64 Unclonable genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Pecwa_0002  CDS  NC_013421  1455  2555  1101  DNA polymerase III subunit beta  YP_003257478  unclonable  7.90466e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0323  CDS  NC_013421  358585  359976  1392  outer membrane channel protein  YP_003257783  unclonable  6.73159e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0787  CDS  NC_013421  836096  836566  471  arginine repressor  YP_003258213  unclonable  1.29579e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0788  CDS  NC_013421  837037  837972  936  malate dehydrogenase  YP_003258214  unclonable  5.0316e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0789  CDS  NC_013421  838036  838299  264  putative transcriptional regulator, Nlp  YP_003258215  unclonable  1.16057e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0790  CDS  NC_013421  838488  838874  387  MuA-transposase/repressor protein CI DNA-binding protein  YP_003258216  unclonable  1.63331e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0791  CDS  NC_013421  839123  839497  375  MuA-transposase/repressor protein CI DNA-binding protein  YP_003258217  unclonable  1.68449e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0792  CDS  NC_013421  839569  840540  972  octaprenyl diphosphate synthase  YP_003258218  unclonable  4.11512e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_0801  CDS  NC_013421  847364  849319  1956  ATP-dependent metalloprotease FtsH  YP_003258227  unclonable  2.53513e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_1015  CDS  NC_013421  1096499  1097521  1023  cell division protein ZipA  YP_003258439  unclonable  5.90844e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_1198  CDS  NC_013421  1297312  1297887  576  RNA polymerase sigma factor RpoE  YP_003258619  unclonable  1.52256e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_1199  CDS  NC_013421  1297947  1298594  648  anti-RNA polymerase sigma factor SigE  YP_003258620  unclonable  1.99919e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2112  CDS  NC_013421  2301751  2303076  1326  hypothetical protein  YP_003259494  unclonable  1.1239e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2212  CDS  NC_013421  2404570  2404686  117  hypothetical protein  YP_003259589  unclonable  5.69012e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2232  CDS  NC_013421  2423583  2424707  1125  ribonuclease D  YP_003259609  unclonable  1.42967e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2233  CDS  NC_013421  2424876  2425106  231  hypothetical protein  YP_003259610  unclonable  1.97888e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2234  CDS  NC_013421  2425321  2425590  270  cell division topological specificity factor MinE  YP_003259611  unclonable  2.01972e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2235  CDS  NC_013421  2425594  2426406  813  cell division inhibitor MinD  YP_003259612  unclonable  5.61907e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2236  CDS  NC_013421  2426427  2427113  687  septum formation inhibitor  YP_003259613  unclonable  3.99265e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2237  CDS  NC_013421  2427250  2427507  258  protein of unknown function DUF709  YP_003259614  unclonable  1.63331e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2238  CDS  NC_013421  2427851  2428507  657  hypothetical protein  YP_003259615  unclonable  3.04661e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2641  CDS  NC_013421  2889470  2890639  1170  tetratricopeptide repeat protein  YP_003260004  unclonable  5.90844e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2694  CDS  NC_013421  2948018  2952304  4287  YD repeat protein  YP_003260056  unclonable  0.00194911  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2745  CDS  NC_013421  3004944  3005180  237  LPP repeat-containing protein  YP_003260106  unclonable  7.53676e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2806  CDS  NC_013421  3071465  3072706  1242  3-oxoacyl-(acyl carrier protein) synthase II  YP_003260166  unclonable  4.50651e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2807  CDS  NC_013421  3072788  3073024  237  acyl carrier protein  YP_003260167  unclonable  8.75833e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2808  CDS  NC_013421  3073178  3073912  735  3-ketoacyl-(acyl-carrier-protein) reductase  YP_003260168  unclonable  2.27771e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2809  CDS  NC_013421  3073927  3074856  930  malonyl CoA-acyl carrier protein transacylase  YP_003260169  unclonable  4.15915e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2810  CDS  NC_013421  3074874  3075827  954  3-oxoacyl-(acyl carrier protein) synthase III  YP_003260170  unclonable  4.11512e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2811  CDS  NC_013421  3075834  3076880  1047  putative glycerol-3-phosphate acyltransferase PlsX  YP_003260171  unclonable  5.08326e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2812  CDS  NC_013421  3076910  3077080  171  50S ribosomal protein L32  YP_003260172  unclonable  7.38596e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2813  CDS  NC_013421  3077097  3077618  522  hypothetical protein  YP_003260173  unclonable  1.46224e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2857  CDS  NC_013421  3118482  3118988  507  SOS cell division inhibitor  YP_003260216  unclonable  5.46585e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2858  CDS  NC_013421  3119351  3120436  1086  outer membrane protein A  YP_003260217  unclonable  1.65079e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_2859  CDS  NC_013421  3120589  3121050  462  hypothetical protein  YP_003260218  unclonable  4.99435e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2860  CDS  NC_013421  3121227  3122996  1770  hypothetical protein  YP_003260219  unclonable  7.2938e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
-
 
Pecwa_2861  CDS  NC_013421  3123088  3123606  519  3-hydroxydecanoyl-(acyl carrier protein) dehydratase  YP_003260220  unclonable  7.16615e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3012  CDS  NC_013421  3280291  3280968  678  putative lipoprotein  YP_003260365  unclonable  2.8974e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3013  CDS  NC_013421  3281044  3281325  282  hypothetical protein  YP_003260366  unclonable  1.63331e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3086  CDS  NC_013421  3364477  3364986  510  peptidoglycan-associated outer membrane lipoprotein  YP_003260435  unclonable  1.03923e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3156  CDS  NC_013421  3441251  3442216  966  lipoyl synthase  YP_003260505  unclonable  4.11512e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3157  CDS  NC_013421  3442299  3442496  198  twin arginine translocase protein A  YP_003260506  unclonable  9.88339e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3158  CDS  NC_013421  3442973  3443356  384  CrcB protein  YP_003260507  unclonable  1.88116e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3159  CDS  NC_013421  3443420  3443629  210  cold shock protein CspE  YP_003260508  unclonable  1.39034e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3399  CDS  NC_013421  3735871  3736407  537  dinucleoside polyphosphate hydrolase  YP_003260744  unclonable  2.67349e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3548  CDS  NC_013421  3905060  3907297  2238  GDP/GTP pyrophosphokinase  YP_003260891  unclonable  4.88354e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3566  CDS  NC_013421  3933596  3934216  621  putative signal transduction protein  YP_003260909  unclonable  1.90048e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3586  CDS  NC_013421  3956185  3956319  135  hypothetical protein  YP_003260929  unclonable  9.68563e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3707  CDS  NC_013421  4081684  4083003  1320  type III effector Hrp-dependent outers  YP_003261049  unclonable  1.00596e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3774  CDS  NC_013421  4165289  4166221  933  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  YP_003261116  unclonable  7.74648e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3906  CDS  NC_013421  4314103  4314615  513  hypothetical protein  YP_003261244  unclonable  9.39538e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3907  CDS  NC_013421  4314712  4315410  699  Deoxyribonuclease I  YP_003261245  unclonable  1.39034e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_3908  CDS  NC_013421  4315526  4316260  735  16S ribosomal RNA methyltransferase RsmE  YP_003261246  unclonable  1.46224e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_4001  CDS  NC_013421  4409526  4410155  630  50S ribosomal protein L3  YP_003261338  unclonable  1.33554e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_4002  CDS  NC_013421  4410188  4410499  312  30S ribosomal protein S10  YP_003261339  unclonable  6.61379e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_4003  CDS  NC_013421  4410624  4410734  111  hypothetical protein  YP_003261340  unclonable  4.70251e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_4004  CDS  NC_013421  4410807  4411280  474  bacterioferritin  YP_003261341  unclonable  9.58722e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_4005  CDS  NC_013421  4411353  4411547  195  bacterioferritin-associated ferredoxin  YP_003261342  unclonable  5.74852e-07  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_4006  CDS  NC_013421  4411752  4412936  1185  translation elongation factor Tu  YP_003261343  unclonable  3.5404e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_4007  CDS  NC_013421  4413006  4415120  2115  elongation factor G  YP_003261344  unclonable  2.80538e-05  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_4008  CDS  NC_013421  4415217  4415687  471  30S ribosomal protein S7  YP_003261345  unclonable  1.90048e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_4009    NC_013421  4415700  4415810  111      unclonable  1.06045e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_4010  CDS  NC_013421  4415784  4416158  375  30S ribosomal protein S12  YP_003261346  unclonable  1.75361e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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Pecwa_4060    NC_013421  4469626  4470346  721      unclonable  2.86795e-06  n/a    Pectobacterium wasabiae WPP163  Bacteria 
 
 
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