More than 300 homologs were found in PanDaTox collection
for query gene VSAL_I1082 on replicon NC_011312
Organism: Aliivibrio salmonicida LFI1238



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011312  VSAL_I1082  response regulator  100 
 
 
367 aa  746    Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03091  hypothetical protein  47.58 
 
 
368 aa  323  4e-87  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002881  response regulator  45.71 
 
 
368 aa  318  1e-85  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0568  response regulator  42.38 
 
 
368 aa  280  3e-74  Vibrio cholerae O395  Bacteria  hitchhiker  0.00216047  n/a   
 
 
-
 
NC_013421  Pecwa_2280  response regulator of RpoS  31.43 
 
 
338 aa  140  4.999999999999999e-32  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0715238  n/a   
 
 
-
 
NC_010465  YPK_2078  response regulator of RpoS  31.33 
 
 
338 aa  139  8.999999999999999e-32  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2331  response regulator of RpoS  31.33 
 
 
338 aa  139  8.999999999999999e-32  Yersinia pestis Angola  Bacteria  hitchhiker  0.000591908  normal  0.501576 
 
 
-
 
NC_009708  YpsIP31758_1969  response regulator of RpoS  31.33 
 
 
338 aa  137  3.0000000000000003e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.313928  n/a   
 
 
-
 
NC_010501  PputW619_1682  response regulator receiver modulated serine phosphatase  31.74 
 
 
412 aa  137  3.0000000000000003e-31  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1959  response regulator of RpoS  30.23 
 
 
338 aa  137  4e-31  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1979  response regulator of RpoS  30.48 
 
 
338 aa  137  4e-31  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.46167  n/a   
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  30.9 
 
 
412 aa  135  8e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_010322  PputGB1_1706  response regulator receiver modulated serine phosphatase  31.05 
 
 
393 aa  135  9e-31  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000168842 
 
 
-
 
NC_009512  Pput_3577  response regulator receiver protein  29.61 
 
 
393 aa  135  9.999999999999999e-31  Pseudomonas putida F1  Bacteria  decreased coverage  0.00266085  normal 
 
 
-
 
NC_002947  PP_2165  response regulator  29.61 
 
 
393 aa  135  9.999999999999999e-31  Pseudomonas putida KT2440  Bacteria  normal  0.0249002  normal  0.813701 
 
 
-
 
NC_009832  Spro_2710  response regulator of RpoS  30.74 
 
 
337 aa  135  9.999999999999999e-31  Serratia proteamaculans 568  Bacteria  normal  0.317611  hitchhiker  0.000232648 
 
 
-
 
NC_012912  Dd1591_2201  response regulator of RpoS  30.54 
 
 
338 aa  134  1.9999999999999998e-30  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  30.07 
 
 
394 aa  131  2.0000000000000002e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  28.96 
 
 
394 aa  131  2.0000000000000002e-29  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_004578  PSPTO_2117  response regulator  34.36 
 
 
394 aa  130  4.0000000000000003e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0129975  n/a   
 
 
-
 
NC_011205  SeD_A1575  response regulator of RpoS  30.1 
 
 
337 aa  129  8.000000000000001e-29  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.307447  normal 
 
 
-
 
NC_011149  SeAg_B1392  response regulator of RpoS  29.77 
 
 
337 aa  128  1.0000000000000001e-28  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00188361  n/a   
 
 
-
 
NC_011080  SNSL254_A1880  response regulator of RpoS  29.77 
 
 
337 aa  128  1.0000000000000001e-28  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.239117  normal  0.804945 
 
 
-
 
NC_011083  SeHA_C1943  response regulator of RpoS  29.77 
 
 
337 aa  128  1.0000000000000001e-28  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.941531 
 
 
-
 
NC_011094  SeSA_A1886  response regulator of RpoS  29.77 
 
 
337 aa  128  1.0000000000000001e-28  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0489347  normal  0.205124 
 
 
-
 
NC_008463  PA14_27940  putative two-component response regulator  29.72 
 
 
394 aa  127  3e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1912  response regulator receiver:stage II sporulation E  32.6 
 
 
394 aa  127  4.0000000000000003e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.432168  hitchhiker  0.00180426 
 
 
-
 
NC_011663  Sbal223_1467  response regulator receiver protein  30.08 
 
 
367 aa  122  7e-27  Shewanella baltica OS223  Bacteria  normal  0.0140274  normal 
 
 
-
 
NC_009665  Shew185_2906  response regulator receiver protein  30.08 
 
 
367 aa  122  9.999999999999999e-27  Shewanella baltica OS185  Bacteria  normal  0.0132666  n/a   
 
 
-
 
NC_009997  Sbal195_3038  response regulator receiver protein  29.66 
 
 
367 aa  122  9.999999999999999e-27  Shewanella baltica OS195  Bacteria  normal  0.0232368  normal 
 
 
-
 
NC_009052  Sbal_2896  response regulator receiver protein  30.08 
 
 
367 aa  122  9.999999999999999e-27  Shewanella baltica OS155  Bacteria  hitchhiker  0.00201335  n/a   
 
 
-
 
NC_009436  Ent638_2308  response regulator of RpoS  30.1 
 
 
337 aa  119  7e-26  Enterobacter sp. 638  Bacteria  normal  0.863566  normal 
 
 
-
 
NC_010658  SbBS512_E1400  response regulator of RpoS  29.45 
 
 
337 aa  118  9.999999999999999e-26  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2546  response regulator receiver protein  28.69 
 
 
376 aa  119  9.999999999999999e-26  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01211  response regulator of RpoS  29.13 
 
 
337 aa  118  1.9999999999999998e-25  Escherichia coli BL21(DE3)  Bacteria  normal  0.480052  n/a   
 
 
-
 
NC_009800  EcHS_A1343  response regulator of RpoS  29.13 
 
 
337 aa  118  1.9999999999999998e-25  Escherichia coli HS  Bacteria  hitchhiker  0.00109338  n/a   
 
 
-
 
NC_012892  B21_01221  hypothetical protein  29.13 
 
 
337 aa  118  1.9999999999999998e-25  Escherichia coli BL21  Bacteria  normal  0.417729  n/a   
 
 
-
 
NC_012560  Avin_32720  Response regulator  28.12 
 
 
394 aa  117  1.9999999999999998e-25  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1720  response regulator of RpoS  29.13 
 
 
337 aa  118  1.9999999999999998e-25  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0232509  normal 
 
 
-
 
NC_009801  EcE24377A_1384  response regulator of RpoS  29.13 
 
 
337 aa  118  1.9999999999999998e-25  Escherichia coli E24377A  Bacteria  normal  0.421294  n/a   
 
 
-
 
NC_010468  EcolC_2392  response regulator of RpoS  29.13 
 
 
337 aa  118  1.9999999999999998e-25  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.00000237009 
 
 
-
 
NC_010498  EcSMS35_1906  response regulator of RpoS  29.13 
 
 
337 aa  118  1.9999999999999998e-25  Escherichia coli SMS-3-5  Bacteria  normal  0.174648  normal  0.215745 
 
 
-
 
NC_007954  Sden_1356  response regulator receiver  28.23 
 
 
386 aa  115  1.0000000000000001e-24  Shewanella denitrificans OS217  Bacteria  normal  0.235342  n/a   
 
 
-
 
NC_008321  Shewmr4_1312  response regulator receiver protein  28.51 
 
 
367 aa  115  1.0000000000000001e-24  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000399806  normal 
 
 
-
 
NC_008322  Shewmr7_1379  response regulator receiver protein  28.51 
 
 
367 aa  115  1.0000000000000001e-24  Shewanella sp. MR-7  Bacteria  hitchhiker  0.00673289  normal  0.16507 
 
 
-
 
NC_008345  Sfri_2806  response regulator receiver protein  27.5 
 
 
373 aa  115  1.0000000000000001e-24  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3196  response regulator  29.79 
 
 
367 aa  114  2.0000000000000002e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_1372  response regulator receiver protein  28.09 
 
 
367 aa  110  4.0000000000000004e-23  Shewanella sp. ANA-3  Bacteria  normal  0.0119088  hitchhiker  0.0000873565 
 
 
-
 
NC_009831  Ssed_3036  response regulator receiver protein  27.66 
 
 
367 aa  109  7.000000000000001e-23  Shewanella sediminis HAW-EB3  Bacteria  normal  0.697745  hitchhiker  0.00756104 
 
 
-
 
NC_008700  Sama_2267  response regulator receiver protein  31.03 
 
 
367 aa  107  2e-22  Shewanella amazonensis SB2B  Bacteria  normal  0.0287525  normal  0.0560142 
 
 
-
 
NC_009901  Spea_1391  response regulator receiver protein  29.44 
 
 
368 aa  107  3e-22  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1112  response regulator receiver domain-containing protein  31.4 
 
 
399 aa  105  9e-22  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1648  response regulator receiver protein  28.09 
 
 
367 aa  105  1e-21  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.0057956  normal 
 
 
-
 
NC_009092  Shew_1396  response regulator receiver protein  28.34 
 
 
367 aa  103  6e-21  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00425013  normal  0.314583 
 
 
-
 
NC_013173  Dbac_0913  response regulator receiver sensor hybrid histidine kinase  43.1 
 
 
544 aa  102  8e-21  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0064  histidine kinase  34.73 
 
 
598 aa  102  1e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013173  Dbac_2828  response regulator receiver sensor signal transduction histidine kinase  37.86 
 
 
410 aa  97.4  4e-19  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2325  response regulator receiver modulated metal dependent phosphohydrolase  33.97 
 
 
362 aa  96.7  6e-19  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.663275  n/a   
 
 
-
 
NC_011769  DvMF_1419  signal transduction histidine kinase  34.62 
 
 
551 aa  96.7  7e-19  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_1875  response regulator receiver modulated metal dependent phosphohydrolase  41.38 
 
 
361 aa  94.4  3e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0532  response regulator receiver /GGDEF/PAS/PAC domain-containing protein  34.68 
 
 
715 aa  94  4e-18  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1544  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  33.53 
 
 
739 aa  91.7  2e-17  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.498595 
 
 
-
 
NC_010814  Glov_2461  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.51 
 
 
581 aa  87  4e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3465  putative PAS/PAC sensor protein  36.29 
 
 
489 aa  86.3  9e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2539  two component, sigma54 specific, Fis family transcriptional regulator  39.5 
 
 
487 aa  85.5  0.000000000000001  Maricaulis maris MCS10  Bacteria  normal  0.846517  normal 
 
 
-
 
NC_008751  Dvul_2526  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  37.07 
 
 
715 aa  85.9  0.000000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  0.263284  normal  0.0502692 
 
 
-
 
NC_008639  Cpha266_1801  integral membrane sensor hybrid histidine kinase  36.62 
 
 
699 aa  84.7  0.000000000000002  Chlorobium phaeobacteroides DSM 266  Bacteria  unclonable  0.00000631548  n/a   
 
 
-
 
NC_011769  DvMF_3074  response regulator receiver modulated metal dependent phosphohydrolase  31.76 
 
 
363 aa  84.3  0.000000000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013946  Mrub_0302  two component transcriptional regulator, winged helix family  37.61 
 
 
221 aa  82.8  0.000000000000008  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3596  two component, sigma54 specific, transcriptional regulator, Fis family  36.07 
 
 
515 aa  82.8  0.000000000000009  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.363783 
 
 
-
 
NC_011369  Rleg2_3295  two component, sigma54 specific, transcriptional regulator, Fis family  36.36 
 
 
514 aa  82.8  0.000000000000009  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.836784  normal 
 
 
-
 
NC_010524  Lcho_2296  response regulator receiver sensor signal transduction histidine kinase  35.19 
 
 
394 aa  82  0.00000000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_3003  two component Fis family transcriptional regulator  35.33 
 
 
465 aa  82.4  0.00000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0697126  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  32.09 
 
 
461 aa  82  0.00000000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_011769  DvMF_1461  two component, sigma54 specific, transcriptional regulator, Fis family  34.65 
 
 
491 aa  81.6  0.00000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.750458 
 
 
-
 
NC_009636  Smed_2683  two component, sigma54 specific, Fis family transcriptional regulator  34.62 
 
 
549 aa  81.3  0.00000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.272019  normal  0.67062 
 
 
-
 
NC_009831  Ssed_2316  response regulator receiver protein  42.2 
 
 
226 aa  81.3  0.00000000000003  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.00000147543  hitchhiker  0.000888492 
 
 
-
 
NC_011769  DvMF_2549  response regulator receiver sensor signal transduction histidine kinase  36.19 
 
 
446 aa  81.3  0.00000000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009485  BBta_2152  putative response regulator, putative serine phosphatase  26.34 
 
 
434 aa  81.3  0.00000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008741  Dvul_3024  response regulator receiver modulated metal dependent phosphohydrolase  36.28 
 
 
363 aa  80.9  0.00000000000003  Desulfovibrio vulgaris DP4  Bacteria  normal  0.433593  n/a   
 
 
-
 
NC_010424  Daud_2177  response regulator receiver protein  35.29 
 
 
120 aa  80.5  0.00000000000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0710  two component, sigma54 specific, Fis family transcriptional regulator  35.77 
 
 
456 aa  80.5  0.00000000000004  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_3019  two component, sigma-54 specific, Fis family transcriptional regulator  33.07 
 
 
455 aa  80.1  0.00000000000005  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1657  two component, sigma54 specific, Fis family transcriptional regulator  35.45 
 
 
459 aa  80.1  0.00000000000005  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.000574549  normal  0.302016 
 
 
-
 
NC_009441  Fjoh_5047  two component, sigma54 specific, Fis family transcriptional regulator  35.04 
 
 
387 aa  80.1  0.00000000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0897789  n/a   
 
 
-
 
NC_004347  SO_2426  DNA-binding response regulator  39.45 
 
 
237 aa  80.1  0.00000000000006  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008255  CHU_1965  response regulatory protein, sigma 54 related  38.89 
 
 
384 aa  79.7  0.00000000000007  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0275961  normal  0.129103 
 
 
-
 
NC_011769  DvMF_0215  two component, sigma54 specific, transcriptional regulator, Fis family  33.59 
 
 
528 aa  79.7  0.00000000000007  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0571306 
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  34.75 
 
 
476 aa  79.7  0.00000000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_008751  Dvul_2709  response regulator receiver sensor signal transduction histidine kinase  38.89 
 
 
501 aa  79.7  0.00000000000007  Desulfovibrio vulgaris DP4  Bacteria  normal  0.710197  normal  0.745824 
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  28.19 
 
 
466 aa  79.3  0.00000000000009  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_010320  Teth514_2061  response regulator receiver modulated diguanylate cyclase  37.17 
 
 
318 aa  79.3  0.00000000000009  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0000000365539  n/a   
 
 
-
 
NC_011898  Ccel_2113  two component transcriptional regulator, AraC family  34.45 
 
 
538 aa  79.3  0.00000000000009  Clostridium cellulolyticum H10  Bacteria  normal  0.141697  n/a   
 
 
-
 
NC_011729  PCC7424_1723  multi-component transcriptional regulator, winged helix family  37.93 
 
 
597 aa  79  0.0000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000000000776738 
 
 
-
 
NC_008321  Shewmr4_1904  two component transcriptional regulator  37.61 
 
 
226 aa  78.6  0.0000000000001  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00970528  hitchhiker  0.0000356769 
 
 
-
 
NC_008322  Shewmr7_2074  two component transcriptional regulator  37.61 
 
 
226 aa  78.6  0.0000000000001  Shewanella sp. MR-7  Bacteria  decreased coverage  0.00164535  hitchhiker  0.00140528 
 
 
-
 
NC_013173  Dbac_2713  two component, sigma54 specific, transcriptional regulator, Fis family  34.96 
 
 
454 aa  78.6  0.0000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2392  two component, sigma54 specific, transcriptional regulator, Fis family  34.09 
 
 
458 aa  79  0.0000000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0321511  normal 
 
 
-
 
NC_008751  Dvul_2459  multi-sensor signal transduction histidine kinase  34.48 
 
 
489 aa  79.3  0.0000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.854352 
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  33.33 
 
 
454 aa  78.6  0.0000000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
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