12 homologs were found in PanDaTox collection
for query gene Vapar_0004 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_0004  hypothetical protein  100 
 
 
328 aa  681    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1272  transcription factor jumonji, jmjC  29.5 
 
 
313 aa  127  2.0000000000000002e-28  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.306298  normal  0.0564395 
 
 
-
 
NC_007964  Nham_1520  transcription factor jumonji/aspartyl beta-hydroxylase  29.89 
 
 
313 aa  127  2.0000000000000002e-28  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1917  transcription factor jumonji, JmjC  32.56 
 
 
291 aa  122  9.999999999999999e-27  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.208156  normal 
 
 
-
 
NC_009719  Plav_2998  transcription factor jumonji/aspartyl beta-hydroxylase  28.93 
 
 
303 aa  115  6.9999999999999995e-25  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.279954 
 
 
-
 
NC_014148  Plim_1842  transcription factor jumonji/aspartyl beta- hydroxylase  29.51 
 
 
297 aa  115  6.9999999999999995e-25  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0253  transcription factor jumonji jmjC domain protein  28.52 
 
 
293 aa  108  9.000000000000001e-23  Methylobacterium populi BJ001  Bacteria  normal  normal  0.559364 
 
 
-
 
NC_011666  Msil_1700  transcription factor jumonji JmjC domain protein  28.77 
 
 
297 aa  108  2e-22  Methylocella silvestris BL2  Bacteria  n/a    normal  0.394813 
 
 
-
 
NC_007794  Saro_1065  transcription factor jumonji, jmjC  29.7 
 
 
293 aa  107  3e-22  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1682  transcription factor jumonji domain-containing protein  27.2 
 
 
328 aa  103  5e-21  Burkholderia phymatum STM815  Bacteria  normal  0.0968359  normal  0.585972 
 
 
-
 
NC_011666  Msil_1699  transcription factor jumonji JmjC domain protein  26.07 
 
 
297 aa  97.1  4e-19  Methylocella silvestris BL2  Bacteria  n/a    normal  0.298752 
 
 
-
 
NC_011666  Msil_3861  transcription factor jumonji JmjC domain protein  25.54 
 
 
352 aa  78.6  0.0000000000001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0608418 
 
 
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