAG AAAFAAWPGR RRRVRLAAAA IYAFGVFPAS NLLVPIGTIF GERLLYLPSV
GFVLGVAAVM ATVLEGPRRV ALRTITGVAL ALLAVRGAWY ARAWSNSLSI FAEGVRVQPA
SAQMQLTYGA QLLGRKEMAG AAAAFARAAE ILAVRPDAQS DALVQLGVAY EQLGRAEEAE
QLYARVLARE HRHPDALWRM GVRRWAQGDP PGAVQLWERA IAAEPRHAPA LSDLGLAAYA
AGDLQGAEAR FREAAAIAPT LPGVWYKLGV VCEQLGRREE ALAAWRRFLE LAPEPSLERD
EIERRLAASP
|
|---|
| |