More than 300 homologs were found in PanDaTox collection
for query gene VIBHAR_04971 on replicon NC_009784
Organism: Vibrio harveyi ATCC BAA-1116



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013457  VEA_001184  putative two-component response regulator  94.13 
 
 
443 aa  863    Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  100 
 
 
444 aa  917    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_0079  sigma-54 dependent trancsriptional regulator  57.68 
 
 
433 aa  426  1e-118  Shewanella sediminis HAW-EB3  Bacteria  normal  0.819278  normal 
 
 
-
 
NC_009052  Sbal_3981  sigma-54 dependent trancsriptional regulator  58.45 
 
 
433 aa  425  1e-118  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_3661  sigma-54 factor, interaction region  57.33 
 
 
434 aa  423  1e-117  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3478  sigma-54 dependent trancsriptional regulator  58.49 
 
 
436 aa  410  1e-113  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0085  sigma-54 dependent trancsriptional regulator  55.41 
 
 
435 aa  407  1.0000000000000001e-112  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4419  two component, sigma54 specific, Fis family transcriptional regulator  52.83 
 
 
469 aa  384  1e-105  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.475055 
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  45.74 
 
 
481 aa  383  1e-105  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  47.66 
 
 
451 aa  377  1e-103  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  47.2 
 
 
470 aa  376  1e-103  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  44.67 
 
 
497 aa  372  1e-102  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  47.03 
 
 
458 aa  375  1e-102  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  46.62 
 
 
463 aa  371  1e-101  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  46.99 
 
 
451 aa  371  1e-101  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  47.66 
 
 
451 aa  371  1e-101  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  45.88 
 
 
448 aa  360  4e-98  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  45.92 
 
 
470 aa  359  5e-98  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  45.4 
 
 
473 aa  356  5e-97  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  43.71 
 
 
471 aa  355  1e-96  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  44.82 
 
 
445 aa  355  1e-96  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  45.98 
 
 
447 aa  353  2e-96  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  40.54 
 
 
478 aa  353  5e-96  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  44.78 
 
 
471 aa  351  1e-95  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_0629  sigma-54 dependent transcriptional regulator  52.4 
 
 
342 aa  344  2e-93  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  43.32 
 
 
459 aa  343  2e-93  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  46.15 
 
 
449 aa  342  5.999999999999999e-93  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  44.22 
 
 
447 aa  340  2e-92  Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_010159  YpAngola_A0236  sigma-54 transcriptional regulatory protein  51.8 
 
 
342 aa  340  2.9999999999999998e-92  Yersinia pestis Angola  Bacteria  normal  0.143809  normal  0.138456 
 
 
-
 
NC_010465  YPK_0709  sigma-54 dependent trancsriptional regulator  51.8 
 
 
342 aa  340  2.9999999999999998e-92  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.821581  n/a   
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  44.3 
 
 
449 aa  340  2.9999999999999998e-92  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  44 
 
 
447 aa  339  5.9999999999999996e-92  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  44.32 
 
 
437 aa  338  8e-92  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  43.78 
 
 
447 aa  338  9.999999999999999e-92  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  41.56 
 
 
469 aa  338  9.999999999999999e-92  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  43.36 
 
 
446 aa  338  9.999999999999999e-92  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  41.12 
 
 
479 aa  338  9.999999999999999e-92  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  43.78 
 
 
447 aa  338  9.999999999999999e-92  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  41.18 
 
 
469 aa  337  3.9999999999999995e-91  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  49.86 
 
 
455 aa  336  3.9999999999999995e-91  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  42.02 
 
 
473 aa  335  5.999999999999999e-91  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  44.62 
 
 
457 aa  335  1e-90  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  43.62 
 
 
446 aa  334  2e-90  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp1726  hypothetical protein  43.86 
 
 
437 aa  334  2e-90  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  45.94 
 
 
476 aa  333  4e-90  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  47.64 
 
 
469 aa  333  4e-90  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  43.02 
 
 
446 aa  332  7.000000000000001e-90  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  43.57 
 
 
446 aa  331  1e-89  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  43.43 
 
 
446 aa  331  1e-89  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  42.89 
 
 
446 aa  332  1e-89  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  42.89 
 
 
446 aa  331  1e-89  Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  42.73 
 
 
450 aa  329  5.0000000000000004e-89  Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  42.7 
 
 
447 aa  329  5.0000000000000004e-89  Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  49.44 
 
 
446 aa  329  7e-89  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  41.56 
 
 
461 aa  324  2e-87  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  41.34 
 
 
461 aa  321  9.999999999999999e-87  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  41.34 
 
 
461 aa  321  9.999999999999999e-87  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  41.34 
 
 
461 aa  321  9.999999999999999e-87  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  41.34 
 
 
461 aa  321  9.999999999999999e-87  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  41.34 
 
 
461 aa  321  9.999999999999999e-87  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  42.13 
 
 
452 aa  320  5e-86  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  43.05 
 
 
448 aa  319  6e-86  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  41.06 
 
 
452 aa  319  7e-86  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  40 
 
 
454 aa  316  6e-85  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  41.54 
 
 
463 aa  311  1e-83  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  45.08 
 
 
453 aa  311  2e-83  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_010498  EcSMS35_0248  lateral flagellar RpoN-interacting regulatory protein LafK  48.48 
 
 
328 aa  310  2.9999999999999997e-83  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2041  sigma-54 dependent DNA-binding response regulator  41.14 
 
 
455 aa  310  4e-83  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  41.54 
 
 
448 aa  308  1.0000000000000001e-82  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  39.96 
 
 
452 aa  308  1.0000000000000001e-82  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_010468  EcolC_3384  putative sigma54 specific transcriptional regulator  48.17 
 
 
328 aa  305  1.0000000000000001e-81  Escherichia coli ATCC 8739  Bacteria  normal  0.399889  normal 
 
 
-
 
NC_002939  GSU0372  sigma-54 dependent DNA-binding response regulator  45.56 
 
 
461 aa  303  3.0000000000000004e-81  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0300  two component, sigma54 specific, Fis family transcriptional regulator  46.81 
 
 
457 aa  303  3.0000000000000004e-81  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  38.31 
 
 
457 aa  303  4.0000000000000003e-81  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  38.31 
 
 
457 aa  303  5.000000000000001e-81  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  39.61 
 
 
455 aa  302  7.000000000000001e-81  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  40.22 
 
 
470 aa  302  7.000000000000001e-81  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_009675  Anae109_2442  two component, sigma54 specific, Fis family transcriptional regulator  40.13 
 
 
480 aa  301  1e-80  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2062  two component, sigma54 specific, transcriptional regulator, Fis family  41.98 
 
 
449 aa  301  1e-80  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000000496565 
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  43.52 
 
 
453 aa  301  2e-80  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3407  two component, sigma54 specific, transcriptional regulator, Fis family  44.32 
 
 
458 aa  300  3e-80  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  44.56 
 
 
459 aa  299  7e-80  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1326  two component, sigma54 specific, Fis family transcriptional regulator  39.87 
 
 
485 aa  299  8e-80  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2018  two component, sigma-54 specific, Fis family transcriptional regulator  41.02 
 
 
447 aa  298  1e-79  Geobacter uraniireducens Rf4  Bacteria  normal  0.110893  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  40.13 
 
 
457 aa  298  2e-79  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2629  two component, sigma54 specific, transcriptional regulator, Fis family  39.87 
 
 
483 aa  298  2e-79  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.14604  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  40.09 
 
 
460 aa  297  3e-79  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3302  two component, sigma54 specific, transcriptional regulator, Fis family  39.05 
 
 
472 aa  297  3e-79  Haliangium ochraceum DSM 14365  Bacteria  normal  0.334689  normal  0.605218 
 
 
-
 
NC_008554  Sfum_0570  NifA subfamily transcriptional regulator  47.68 
 
 
508 aa  297  3e-79  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.106051  normal  0.50757 
 
 
-
 
NC_009484  Acry_1472  two component, sigma54 specific, Fis family transcriptional regulator  43.9 
 
 
451 aa  296  4e-79  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  40.18 
 
 
452 aa  296  5e-79  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_011145  AnaeK_2533  two component, sigma54 specific, transcriptional regulator, Fis family  39.64 
 
 
483 aa  296  5e-79  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2713  two component, sigma54 specific, transcriptional regulator, Fis family  39.56 
 
 
454 aa  295  9e-79  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0961  two component, sigma54 specific, Fis family transcriptional regulator  39.47 
 
 
454 aa  295  1e-78  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1179  two component, sigma54 specific, Fis family transcriptional regulator  38.83 
 
 
457 aa  294  2e-78  Pelobacter propionicus DSM 2379  Bacteria  normal  0.655382  n/a   
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  39.56 
 
 
473 aa  293  3e-78  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_009483  Gura_3375  two component, sigma-54 specific, Fis family transcriptional regulator  37.93 
 
 
461 aa  294  3e-78  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3599  two component Fis family transcriptional regulator  40.17 
 
 
459 aa  293  3e-78  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  38.67 
 
 
466 aa  293  4e-78  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_009483  Gura_3389  two component, sigma-54 specific, Fis family transcriptional regulator  41.81 
 
 
462 aa  292  7e-78  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
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