19 Unclonable genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
TM1040_0574  CDS  NC_008044  612509  612883  375  RNA-binding S4  YP_612569  hitchhiker  4.75662e-07  unclonable  2.09736e-08  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_0575  CDS  NC_008044  612951  613289  339  4Fe-4S ferredoxin, iron-sulfur binding  YP_612570  hitchhiker  5.52011e-10  unclonable  2.11898e-08  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_0576  CDS  NC_008044  613567  614076  510  CarD family transcriptional regulator  YP_612571  unclonable  5.04519e-11  unclonable  2.18406e-08  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_0577  CDS  NC_008044  614143  614895  753  cobalamin-5'-phosphate synthase  YP_612572  hitchhiker  1.47618e-06  unclonable  2.41437e-08  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_0578  CDS  NC_008044  614997  616007  1011  nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase  YP_612573  hitchhiker  0.000265143  unclonable  2.51354e-08  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_0689  CDS  NC_008044  738085  739758  1674  cell division protein FtsZ  YP_612684  unclonable  1.08594e-08  decreased coverage  0.000313873  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_1148  CDS  NC_008044  1235783  1236388  606  pyridoxamine 5'-phosphate oxidase  YP_613143  unclonable  1.48678e-10  normal  0.197095  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_1149  CDS  NC_008044  1236516  1237055  540  cold-shock DNA-binding protein family protein  YP_613144  unclonable  1.07907e-10  normal  0.195461  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_1459  CDS  NC_008044  1557176  1560106  2931  RNAse E  YP_613454  unclonable  2.80055e-06  normal  0.379566  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_1602  CDS  NC_008044  1713369  1714235  867  hypothetical protein  YP_613597  unclonable  3.11697e-10  normal  0.653489  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2416  CDS  NC_008044  2556474  2558207  1734  extracellular solute-binding protein  YP_614410  unclonable  1.2875e-08  normal  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2566  CDS  NC_008044  2709220  2709573  354  DNA-directed RNA polymerase subunit omega  YP_614560  hitchhiker  3.89838e-06  unclonable  3.22827e-08  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2567  CDS  NC_008044  2709688  2710257  570  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase  YP_614561  hitchhiker  3.2951e-07  unclonable  3.36172e-08  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2568  CDS  NC_008044  2710393  2710962  570  hypothetical protein  YP_614562  unclonable  1.24155e-10  unclonable  3.64355e-08  Ruegeria sp. TM1040  Bacteria 
 
 
 
TM1040_2569  CDS  NC_008044  2711132  2712082  951  4-hydroxy-3-methylbut-2-enyl diphosphate reductase  YP_614563  hitchhiker  1.30157e-06  unclonable  4.49724e-08  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2570  CDS  NC_008044  2712248  2712865  618  lysine exporter protein LysE/YggA  YP_614564  hitchhiker  0.00200022  unclonable  4.06824e-08  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2571  CDS  NC_008044  2712865  2713323  459  hypothetical protein  YP_614565  hitchhiker  0.00137712  unclonable  3.26154e-08  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_2572  CDS  NC_008044  2713320  2713919  600  methyltransferase type 11  YP_614566  hitchhiker  0.00406147  unclonable  3.36172e-08  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3343  CDS  NC_008043  354019  354969  951  periplasmic binding protein/LacI transcriptional regulator  YP_611577  unclonable  3.31055e-10  normal  0.275562  Ruegeria sp. TM1040  Bacteria 
 
 
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