More than 300 homologs were found in PanDaTox collection
for query gene VEA_000282 on replicon NC_013457
Organism: Vibrio sp. Ex25



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013457  VEA_000282  putative two-component response regulator  100 
 
 
202 aa  413  1e-114  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05894  two component transcriptional regulator  80.1 
 
 
202 aa  330  6e-90  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009708  YpsIP31758_2160  LuxR family DNA-binding response regulator  36.73 
 
 
210 aa  126  3e-28  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2269  two component LuxR family transcriptional regulator  36.73 
 
 
210 aa  126  3e-28  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2113  LuxR family DNA-binding response regulator  36.22 
 
 
210 aa  123  2e-27  Yersinia pestis Angola  Bacteria  normal  normal  0.616678 
 
 
-
 
NC_009436  Ent638_0993  transcriptional regulator FimZ  36.22 
 
 
210 aa  115  3.9999999999999997e-25  Enterobacter sp. 638  Bacteria  normal  hitchhiker  0.000287084 
 
 
-
 
NC_009656  PSPA7_1160  putative two-component response regulator  34.17 
 
 
209 aa  113  2.0000000000000002e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0122525  n/a   
 
 
-
 
NC_008463  PA14_12780  putative two-component response regulator  34.17 
 
 
209 aa  111  6e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000000000436161  normal 
 
 
-
 
NC_011083  SeHA_C0659  transcriptional regulator FimZ  35.2 
 
 
210 aa  110  1.0000000000000001e-23  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.611229  normal 
 
 
-
 
NC_011080  SNSL254_A0602  transcriptional regulator FimZ  35.2 
 
 
210 aa  110  1.0000000000000001e-23  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.379869  normal  0.0923244 
 
 
-
 
NC_011094  SeSA_A0594  transcriptional regulator FimZ  35.2 
 
 
210 aa  110  1.0000000000000001e-23  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.627077  hitchhiker  0.00790766 
 
 
-
 
NC_011205  SeD_A0598  transcriptional regulator FimZ  35.2 
 
 
210 aa  110  2.0000000000000002e-23  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.110504 
 
 
-
 
NC_009656  PSPA7_2093  putative two-component response regulator  33.83 
 
 
207 aa  109  2.0000000000000002e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B0595  transcriptional regulator FimZ  35.2 
 
 
210 aa  110  2.0000000000000002e-23  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.447967  n/a   
 
 
-
 
NC_008463  PA14_24710  putative two-component response regulator  33.33 
 
 
207 aa  108  5e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5940  LuxR family response regulator  29.5 
 
 
220 aa  105  4e-22  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.000000781929  normal 
 
 
-
 
NC_007974  Rmet_5714  two component LuxR family transcriptional regulator  29.85 
 
 
210 aa  102  5e-21  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1620  two component LuxR family transcriptional regulator  31.31 
 
 
206 aa  100  1e-20  Pseudomonas putida W619  Bacteria  normal  normal  0.0222153 
 
 
-
 
NC_007005  Psyr_2114  LuxR response regulator receiver  32.67 
 
 
212 aa  100  2e-20  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.22828 
 
 
-
 
NC_007492  Pfl01_4515  two component LuxR family transcriptional regulator  34.16 
 
 
208 aa  100  2e-20  Pseudomonas fluorescens Pf0-1  Bacteria  normal  hitchhiker  0.00786387 
 
 
-
 
NC_010501  PputW619_2781  two component LuxR family transcriptional regulator  33.33 
 
 
204 aa  99.4  3e-20  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4151  DNA-binding response regulator, LuxR family  34.83 
 
 
208 aa  99.8  3e-20  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.35782  n/a   
 
 
-
 
NC_007005  Psyr_3890  LuxR response regulator receiver  34.83 
 
 
208 aa  99.8  3e-20  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.330128 
 
 
-
 
NC_013501  Rmar_1122  two component transcriptional regulator, LuxR family  32.67 
 
 
234 aa  98.6  5e-20  Rhodothermus marinus DSM 4252  Bacteria  normal  0.752968  n/a   
 
 
-
 
NC_009379  Pnuc_1808  two component LuxR family transcriptional regulator  30.26 
 
 
207 aa  99  5e-20  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  hitchhiker  0.000516369  n/a   
 
 
-
 
NC_010676  Bphyt_6866  two component transcriptional regulator, LuxR family  32.81 
 
 
202 aa  97.8  9e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  0.140006  normal  0.169631 
 
 
-
 
NC_007348  Reut_B4470  two component LuxR family transcriptional regulator  29.53 
 
 
232 aa  97.1  1e-19  Ralstonia eutropha JMP134  Bacteria  normal  0.370568  n/a   
 
 
-
 
NC_009512  Pput_2350  two component LuxR family transcriptional regulator  32.83 
 
 
204 aa  95.9  3e-19  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1119  two component LuxR family transcriptional regulator  32.84 
 
 
208 aa  95.9  3e-19  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2528  two component LuxR family transcriptional regulator  33.16 
 
 
204 aa  96.3  3e-19  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0522002 
 
 
-
 
NC_002947  PP_3412  LuxR family DNA-binding response regulator  32.83 
 
 
204 aa  95.5  5e-19  Pseudomonas putida KT2440  Bacteria  normal  normal  0.338288 
 
 
-
 
NC_010623  Bphy_4334  two component LuxR family transcriptional regulator  33.33 
 
 
209 aa  95.5  5e-19  Burkholderia phymatum STM815  Bacteria  normal  0.255025  normal 
 
 
-
 
NC_007492  Pfl01_3974  two component LuxR family transcriptional regulator  31.34 
 
 
208 aa  95.1  6e-19  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4322  two component LuxR family transcriptional regulator  32.34 
 
 
207 aa  94.4  1e-18  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1090  LuxR family DNA-binding response regulator  32.16 
 
 
207 aa  93.2  2e-18  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2101  LuxR family DNA-binding response regulator  29.44 
 
 
207 aa  93.6  2e-18  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.00862279  normal  0.220235 
 
 
-
 
NC_009512  Pput_1131  two component LuxR family transcriptional regulator  32.16 
 
 
236 aa  93.2  2e-18  Pseudomonas putida F1  Bacteria  normal  0.796271  normal  0.799889 
 
 
-
 
NC_010623  Bphy_4331  two component LuxR family transcriptional regulator  28.14 
 
 
212 aa  93.2  2e-18  Burkholderia phymatum STM815  Bacteria  normal  0.748519  normal 
 
 
-
 
NC_009512  Pput_3638  two component LuxR family transcriptional regulator  29.44 
 
 
205 aa  93.6  2e-18  Pseudomonas putida F1  Bacteria  normal  normal  0.489861 
 
 
-
 
NC_010322  PputGB1_1643  two component LuxR family transcriptional regulator  29.65 
 
 
205 aa  92.8  3e-18  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.003137  normal 
 
 
-
 
CP001509  ECD_00485  predicted DNA-binding transcriptional regulator  30.96 
 
 
210 aa  92  5e-18  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00490  hypothetical protein  30.96 
 
 
210 aa  92  5e-18  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3078  two component transcriptional regulator, LuxR family  30.96 
 
 
210 aa  92  5e-18  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0577  transcriptional regulator FimZ  30.96 
 
 
210 aa  92  5e-18  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0636  transcriptional regulator FimZ  30.96 
 
 
210 aa  92  5e-18  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.931873  normal  0.250092 
 
 
-
 
NC_010468  EcolC_3087  transcriptional regulator FimZ  30.96 
 
 
210 aa  92  5e-18  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A0610  transcriptional regulator FimZ  30.96 
 
 
210 aa  92  5e-18  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0580  transcriptional regulator FimZ  31.12 
 
 
210 aa  92  6e-18  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2902  two component LuxR family transcriptional regulator  33.33 
 
 
212 aa  91.3  9e-18  Methylibium petroleiphilum PM1  Bacteria  normal  0.255362  normal 
 
 
-
 
NC_012856  Rpic12D_3065  two component transcriptional regulator, LuxR family  31.32 
 
 
194 aa  90.9  1e-17  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3411  two component transcriptional regulator, LuxR family  31.32 
 
 
194 aa  90.9  1e-17  Ralstonia pickettii 12J  Bacteria  normal  normal  0.608689 
 
 
-
 
NC_010658  SbBS512_E0462  transcriptional regulator FimZ  31.09 
 
 
199 aa  89.4  3e-17  Shigella boydii CDC 3083-94  Bacteria  normal  0.739138  n/a   
 
 
-
 
NC_009656  PSPA7_0036  putative two-component response regulator  32.66 
 
 
207 aa  89.4  3e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  0.035019  n/a   
 
 
-
 
NC_008463  PA14_00430  putative two-component response regulator  32.66 
 
 
207 aa  89.4  3e-17  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.247974 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  27.23 
 
 
212 aa  89  4e-17  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2928  two component LuxR family transcriptional regulator  26.73 
 
 
213 aa  89  4e-17  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0459  two component LuxR family transcriptional regulator  31.16 
 
 
207 aa  88.2  8e-17  Cupriavidus metallidurans CH34  Bacteria  normal  0.957088  normal 
 
 
-
 
NC_010676  Bphyt_6883  two component transcriptional regulator, LuxR family  27.36 
 
 
213 aa  88.2  8e-17  Burkholderia phytofirmans PsJN  Bacteria  normal  0.239531  normal  0.170628 
 
 
-
 
NC_007348  Reut_B5536  LuxR response regulator receiver  27.64 
 
 
209 aa  87.4  1e-16  Ralstonia eutropha JMP134  Bacteria  normal  0.882777  n/a   
 
 
-
 
NC_009438  Sputcn32_0304  two component LuxR family transcriptional regulator  29.95 
 
 
207 aa  87  2e-16  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02279  DNA-binding response regulator in two-component regulatory system with EvgS  29.59 
 
 
204 aa  86.3  3e-16  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1288  two component transcriptional regulator, LuxR family  29.59 
 
 
204 aa  86.3  3e-16  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02240  hypothetical protein  29.59 
 
 
204 aa  86.3  3e-16  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1300  DNA-binding transcriptional activator EvgA  29.59 
 
 
204 aa  86.3  3e-16  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_2655  DNA-binding transcriptional activator EvgA  29.59 
 
 
204 aa  86.3  3e-16  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2506  DNA-binding transcriptional activator EvgA  29.59 
 
 
204 aa  86.3  3e-16  Escherichia coli HS  Bacteria  hitchhiker  0.00265649  n/a   
 
 
-
 
NC_010498  EcSMS35_2519  DNA-binding transcriptional activator EvgA  29.59 
 
 
204 aa  86.3  3e-16  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_3600  DNA-binding transcriptional activator EvgA  29.59 
 
 
204 aa  86.3  3e-16  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0441797 
 
 
-
 
NC_009439  Pmen_1951  two component LuxR family transcriptional regulator  26 
 
 
216 aa  86.3  3e-16  Pseudomonas mendocina ymp  Bacteria  normal  0.142543  normal  0.70584 
 
 
-
 
NC_011663  Sbal223_0174  two component transcriptional regulator, LuxR family  29.29 
 
 
208 aa  85.9  4e-16  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E2738  DNA-binding transcriptional activator EvgA  29.59 
 
 
204 aa  85.1  7e-16  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2713  two component LuxR family transcriptional regulator  29.06 
 
 
216 aa  85.1  7e-16  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_1123  two component transcriptional regulator, LuxR family  29.06 
 
 
242 aa  84  0.000000000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_06590  DNA-binding response regulator, LuxR family protein  30.35 
 
 
210 aa  83.6  0.000000000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1286  two component LuxR family transcriptional regulator  32.16 
 
 
213 aa  83.2  0.000000000000002  Serratia proteamaculans 568  Bacteria  normal  normal  0.172682 
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  26.8 
 
 
206 aa  83.6  0.000000000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_009338  Mflv_3579  two component LuxR family transcriptional regulator  26.44 
 
 
217 aa  83.2  0.000000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.393396  normal  0.0540104 
 
 
-
 
NC_003910  CPS_1260  putative nitrate/nitrite DNA-binding response regulator  27.86 
 
 
206 aa  83.2  0.000000000000003  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_4012  transcriptional regulator NarL  25.25 
 
 
214 aa  83.2  0.000000000000003  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1863  two component LuxR family transcriptional regulator  29.65 
 
 
209 aa  82.8  0.000000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.207146  normal 
 
 
-
 
NC_007517  Gmet_2158  two component LuxR family transcriptional regulator  28.06 
 
 
210 aa  82.8  0.000000000000003  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.0301144 
 
 
-
 
NC_010571  Oter_1716  two component LuxR family transcriptional regulator  31.19 
 
 
223 aa  82.8  0.000000000000003  Opitutus terrae PB90-1  Bacteria  normal  normal  0.144163 
 
 
-
 
NC_007952  Bxe_B2906  two component LuxR family transcriptional regulator  30.41 
 
 
203 aa  83.2  0.000000000000003  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_1981  two component transcriptional regulator, LuxR family  28.96 
 
 
222 aa  82.4  0.000000000000004  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3131  two component LuxR family transcriptional regulator  27.64 
 
 
212 aa  82.4  0.000000000000004  Pseudomonas putida GB-1  Bacteria  normal  normal  0.33361 
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  28.77 
 
 
215 aa  82  0.000000000000005  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  27.87 
 
 
235 aa  82  0.000000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_008578  Acel_1390  two component LuxR family transcriptional regulator  30.46 
 
 
225 aa  82  0.000000000000005  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3091  two component LuxR family transcriptional regulator  27.64 
 
 
212 aa  82  0.000000000000005  Pseudomonas putida F1  Bacteria  normal  0.425372  normal 
 
 
-
 
NC_002947  PP_2672  LuxR family DNA-binding response regulator  27.64 
 
 
212 aa  81.6  0.000000000000007  Pseudomonas putida KT2440  Bacteria  normal  0.24109  normal 
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  27.23 
 
 
220 aa  81.6  0.000000000000008  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_010627  Bphy_7764  two component LuxR family transcriptional regulator  29.69 
 
 
210 aa  81.3  0.000000000000008  Burkholderia phymatum STM815  Bacteria  normal  0.527093  normal 
 
 
-
 
NC_009727  CBUD_0726  response regulator  28.86 
 
 
211 aa  81.6  0.000000000000008  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_3163  two component LuxR family transcriptional regulator  26.9 
 
 
203 aa  81.3  0.000000000000009  Pelobacter propionicus DSM 2379  Bacteria  normal  0.932633  n/a   
 
 
-
 
NC_007650  BTH_II1570  LuxR family DNA-binding response regulator  30 
 
 
215 aa  80.5  0.00000000000001  Burkholderia thailandensis E264  Bacteria  normal  0.17909  n/a   
 
 
-
 
NC_007947  Mfla_0945  two component LuxR family transcriptional regulator  29.53 
 
 
210 aa  80.9  0.00000000000001  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1089  two component LuxR family transcriptional regulator  29.53 
 
 
210 aa  80.9  0.00000000000001  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1987  two component LuxR family transcriptional regulator  30.65 
 
 
215 aa  81.3  0.00000000000001  Methylobacillus flagellatus KT  Bacteria  normal  0.0949899  normal 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  29.56 
 
 
225 aa  80.5  0.00000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  26.13 
 
 
229 aa  80.9  0.00000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
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