5 homologs were found in PanDaTox collection
for query gene VSAL_I3217s on replicon NC_011312
Organism: Aliivibrio salmonicida LFI1238



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011312  VSAL_I3217s  CsrA-regulating small RNA CsrB2  100 
 
 
237 bp  470  1.0000000000000001e-131  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.000991946  n/a   
 
 
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NC_011312  VSAL_I3216s  CsrA-regulating small RNA CsrB3  99.33 
 
 
240 bp  287  7e-76  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.00109836  n/a   
 
 
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NC_011312  VSAL_I3142s  CsrA-regulating small RNA CsrB1  87.86 
 
 
237 bp  186  2.0000000000000003e-45  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.22514  n/a   
 
 
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NC_009783  VIBHAR_00349  CsrB/RsmB RNA family  83.9 
 
 
420 bp  125  6e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009783  VIBHAR_03245  CsrB/RsmB RNA family  85.05 
 
 
367 bp  56  0.000004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
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