More than 300 homologs were found in PanDaTox collection
for query gene Tpau_3534 on replicon NC_014158
Organism: Tsukamurella paurometabola DSM 20162



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014158  Tpau_3534  two component transcriptional regulator, LuxR family  100 
 
 
206 aa  402  1e-111  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1588  two component transcriptional regulator, LuxR family  67.96 
 
 
201 aa  263  1e-69  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.117504  normal 
 
 
-
 
NC_013521  Sked_03860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  66.83 
 
 
204 aa  256  1e-67  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0649288  normal  0.281143 
 
 
-
 
NC_009921  Franean1_0528  two component LuxR family transcriptional regulator  65.05 
 
 
201 aa  246  2e-64  Frankia sp. EAN1pec  Bacteria  normal  0.653057  normal 
 
 
-
 
NC_013757  Gobs_4836  two component transcriptional regulator, LuxR family  66.99 
 
 
201 aa  232  2.0000000000000002e-60  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.16538  n/a   
 
 
-
 
NC_014210  Ndas_1808  two component transcriptional regulator, LuxR family  63.11 
 
 
201 aa  225  4e-58  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.207018 
 
 
-
 
NC_014165  Tbis_0907  LuxR family two component transcriptional regulator  60.19 
 
 
197 aa  217  8.999999999999998e-56  Thermobispora bispora DSM 43833  Bacteria  normal  0.365102  normal 
 
 
-
 
NC_007333  Tfu_0288  LuxR response regulator receiver  56.04 
 
 
201 aa  213  1.9999999999999998e-54  Thermobifida fusca YX  Bacteria  normal  0.0935286  n/a   
 
 
-
 
NC_013159  Svir_11510  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  54.55 
 
 
203 aa  206  2e-52  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.575058  normal 
 
 
-
 
NC_013595  Sros_1680  response regulator receiver protein  57.28 
 
 
197 aa  204  1e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.516841 
 
 
-
 
NC_014211  Ndas_5200  two component transcriptional regulator, LuxR family  53.88 
 
 
223 aa  202  3e-51  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0156716  normal  0.415255 
 
 
-
 
NC_013510  Tcur_1624  two component transcriptional regulator, LuxR family  53.88 
 
 
201 aa  192  4e-48  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0305603  n/a   
 
 
-
 
NC_013947  Snas_2068  two component transcriptional regulator, LuxR family  48.78 
 
 
212 aa  184  1.0000000000000001e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.385073  normal  0.894995 
 
 
-
 
NC_012669  Bcav_0286  two component transcriptional regulator, LuxR family  52.91 
 
 
203 aa  182  2.0000000000000003e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.784033  normal  0.130384 
 
 
-
 
NC_013757  Gobs_1641  two component transcriptional regulator, LuxR family  50.97 
 
 
201 aa  182  3e-45  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_2957  two component transcriptional regulator, LuxR family  52.91 
 
 
201 aa  182  3e-45  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00144362  n/a   
 
 
-
 
NC_013739  Cwoe_5628  two component transcriptional regulator, LuxR family  51.44 
 
 
200 aa  180  1e-44  Conexibacter woesei DSM 14684  Bacteria  normal  0.946433  normal  0.876589 
 
 
-
 
NC_013131  Caci_0763  two component transcriptional regulator, LuxR family  48.54 
 
 
208 aa  180  1e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.313515 
 
 
-
 
NC_013235  Namu_3006  two component transcriptional regulator, LuxR family  50.49 
 
 
204 aa  179  2.9999999999999997e-44  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000248543  hitchhiker  0.000146029 
 
 
-
 
NC_012669  Bcav_0588  two component transcriptional regulator, LuxR family  50.24 
 
 
204 aa  177  7e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013947  Snas_0503  two component transcriptional regulator, LuxR family  49.76 
 
 
202 aa  177  1e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.900292 
 
 
-
 
NC_013174  Jden_0118  two component transcriptional regulator, LuxR family  45.85 
 
 
205 aa  176  2e-43  Jonesia denitrificans DSM 20603  Bacteria  normal  0.137239  normal  0.184056 
 
 
-
 
NC_013131  Caci_1897  two component transcriptional regulator, LuxR family  46.6 
 
 
200 aa  172  1.9999999999999998e-42  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.299419  normal 
 
 
-
 
NC_013739  Cwoe_4753  two component transcriptional regulator, LuxR family  49.76 
 
 
201 aa  173  1.9999999999999998e-42  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.226774 
 
 
-
 
NC_013595  Sros_4055  response regulator receiver protein  49.76 
 
 
201 aa  172  1.9999999999999998e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0367887 
 
 
-
 
NC_013595  Sros_4334  response regulator receiver protein  53.85 
 
 
200 aa  172  2.9999999999999996e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  0.574495  normal  0.636855 
 
 
-
 
NC_013595  Sros_0091  response regulator receiver protein  47.83 
 
 
204 aa  171  5.999999999999999e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  0.520551  normal 
 
 
-
 
NC_012803  Mlut_16250  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.51 
 
 
224 aa  171  1e-41  Micrococcus luteus NCTC 2665  Bacteria  normal  0.216822  n/a   
 
 
-
 
NC_014165  Tbis_1720  LuxR family two component transcriptional regulator  50 
 
 
201 aa  170  1e-41  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_06600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.54 
 
 
200 aa  169  4e-41  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.680692  normal 
 
 
-
 
NC_013510  Tcur_2770  two component transcriptional regulator, LuxR family  45.63 
 
 
201 aa  167  9e-41  Thermomonospora curvata DSM 43183  Bacteria  normal  0.282039  n/a   
 
 
-
 
NC_013595  Sros_8146  response regulator receiver protein  50.24 
 
 
202 aa  166  2e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.524184 
 
 
-
 
NC_009674  Bcer98_3871  two component LuxR family transcriptional regulator  40.29 
 
 
200 aa  166  2e-40  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00685623  n/a   
 
 
-
 
NC_011365  Gdia_1908  two component transcriptional regulator, LuxR family  47.57 
 
 
201 aa  166  2.9999999999999998e-40  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.264232 
 
 
-
 
NC_008578  Acel_0195  two component LuxR family transcriptional regulator  50.73 
 
 
205 aa  165  4e-40  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.116105 
 
 
-
 
NC_011725  BCB4264_A5475  DNA-binding response regulator  40.78 
 
 
200 aa  164  8e-40  Bacillus cereus B4264  Bacteria  normal  0.132453  n/a   
 
 
-
 
NC_013093  Amir_1937  two component transcriptional regulator, LuxR family  47.57 
 
 
201 aa  163  1.0000000000000001e-39  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5477  DNA-binding response regulator  40.29 
 
 
200 aa  162  3e-39  Bacillus cereus G9842  Bacteria  hitchhiker  0.00156963  hitchhiker  0.00000000000102018 
 
 
-
 
NC_010184  BcerKBAB4_5150  two component LuxR family transcriptional regulator  39.32 
 
 
200 aa  162  3e-39  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6441  response regulator receiver protein  46.12 
 
 
227 aa  162  4.0000000000000004e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  0.176234  normal  0.0893652 
 
 
-
 
NC_011658  BCAH187_A5531  DNA-binding response regulator  39.81 
 
 
200 aa  162  4.0000000000000004e-39  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5200  DNA-binding response regulator  39.81 
 
 
200 aa  161  5.0000000000000005e-39  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5050  DNA-binding response regulator  39.81 
 
 
200 aa  161  5.0000000000000005e-39  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5597  DNA-binding response regulator  39.81 
 
 
200 aa  161  5.0000000000000005e-39  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0258  two component transcriptional regulator, LuxR family  45.15 
 
 
200 aa  161  5.0000000000000005e-39  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5482  DNA-binding response regulator  39.32 
 
 
200 aa  161  7e-39  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5034  DNA-binding response regulator  39.81 
 
 
200 aa  160  1e-38  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.617082  n/a   
 
 
-
 
NC_011773  BCAH820_5444  DNA-binding response regulator  39.81 
 
 
200 aa  160  1e-38  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_008025  Dgeo_0183  two component LuxR family transcriptional regulator  50 
 
 
200 aa  160  1e-38  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.541303  normal  0.654013 
 
 
-
 
NC_013205  Aaci_0655  two component transcriptional regulator, LuxR family  44.17 
 
 
200 aa  160  1e-38  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4598  response regulator receiver protein  49.03 
 
 
201 aa  159  2e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.053163 
 
 
-
 
NC_014210  Ndas_1079  two component transcriptional regulator, LuxR family  45.15 
 
 
200 aa  159  2e-38  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.782019  normal  0.0499592 
 
 
-
 
NC_013169  Ksed_00990  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.89 
 
 
201 aa  160  2e-38  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.666199  normal 
 
 
-
 
NC_013947  Snas_4572  two component transcriptional regulator, LuxR family  49.03 
 
 
200 aa  158  4e-38  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.318618  normal  0.115695 
 
 
-
 
NC_013159  Svir_02200  two component transcriptional regulator, LuxR family  47.32 
 
 
208 aa  156  2e-37  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3820  two component LuxR family transcriptional regulator  40.78 
 
 
205 aa  153  2e-36  Saccharophagus degradans 2-40  Bacteria  normal  0.113202  normal 
 
 
-
 
NC_013131  Caci_0691  two component transcriptional regulator, LuxR family  47.69 
 
 
190 aa  152  2.9999999999999998e-36  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_06340  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.2 
 
 
211 aa  150  8.999999999999999e-36  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3654  two component transcriptional regulator, LuxR family  44.5 
 
 
201 aa  148  6e-35  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0345388 
 
 
-
 
NC_013946  Mrub_1264  two component LuxR family transcriptional regulator  45.63 
 
 
200 aa  145  3e-34  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.86401 
 
 
-
 
NC_013235  Namu_2610  two component transcriptional regulator, LuxR family  56.55 
 
 
144 aa  144  1e-33  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00000438854  normal  0.0112001 
 
 
-
 
NC_008347  Mmar10_2543  two component LuxR family transcriptional regulator  43.69 
 
 
202 aa  144  1e-33  Maricaulis maris MCS10  Bacteria  normal  0.446643  normal 
 
 
-
 
NC_009092  Shew_3506  two component LuxR family transcriptional regulator  40 
 
 
198 aa  141  9e-33  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03365  DNA-binding response regulator, LuxR family protein  35.96 
 
 
205 aa  140  9e-33  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4591  two component LuxR family transcriptional regulator  37.44 
 
 
198 aa  132  3e-30  Shewanella woodyi ATCC 51908  Bacteria  normal  unclonable  0.00000001788 
 
 
-
 
NC_009487  SaurJH9_1383  two component LuxR family transcriptional regulator  32.52 
 
 
200 aa  129  4.0000000000000003e-29  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000320378  n/a   
 
 
-
 
NC_009632  SaurJH1_1410  response regulator receiver  32.52 
 
 
200 aa  129  4.0000000000000003e-29  Staphylococcus aureus subsp. aureus JH1  Bacteria  hitchhiker  0.000440417  n/a   
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  33.02 
 
 
213 aa  127  1.0000000000000001e-28  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_013595  Sros_2445  response regulator receiver protein  37.9 
 
 
218 aa  127  1.0000000000000001e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0115114  normal  0.02149 
 
 
-
 
NC_004347  SO_0351  LuxR family DNA-binding response regulator  40 
 
 
198 aa  126  2.0000000000000002e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  37.61 
 
 
220 aa  126  2.0000000000000002e-28  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6814  response regulator receiver protein  52.71 
 
 
159 aa  125  4.0000000000000003e-28  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0355  two component transcriptional regulator, LuxR family  39.02 
 
 
198 aa  125  5e-28  Shewanella baltica OS223  Bacteria  normal  0.881439  hitchhiker  0.0000000668977 
 
 
-
 
NC_008321  Shewmr4_3621  two component LuxR family transcriptional regulator  39.51 
 
 
198 aa  125  5e-28  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0322  two component LuxR family transcriptional regulator  39.51 
 
 
198 aa  125  5e-28  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3818  two component LuxR family transcriptional regulator  39.51 
 
 
198 aa  125  5e-28  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0347  two component LuxR family transcriptional regulator  39.02 
 
 
198 aa  125  5e-28  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0345  two component LuxR family transcriptional regulator  39.02 
 
 
198 aa  125  5e-28  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_3475  response regulator receiver  38.1 
 
 
207 aa  125  6e-28  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0352  two component LuxR family transcriptional regulator  39.02 
 
 
198 aa  124  8.000000000000001e-28  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  37.38 
 
 
215 aa  123  2e-27  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  37.39 
 
 
226 aa  122  5e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  35.19 
 
 
216 aa  121  7e-27  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_008345  Sfri_0357  two component transcriptional regulator, LuxR family protein  41.89 
 
 
202 aa  121  8e-27  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP0889  LuxR family DNA-binding response regulator  30.58 
 
 
200 aa  120  1.9999999999999998e-26  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.0000916195  n/a   
 
 
-
 
NC_013510  Tcur_4551  two component transcriptional regulator, LuxR family  36.36 
 
 
220 aa  119  3e-26  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  35.51 
 
 
217 aa  119  3.9999999999999996e-26  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  36.82 
 
 
222 aa  119  3.9999999999999996e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_013595  Sros_7316  response regulator receiver protein  38.35 
 
 
201 aa  118  7e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03553  DNA-binding response regulator in two-component regulatory system wtih UhpB  37.5 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0034  two component transcriptional regulator, LuxR family  37.5 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4250  DNA-binding transcriptional activator UhpA  37.5 
 
 
196 aa  118  7.999999999999999e-26  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0030  DNA-binding transcriptional activator UhpA  37.5 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03495  hypothetical protein  37.5 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3882  DNA-binding transcriptional activator UhpA  37.5 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5099  DNA-binding transcriptional activator UhpA  37.5 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0828785 
 
 
-
 
NC_009801  EcE24377A_4178  DNA-binding transcriptional activator UhpA  37.5 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4034  DNA-binding transcriptional activator UhpA  37.5 
 
 
196 aa  118  7.999999999999999e-26  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.383338 
 
 
-
 
NC_011083  SeHA_C4121  DNA-binding transcriptional activator UhpA  37.02 
 
 
196 aa  117  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.97066  normal 
 
 
-
 
NC_014210  Ndas_0782  two component transcriptional regulator, LuxR family  35.87 
 
 
220 aa  117  9.999999999999999e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
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