More than 300 homologs were found in PanDaTox collection
for query gene Tgr7_1360 on replicon NC_011901
Organism: Thioalkalivibrio sp. HL-EbGR7



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  100 
 
 
223 aa  454  1e-127  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  52.61 
 
 
216 aa  218  7.999999999999999e-56  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_009485  BBta_3690  cyclic nucleotide-binding protein  53.7 
 
 
224 aa  217  8.999999999999998e-56  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  49.77 
 
 
220 aa  211  5.999999999999999e-54  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  49.77 
 
 
231 aa  211  7.999999999999999e-54  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2521  transcriptional regulator  50.79 
 
 
225 aa  209  4e-53  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  42.79 
 
 
221 aa  186  3e-46  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  44.44 
 
 
230 aa  177  1e-43  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  44.5 
 
 
222 aa  169  4e-41  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  43.81 
 
 
228 aa  169  4e-41  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  43.13 
 
 
240 aa  167  1e-40  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  43.68 
 
 
218 aa  161  7e-39  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  43.68 
 
 
218 aa  161  7e-39  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  44.83 
 
 
224 aa  160  1e-38  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  38.73 
 
 
220 aa  156  2e-37  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  43.48 
 
 
223 aa  154  1e-36  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  42.99 
 
 
224 aa  153  2e-36  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  42.64 
 
 
213 aa  149  3e-35  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  41.81 
 
 
229 aa  140  9.999999999999999e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  40.19 
 
 
222 aa  139  4.999999999999999e-32  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  39.91 
 
 
229 aa  138  6e-32  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  43.46 
 
 
247 aa  135  4e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  39.11 
 
 
224 aa  132  3e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  35.79 
 
 
227 aa  120  9.999999999999999e-27  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  29.28 
 
 
208 aa  114  1.0000000000000001e-24  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  31.35 
 
 
224 aa  114  2.0000000000000002e-24  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  33.15 
 
 
212 aa  111  8.000000000000001e-24  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  28.33 
 
 
210 aa  106  3e-22  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  30.05 
 
 
201 aa  104  1e-21  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  29.03 
 
 
235 aa  102  3e-21  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  32.22 
 
 
283 aa  97.8  1e-19  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  31.15 
 
 
211 aa  97.8  1e-19  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  29.05 
 
 
208 aa  96.3  4e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_009952  Dshi_2528  putative transcriptional regulator  30.69 
 
 
251 aa  86.7  3e-16  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.244849 
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  30.41 
 
 
201 aa  82.4  0.000000000000005  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  32.2 
 
 
218 aa  81.3  0.00000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  25.12 
 
 
212 aa  77.8  0.0000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_008025  Dgeo_0780  Crp/FNR family transcriptional regulator  32.21 
 
 
231 aa  77.8  0.0000000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.390237  normal 
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  28.57 
 
 
218 aa  76.6  0.0000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  29.95 
 
 
224 aa  74.3  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  25.68 
 
 
225 aa  72.8  0.000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_008463  PA14_03580  putative transcriptional regulator  28.31 
 
 
228 aa  71.6  0.000000000008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.000980911  hitchhiker  0.0000000000977836 
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  28.28 
 
 
222 aa  70.5  0.00000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  27.41 
 
 
240 aa  70.9  0.00000000002  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  28.08 
 
 
228 aa  70.5  0.00000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  25.73 
 
 
226 aa  70.5  0.00000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  24.76 
 
 
233 aa  69.7  0.00000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  24.76 
 
 
233 aa  69.7  0.00000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  29.19 
 
 
223 aa  68.9  0.00000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  26.04 
 
 
229 aa  68.2  0.00000000009  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  24.88 
 
 
226 aa  67.8  0.0000000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  27.64 
 
 
222 aa  67  0.0000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  25 
 
 
241 aa  66.6  0.0000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  25.77 
 
 
229 aa  66.6  0.0000000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_0269  Crp/FNR family transcriptional regulator  25.86 
 
 
238 aa  66.6  0.0000000003  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  25 
 
 
230 aa  66.6  0.0000000003  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_013946  Mrub_0426  Crp/Fnr family transcriptional regulator  29.08 
 
 
202 aa  66.6  0.0000000003  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.86211 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  24.89 
 
 
225 aa  66.6  0.0000000003  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_2075  Crp/FNR family transcriptional regulator  27.89 
 
 
210 aa  66.2  0.0000000004  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  24.31 
 
 
233 aa  65.1  0.0000000007  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4483  transcriptional regulator, Crp/Fnr family  27.69 
 
 
243 aa  65.1  0.0000000008  Ralstonia pickettii 12J  Bacteria  normal  normal  0.183908 
 
 
-
 
NC_012857  Rpic12D_4617  transcriptional regulator, Crp/Fnr family  27.69 
 
 
243 aa  65.1  0.0000000008  Ralstonia pickettii 12D  Bacteria  normal  0.652735  normal 
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  26.77 
 
 
231 aa  64.3  0.000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  26.15 
 
 
236 aa  64.7  0.000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008820  P9303_24561  CRP family global nitrogen regulatory protein  27.44 
 
 
222 aa  63.5  0.000000002  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  24.31 
 
 
226 aa  63.5  0.000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  26.92 
 
 
221 aa  63.5  0.000000002  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  26.5 
 
 
231 aa  63.2  0.000000003  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_3062  transcriptional regulator, Crp/Fnr family  24.87 
 
 
232 aa  63.2  0.000000003  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  26.5 
 
 
231 aa  63.2  0.000000003  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3408  transcriptional regulator, Crp/Fnr family  25 
 
 
243 aa  63.5  0.000000003  Ralstonia pickettii 12J  Bacteria  normal  normal  0.258046 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  23.74 
 
 
225 aa  63.2  0.000000003  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  28.57 
 
 
227 aa  63.5  0.000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  25.98 
 
 
231 aa  62.8  0.000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_013411  GYMC61_1555  transcriptional regulator, Crp/Fnr family  26.46 
 
 
230 aa  62.4  0.000000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_003296  RS01902  putative transcription regulator protein  28.43 
 
 
239 aa  62.4  0.000000006  Ralstonia solanacearum GMI1000  Bacteria  normal  0.980965  normal  0.145891 
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  25 
 
 
224 aa  62  0.000000007  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_010002  Daci_3287  Crp/FNR family transcriptional regulator  24.49 
 
 
239 aa  62  0.000000007  Delftia acidovorans SPH-1  Bacteria  normal  0.370075  normal  0.683237 
 
 
-
 
NC_010086  Bmul_4311  cyclic nucleotide-binding protein  25.23 
 
 
285 aa  62  0.000000008  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0853188  normal  0.342841 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  24.54 
 
 
229 aa  61.6  0.000000009  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  26.34 
 
 
228 aa  61.6  0.000000009  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  24.31 
 
 
228 aa  61.2  0.00000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  24.31 
 
 
225 aa  61.2  0.00000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  24.76 
 
 
224 aa  61.2  0.00000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  24.27 
 
 
234 aa  60.8  0.00000001  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_4308  cyclic nucleotide-binding protein  23.59 
 
 
239 aa  60.8  0.00000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0411784  normal 
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  26.29 
 
 
239 aa  60.8  0.00000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  23.79 
 
 
225 aa  59.7  0.00000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009091  P9301_02691  CRP family global nitrogen regulatory protein  26.98 
 
 
244 aa  60.1  0.00000003  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_2580  Crp/FNR family transcriptional regulator  27.66 
 
 
231 aa  59.7  0.00000003  Polaromonas sp. JS666  Bacteria  normal  normal  0.117752 
 
 
-
 
NC_008025  Dgeo_1015  CRP/FNR family transcriptional regulator  27.78 
 
 
204 aa  59.7  0.00000003  Deinococcus geothermalis DSM 11300  Bacteria  unclonable  0.00000000202163  unclonable  0.0000000139192 
 
 
-
 
NC_008816  A9601_02681  CRP family global nitrogen regulatory protein  26.98 
 
 
244 aa  59.7  0.00000003  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.548193  n/a   
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  24.71 
 
 
226 aa  59.7  0.00000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  24.06 
 
 
236 aa  59.3  0.00000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0372  transcriptional regulator, Crp/Fnr family  22.92 
 
 
225 aa  59.7  0.00000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007604  Synpcc7942_0127  Crp/FNR family transcriptional regulator  24.49 
 
 
222 aa  59.3  0.00000004  Synechococcus elongatus PCC 7942  Bacteria  normal  0.867755  normal  0.325855 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  29.17 
 
 
217 aa  59.7  0.00000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  24.31 
 
 
220 aa  59.3  0.00000004  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_013525  Tter_0550  transcriptional regulator, Crp/Fnr family  29.45 
 
 
224 aa  59.7  0.00000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007577  PMT9312_0248  Crp/FNR family transcriptional regulator  26.46 
 
 
244 aa  58.9  0.00000006  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
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