More than 300 homologs were found in PanDaTox collection
for query gene YPK_1801 on replicon NC_010465
Organism: Yersinia pseudotuberculosis YPIII



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009708  YpsIP31758_1691  oligogalacturonide ABC tansporter, permease protein  100 
 
 
296 aa  591  1e-168  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.041328  n/a   
 
 
-
 
NC_010465  YPK_1801  binding-protein-dependent transport systems inner membrane component  100 
 
 
296 aa  591  1e-168  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.780468  n/a   
 
 
-
 
NC_010159  YpAngola_A2645  oligogalacturonide ABC tansporter, permease  99.66 
 
 
296 aa  589  1e-167  Yersinia pestis Angola  Bacteria  normal  0.952468  normal  0.0439933 
 
 
-
 
NC_009436  Ent638_3289  binding-protein-dependent transport systems inner membrane component  93.9 
 
 
296 aa  557  1e-158  Enterobacter sp. 638  Bacteria  normal  normal  0.243021 
 
 
-
 
NC_012917  PC1_1907  binding-protein-dependent transport systems inner membrane component  92.54 
 
 
296 aa  551  1e-156  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0961638  n/a   
 
 
-
 
NC_012912  Dd1591_1969  binding-protein-dependent transport systems inner membrane component  91.86 
 
 
296 aa  549  1e-155  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2200  binding-protein-dependent transport systems inner membrane component  92.2 
 
 
296 aa  548  1e-155  Pectobacterium wasabiae WPP163  Bacteria  normal  0.467118  n/a   
 
 
-
 
NC_012880  Dd703_2034  binding-protein-dependent transport systems inner membrane component  90.85 
 
 
296 aa  545  1e-154  Dickeya dadantii Ech703  Bacteria  normal  0.963086  n/a   
 
 
-
 
NC_009654  Mmwyl1_0774  binding-protein-dependent transport systems inner membrane component  81.97 
 
 
293 aa  490  1e-137  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_0698  binding-protein-dependent transport systems inner membrane component  60.35 
 
 
293 aa  365  1e-100  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2375  binding-protein-dependent transport systems inner membrane component  53.26 
 
 
298 aa  343  2e-93  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_4049  binding-protein-dependent transport systems inner membrane component  57.29 
 
 
292 aa  336  2.9999999999999997e-91  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2080  binding-protein-dependent transport systems inner membrane component  48.81 
 
 
308 aa  298  1e-79  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.136718  n/a   
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  49.29 
 
 
305 aa  293  2e-78  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0620  binding-protein-dependent transport systems inner membrane component  47.52 
 
 
305 aa  292  4e-78  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000205165  n/a   
 
 
-
 
NC_013530  Xcel_2535  binding-protein-dependent transport systems inner membrane component  46.58 
 
 
314 aa  284  1.0000000000000001e-75  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0498  binding-protein-dependent transport systems inner membrane component  46.71 
 
 
317 aa  280  1e-74  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000449996 
 
 
-
 
NC_012669  Bcav_3898  binding-protein-dependent transport systems inner membrane component  45.14 
 
 
324 aa  280  3e-74  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  46.07 
 
 
314 aa  278  8e-74  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_011886  Achl_3130  binding-protein-dependent transport systems inner membrane component  46.43 
 
 
314 aa  278  8e-74  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00699527 
 
 
-
 
NC_010001  Cphy_3401  binding-protein-dependent transport systems inner membrane component  45.86 
 
 
305 aa  278  8e-74  Clostridium phytofermentans ISDg  Bacteria  normal  0.028536  n/a   
 
 
-
 
NC_009664  Krad_2143  binding-protein-dependent transport systems inner membrane component  46.42 
 
 
318 aa  277  1e-73  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5581  ABC transporter membrane spanning protein (galacturonic acid)  49.65 
 
 
314 aa  276  3e-73  Agrobacterium vitis S4  Bacteria  normal  0.512211  n/a   
 
 
-
 
NC_011369  Rleg2_4016  binding-protein-dependent transport systems inner membrane component  48.06 
 
 
319 aa  276  4e-73  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_3328  binding-protein-dependent transport systems inner membrane component  48.06 
 
 
318 aa  275  9e-73  Sinorhizobium medicae WSM419  Bacteria  normal  0.670475  normal  0.953703 
 
 
-
 
NC_012850  Rleg_4345  binding-protein-dependent transport systems inner membrane component  47.35 
 
 
319 aa  273  4.0000000000000004e-72  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.0000915897 
 
 
-
 
NC_011661  Dtur_0438  binding-protein-dependent transport systems inner membrane component  44.37 
 
 
302 aa  271  9e-72  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000597022  n/a   
 
 
-
 
NC_013530  Xcel_0898  binding-protein-dependent transport systems inner membrane component  44.06 
 
 
319 aa  268  5.9999999999999995e-71  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.14469  n/a   
 
 
-
 
NC_012669  Bcav_1533  binding-protein-dependent transport systems inner membrane component  45.45 
 
 
318 aa  268  1e-70  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.384041  normal  0.0165665 
 
 
-
 
NC_012669  Bcav_0920  binding-protein-dependent transport systems inner membrane component  49.49 
 
 
319 aa  264  2e-69  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  44.56 
 
 
316 aa  261  6.999999999999999e-69  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_29720  carbohydrate ABC transporter membrane protein  45.52 
 
 
312 aa  261  8.999999999999999e-69  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0971  binding-protein-dependent transport systems inner membrane component  44.98 
 
 
318 aa  261  1e-68  Actinosynnema mirum DSM 43827  Bacteria  normal  0.402329  n/a   
 
 
-
 
NC_013205  Aaci_2459  binding-protein-dependent transport systems inner membrane component  42.16 
 
 
331 aa  261  1e-68  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.216304  n/a   
 
 
-
 
NC_012669  Bcav_0801  binding-protein-dependent transport systems inner membrane component  44.68 
 
 
319 aa  259  3e-68  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.836257  decreased coverage  0.00115511 
 
 
-
 
NC_012669  Bcav_3555  binding-protein-dependent transport systems inner membrane component  45 
 
 
313 aa  256  2e-67  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.582328  normal  0.269585 
 
 
-
 
NC_009664  Krad_2230  binding-protein-dependent transport systems inner membrane component  45.91 
 
 
316 aa  256  2e-67  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_05250  carbohydrate ABC transporter membrane protein  45.71 
 
 
309 aa  256  4e-67  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_05430  carbohydrate ABC transporter membrane protein  43.79 
 
 
321 aa  254  9e-67  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0550121  normal 
 
 
-
 
NC_007333  Tfu_1704  putative transport system permease ABC transporter protein  45.2 
 
 
324 aa  253  2.0000000000000002e-66  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2034  binding-protein-dependent transport systems inner membrane component  43.6 
 
 
323 aa  254  2.0000000000000002e-66  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.059557  normal  0.598754 
 
 
-
 
NC_013530  Xcel_2648  binding-protein-dependent transport systems inner membrane component  44.83 
 
 
315 aa  253  2.0000000000000002e-66  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.604604  n/a   
 
 
-
 
NC_009664  Krad_0590  binding-protein-dependent transport systems inner membrane component  43.34 
 
 
322 aa  252  6e-66  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0414899  normal  0.0385996 
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  43.06 
 
 
309 aa  250  2e-65  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_009767  Rcas_3564  binding-protein-dependent transport systems inner membrane component  45.1 
 
 
316 aa  248  1e-64  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.264329 
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  42.46 
 
 
305 aa  244  9.999999999999999e-64  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2453  binding-protein-dependent transport systems inner membrane component  43.2 
 
 
314 aa  242  5e-63  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000200699  n/a   
 
 
-
 
NC_008541  Arth_3323  binding-protein-dependent transport systems inner membrane component  45.45 
 
 
317 aa  241  7.999999999999999e-63  Arthrobacter sp. FB24  Bacteria  normal  0.0473972  n/a   
 
 
-
 
NC_011886  Achl_3123  binding-protein-dependent transport systems inner membrane component  45.45 
 
 
317 aa  241  2e-62  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.205507 
 
 
-
 
NC_013526  Tter_2511  binding-protein-dependent transport systems inner membrane component  42.55 
 
 
317 aa  234  1.0000000000000001e-60  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.10809  n/a   
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  42.61 
 
 
313 aa  232  7.000000000000001e-60  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0792  binding-protein-dependent transport systems inner membrane component  43.57 
 
 
320 aa  230  2e-59  Beutenbergia cavernae DSM 12333  Bacteria  normal  hitchhiker  0.00615148 
 
 
-
 
NC_009767  Rcas_2545  binding-protein-dependent transport systems inner membrane component  41.64 
 
 
316 aa  228  1e-58  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.637107  normal  0.115222 
 
 
-
 
NC_009523  RoseRS_2819  binding-protein-dependent transport systems inner membrane component  41.99 
 
 
315 aa  227  2e-58  Roseiflexus sp. RS-1  Bacteria  normal  0.0308401  normal 
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  38.93 
 
 
321 aa  226  4e-58  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_012669  Bcav_0311  binding-protein-dependent transport systems inner membrane component  39.07 
 
 
321 aa  222  6e-57  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_0718  binding-protein-dependent transport systems inner membrane component  41.64 
 
 
319 aa  217  1e-55  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.491906  n/a   
 
 
-
 
NC_013526  Tter_2136  binding-protein-dependent transport systems inner membrane component  40.89 
 
 
307 aa  217  2e-55  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0263  binding-protein-dependent transport systems inner membrane component  39 
 
 
317 aa  217  2e-55  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2041  binding-protein-dependent transport systems inner membrane component  40.35 
 
 
305 aa  216  2.9999999999999998e-55  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00457854  n/a   
 
 
-
 
NC_009616  Tmel_1015  binding-protein-dependent transport systems inner membrane component  41.26 
 
 
292 aa  216  5e-55  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2506  binding-protein-dependent transport systems inner membrane component  40.82 
 
 
306 aa  212  7e-54  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000185658  n/a   
 
 
-
 
NC_013525  Tter_0507  binding-protein-dependent transport systems inner membrane component  41.06 
 
 
309 aa  212  7e-54  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_0514  binding-protein-dependent transport systems inner membrane component  40.74 
 
 
335 aa  211  1e-53  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.950902  normal 
 
 
-
 
NC_009523  RoseRS_3621  binding-protein-dependent transport systems inner membrane component  40.4 
 
 
335 aa  209  3e-53  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  40.28 
 
 
283 aa  206  4e-52  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1749  binding-protein-dependent transport systems inner membrane component  39.13 
 
 
307 aa  202  8e-51  Opitutus terrae PB90-1  Bacteria  normal  0.45981  normal 
 
 
-
 
NC_009664  Krad_2544  binding-protein-dependent transport systems inner membrane component  37.93 
 
 
313 aa  197  1.0000000000000001e-49  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  38.19 
 
 
317 aa  197  2.0000000000000003e-49  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_3792  binding-protein-dependent transport systems inner membrane component  39.64 
 
 
285 aa  196  6e-49  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.168129  normal 
 
 
-
 
NC_010320  Teth514_1100  binding-protein-dependent transport systems inner membrane component  37.93 
 
 
300 aa  194  2e-48  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0382  binding-protein-dependent transport systems inner membrane component  38.49 
 
 
296 aa  193  4e-48  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3002  binding-protein-dependent transport systems inner membrane component  37.84 
 
 
320 aa  190  2e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  39.48 
 
 
300 aa  189  5.999999999999999e-47  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0593  binding-protein-dependent transport systems inner membrane component  37.46 
 
 
308 aa  187  2e-46  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000379306  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  36.63 
 
 
306 aa  187  3e-46  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  35.86 
 
 
292 aa  185  1.0000000000000001e-45  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  36.33 
 
 
288 aa  182  5.0000000000000004e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  37.77 
 
 
293 aa  182  8.000000000000001e-45  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  38.13 
 
 
293 aa  181  2e-44  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_013525  Tter_0125  binding-protein-dependent transport systems inner membrane component  38.81 
 
 
302 aa  178  9e-44  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  38.81 
 
 
299 aa  178  1e-43  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0377  binding-protein-dependent transport systems inner membrane component  36.08 
 
 
294 aa  178  1e-43  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  37.18 
 
 
299 aa  177  2e-43  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  38.16 
 
 
313 aa  174  9.999999999999999e-43  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_014213  Mesil_3393  binding-protein-dependent transport systems inner membrane component  36.81 
 
 
291 aa  174  9.999999999999999e-43  Meiothermus silvanus DSM 9946  Bacteria  normal  0.199241  normal  0.935882 
 
 
-
 
NC_011831  Cagg_1687  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
333 aa  174  9.999999999999999e-43  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  35.42 
 
 
300 aa  174  1.9999999999999998e-42  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  37.92 
 
 
291 aa  174  1.9999999999999998e-42  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  35.69 
 
 
320 aa  173  2.9999999999999996e-42  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  37.12 
 
 
295 aa  173  3.9999999999999995e-42  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3980  binding-protein-dependent transport systems inner membrane component  37.55 
 
 
299 aa  172  7.999999999999999e-42  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00655631 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  36.5 
 
 
309 aa  171  1e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013172  Bfae_01240  permease component of ABC-type sugar transporter  37.67 
 
 
334 aa  171  1e-41  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  35.29 
 
 
301 aa  170  3e-41  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  34.6 
 
 
307 aa  170  3e-41  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  34.6 
 
 
307 aa  170  3e-41  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
320 aa  169  5e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_013172  Bfae_19290  carbohydrate ABC transporter membrane protein  38.46 
 
 
328 aa  169  5e-41  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0926617  n/a   
 
 
-
 
NC_011899  Hore_15550  binding-protein-dependent transport systems inner membrane component  38.96 
 
 
294 aa  169  5e-41  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
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