More than 300 homologs were found in PanDaTox collection
for query gene VC0395_A0568 on replicon NC_009457
Organism: Vibrio cholerae O395



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009457  VC0395_A0568  response regulator  100 
 
 
368 aa  763    Vibrio cholerae O395  Bacteria  hitchhiker  0.00216047  n/a   
 
 
-
 
NC_009783  VIBHAR_03091  hypothetical protein  60.66 
 
 
368 aa  473  1e-132  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002881  response regulator  60.11 
 
 
368 aa  464  1e-129  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1082  response regulator  42.38 
 
 
367 aa  280  3e-74  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2331  response regulator of RpoS  34.71 
 
 
338 aa  152  8.999999999999999e-36  Yersinia pestis Angola  Bacteria  hitchhiker  0.000591908  normal  0.501576 
 
 
-
 
NC_010465  YPK_2078  response regulator of RpoS  34.39 
 
 
338 aa  150  3e-35  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1969  response regulator of RpoS  34.39 
 
 
338 aa  150  5e-35  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.313928  n/a   
 
 
-
 
NC_009832  Spro_2710  response regulator of RpoS  33.44 
 
 
337 aa  149  6e-35  Serratia proteamaculans 568  Bacteria  normal  0.317611  hitchhiker  0.000232648 
 
 
-
 
NC_012917  PC1_1979  response regulator of RpoS  31.21 
 
 
338 aa  144  2e-33  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.46167  n/a   
 
 
-
 
NC_013421  Pecwa_2280  response regulator of RpoS  31.85 
 
 
338 aa  143  5e-33  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0715238  n/a   
 
 
-
 
NC_009436  Ent638_2308  response regulator of RpoS  32.8 
 
 
337 aa  142  8e-33  Enterobacter sp. 638  Bacteria  normal  0.863566  normal 
 
 
-
 
NC_012912  Dd1591_2201  response regulator of RpoS  33.75 
 
 
338 aa  141  9.999999999999999e-33  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1575  response regulator of RpoS  30.56 
 
 
337 aa  141  1.9999999999999998e-32  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.307447  normal 
 
 
-
 
NC_011080  SNSL254_A1880  response regulator of RpoS  30.56 
 
 
337 aa  140  1.9999999999999998e-32  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.239117  normal  0.804945 
 
 
-
 
NC_011083  SeHA_C1943  response regulator of RpoS  30.56 
 
 
337 aa  140  1.9999999999999998e-32  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.941531 
 
 
-
 
NC_012880  Dd703_1959  response regulator of RpoS  31.35 
 
 
338 aa  141  1.9999999999999998e-32  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1392  response regulator of RpoS  30.56 
 
 
337 aa  140  1.9999999999999998e-32  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00188361  n/a   
 
 
-
 
NC_011094  SeSA_A1886  response regulator of RpoS  30.56 
 
 
337 aa  140  1.9999999999999998e-32  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0489347  normal  0.205124 
 
 
-
 
CP001509  ECD_01211  response regulator of RpoS  31.45 
 
 
337 aa  138  2e-31  Escherichia coli BL21(DE3)  Bacteria  normal  0.480052  n/a   
 
 
-
 
NC_009801  EcE24377A_1384  response regulator of RpoS  31.45 
 
 
337 aa  138  2e-31  Escherichia coli E24377A  Bacteria  normal  0.421294  n/a   
 
 
-
 
NC_010468  EcolC_2392  response regulator of RpoS  31.45 
 
 
337 aa  138  2e-31  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.00000237009 
 
 
-
 
NC_011353  ECH74115_1720  response regulator of RpoS  31.45 
 
 
337 aa  138  2e-31  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0232509  normal 
 
 
-
 
NC_012892  B21_01221  hypothetical protein  31.45 
 
 
337 aa  138  2e-31  Escherichia coli BL21  Bacteria  normal  0.417729  n/a   
 
 
-
 
NC_009800  EcHS_A1343  response regulator of RpoS  31.45 
 
 
337 aa  138  2e-31  Escherichia coli HS  Bacteria  hitchhiker  0.00109338  n/a   
 
 
-
 
NC_010498  EcSMS35_1906  response regulator of RpoS  31.45 
 
 
337 aa  138  2e-31  Escherichia coli SMS-3-5  Bacteria  normal  0.174648  normal  0.215745 
 
 
-
 
NC_010658  SbBS512_E1400  response regulator of RpoS  31.45 
 
 
337 aa  137  4e-31  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1706  response regulator receiver modulated serine phosphatase  29.46 
 
 
393 aa  134  1.9999999999999998e-30  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000168842 
 
 
-
 
NC_009512  Pput_3577  response regulator receiver protein  30.38 
 
 
393 aa  131  2.0000000000000002e-29  Pseudomonas putida F1  Bacteria  decreased coverage  0.00266085  normal 
 
 
-
 
NC_002947  PP_2165  response regulator  30.38 
 
 
393 aa  130  3e-29  Pseudomonas putida KT2440  Bacteria  normal  0.0249002  normal  0.813701 
 
 
-
 
NC_010501  PputW619_1682  response regulator receiver modulated serine phosphatase  30.5 
 
 
412 aa  129  8.000000000000001e-29  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3036  response regulator receiver protein  31.56 
 
 
367 aa  127  4.0000000000000003e-28  Shewanella sediminis HAW-EB3  Bacteria  normal  0.697745  hitchhiker  0.00756104 
 
 
-
 
NC_010506  Swoo_1648  response regulator receiver protein  31.56 
 
 
367 aa  125  1e-27  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.0057956  normal 
 
 
-
 
NC_007005  Psyr_1912  response regulator receiver:stage II sporulation E  28.34 
 
 
394 aa  124  4e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.432168  hitchhiker  0.00180426 
 
 
-
 
NC_012560  Avin_32720  Response regulator  28.81 
 
 
394 aa  120  3e-26  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3038  response regulator receiver protein  30.54 
 
 
367 aa  120  3.9999999999999996e-26  Shewanella baltica OS195  Bacteria  normal  0.0232368  normal 
 
 
-
 
NC_004578  PSPTO_2117  response regulator  28.03 
 
 
394 aa  119  6e-26  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0129975  n/a   
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  28.77 
 
 
412 aa  119  7e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  29.62 
 
 
394 aa  118  9.999999999999999e-26  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_009052  Sbal_2896  response regulator receiver protein  29.58 
 
 
367 aa  119  9.999999999999999e-26  Shewanella baltica OS155  Bacteria  hitchhiker  0.00201335  n/a   
 
 
-
 
NC_011663  Sbal223_1467  response regulator receiver protein  29.58 
 
 
367 aa  119  9.999999999999999e-26  Shewanella baltica OS223  Bacteria  normal  0.0140274  normal 
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  27.46 
 
 
394 aa  118  9.999999999999999e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2906  response regulator receiver protein  29.58 
 
 
367 aa  118  9.999999999999999e-26  Shewanella baltica OS185  Bacteria  normal  0.0132666  n/a   
 
 
-
 
NC_009438  Sputcn32_2546  response regulator receiver protein  29.17 
 
 
376 aa  118  1.9999999999999998e-25  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_27940  putative two-component response regulator  27.14 
 
 
394 aa  118  1.9999999999999998e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3196  response regulator  30.93 
 
 
367 aa  115  1.0000000000000001e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_1312  response regulator receiver protein  30.08 
 
 
367 aa  115  1.0000000000000001e-24  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000399806  normal 
 
 
-
 
NC_008322  Shewmr7_1379  response regulator receiver protein  30.08 
 
 
367 aa  115  1.0000000000000001e-24  Shewanella sp. MR-7  Bacteria  hitchhiker  0.00673289  normal  0.16507 
 
 
-
 
NC_008577  Shewana3_1372  response regulator receiver protein  30.51 
 
 
367 aa  112  1.0000000000000001e-23  Shewanella sp. ANA-3  Bacteria  normal  0.0119088  hitchhiker  0.0000873565 
 
 
-
 
NC_009901  Spea_1391  response regulator receiver protein  29.1 
 
 
368 aa  109  7.000000000000001e-23  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2806  response regulator receiver protein  26.23 
 
 
373 aa  109  1e-22  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1396  response regulator receiver protein  29.8 
 
 
367 aa  108  2e-22  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00425013  normal  0.314583 
 
 
-
 
NC_007912  Sde_1112  response regulator receiver domain-containing protein  25.43 
 
 
399 aa  107  3e-22  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1356  response regulator receiver  28.34 
 
 
386 aa  105  1e-21  Shewanella denitrificans OS217  Bacteria  normal  0.235342  n/a   
 
 
-
 
NC_008700  Sama_2267  response regulator receiver protein  28.81 
 
 
367 aa  102  2e-20  Shewanella amazonensis SB2B  Bacteria  normal  0.0287525  normal  0.0560142 
 
 
-
 
NC_011769  DvMF_1544  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  41.74 
 
 
739 aa  98.6  2e-19  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.498595 
 
 
-
 
NC_013173  Dbac_0913  response regulator receiver sensor hybrid histidine kinase  40 
 
 
544 aa  96.7  5e-19  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_3074  response regulator receiver modulated metal dependent phosphohydrolase  33.16 
 
 
363 aa  95.5  1e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010424  Daud_1738  response regulator receiver protein  41.18 
 
 
122 aa  92  1e-17  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0532  response regulator receiver /GGDEF/PAS/PAC domain-containing protein  33.53 
 
 
715 aa  92.4  1e-17  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2461  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36 
 
 
581 aa  91.3  3e-17  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2174  response regulator receiver modulated metal dependent phosphohydrolase  38.33 
 
 
474 aa  90.9  4e-17  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1419  signal transduction histidine kinase  40.87 
 
 
551 aa  88.6  2e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013173  Dbac_2828  response regulator receiver sensor signal transduction histidine kinase  35.77 
 
 
410 aa  88.6  2e-16  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0715  response regulator receiver protein  39.5 
 
 
121 aa  88.2  2e-16  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0064  histidine kinase  37.27 
 
 
598 aa  88.6  2e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013173  Dbac_2325  response regulator receiver modulated metal dependent phosphohydrolase  39.32 
 
 
362 aa  88.2  2e-16  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.663275  n/a   
 
 
-
 
NC_008751  Dvul_2526  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  39.68 
 
 
715 aa  88.6  2e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  0.263284  normal  0.0502692 
 
 
-
 
NC_013385  Adeg_2019  response regulator receiver protein  37.4 
 
 
123 aa  87.8  3e-16  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1377  two component, sigma54 specific, transcriptional regulator, Fis family  40.95 
 
 
462 aa  87.8  3e-16  Geobacter lovleyi SZ  Bacteria  normal  0.244526  n/a   
 
 
-
 
NC_009253  Dred_2382  response regulator receiver protein  38.33 
 
 
122 aa  85.5  0.000000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05331  transcriptional regulatory protein CpxR  30.11 
 
 
280 aa  84.3  0.000000000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009718  Fnod_0692  response regulator receiver protein  37.07 
 
 
119 aa  84  0.000000000000004  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000557  DNA-binding response regulator  39.02 
 
 
230 aa  83.6  0.000000000000005  Vibrio sp. Ex25  Bacteria  normal  0.702579  n/a   
 
 
-
 
NC_009523  RoseRS_0195  two component transcriptional regulator  33.73 
 
 
243 aa  83.6  0.000000000000005  Roseiflexus sp. RS-1  Bacteria  normal  hitchhiker  0.00716616 
 
 
-
 
NC_009616  Tmel_0931  response regulator receiver protein  37.29 
 
 
120 aa  83.6  0.000000000000005  Thermosipho melanesiensis BI429  Bacteria  normal  0.252152  n/a   
 
 
-
 
NC_010524  Lcho_2296  response regulator receiver sensor signal transduction histidine kinase  32.28 
 
 
394 aa  83.2  0.000000000000006  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009675  Anae109_0965  two component, sigma54 specific, Fis family transcriptional regulator  35.38 
 
 
466 aa  83.2  0.000000000000007  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.605384  normal 
 
 
-
 
NC_009767  Rcas_4344  two component transcriptional regulator  33.13 
 
 
239 aa  83.2  0.000000000000007  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.325933  normal  0.345767 
 
 
-
 
NC_007519  Dde_3465  putative PAS/PAC sensor protein  34.78 
 
 
489 aa  82.8  0.000000000000008  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_1870  response regulator receiver modulated serine phosphatase  30.04 
 
 
379 aa  82.4  0.00000000000001  Cyanothece sp. PCC 8802  Bacteria  normal  0.177859  normal 
 
 
-
 
NC_011726  PCC8801_1844  response regulator receiver modulated serine phosphatase  30.04 
 
 
379 aa  82.4  0.00000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_2152  putative response regulator, putative serine phosphatase  28.98 
 
 
434 aa  82  0.00000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2159  response regulator receiver protein  36.67 
 
 
120 aa  82.4  0.00000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00200925  n/a   
 
 
-
 
NC_007517  Gmet_0555  two component, sigma54 specific, Fis family transcriptional regulator  34.15 
 
 
457 aa  82.4  0.00000000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_1522  histidine kinase  32.79 
 
 
544 aa  82  0.00000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2087  two component LuxR family transcriptional regulator  35.83 
 
 
217 aa  82.4  0.00000000000001  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.332036 
 
 
-
 
NC_008751  Dvul_1875  response regulator receiver modulated metal dependent phosphohydrolase  35.83 
 
 
361 aa  82.8  0.00000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_5047  two component, sigma54 specific, Fis family transcriptional regulator  36.27 
 
 
387 aa  81.6  0.00000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0897789  n/a   
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  32.65 
 
 
225 aa  81.6  0.00000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_009483  Gura_2018  two component, sigma-54 specific, Fis family transcriptional regulator  33.86 
 
 
447 aa  81.6  0.00000000000002  Geobacter uraniireducens Rf4  Bacteria  normal  0.110893  n/a   
 
 
-
 
NC_007963  Csal_0717  two component, sigma54 specific, Fis family transcriptional regulator  36.36 
 
 
466 aa  82  0.00000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0230  response regulator receiver protein  36.44 
 
 
120 aa  82  0.00000000000002  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01723  two-component system response regulator  35.9 
 
 
446 aa  81.3  0.00000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0228  response regulator receiver protein  36.44 
 
 
120 aa  82  0.00000000000002  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  33.82 
 
 
225 aa  81.3  0.00000000000002  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_008825  Mpe_A3190  twitching motility, CheY-like protein  33.87 
 
 
141 aa  80.9  0.00000000000003  Methylibium petroleiphilum PM1  Bacteria  normal  0.510228  normal  0.242476 
 
 
-
 
NC_013173  Dbac_2645  response regulator receiver modulated metal dependent phosphohydrolase  33.61 
 
 
364 aa  80.9  0.00000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1136  response regulator receiver domain-containing protein  34.21 
 
 
132 aa  80.9  0.00000000000003  Polaromonas sp. JS666  Bacteria  normal  normal  0.638067 
 
 
-
 
NC_008312  Tery_4323  two component LuxR family transcriptional regulator  37.5 
 
 
215 aa  81.3  0.00000000000003  Trichodesmium erythraeum IMS101  Bacteria  normal  0.115662  normal  0.727411 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  31.78 
 
 
448 aa  80.9  0.00000000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>