72 homologs were found in PanDaTox collection
for query gene Tgr7_1086 on replicon NC_011901
Organism: Thioalkalivibrio sp. HL-EbGR7



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011901  Tgr7_1086  positive regulator of sigma E, RseC/MucC  100 
 
 
157 aa  307  2.9999999999999997e-83  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.284991  n/a   
 
 
-
 
NC_008463  PA14_54400  positive regulator for alginate biosynthesis MucC  49.66 
 
 
151 aa  115  1.9999999999999998e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.675062  normal 
 
 
-
 
NC_009656  PSPA7_4754  positive regulator for alginate biosynthesis MucC  48.99 
 
 
151 aa  113  1.0000000000000001e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1101  positive regulator of sigma E, RseC/MucC  42.66 
 
 
155 aa  102  2e-21  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.138854 
 
 
-
 
NC_008340  Mlg_1342  positive regulator of sigma E, RseC/MucC  41.5 
 
 
147 aa  98.6  3e-20  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0666262  normal  0.770202 
 
 
-
 
NC_009439  Pmen_1470  positive regulator of sigma E, RseC/MucC  46.71 
 
 
151 aa  97.4  7e-20  Pseudomonas mendocina ymp  Bacteria  normal  0.51254  normal 
 
 
-
 
NC_008740  Maqu_2260  positive regulator of sigma E, RseC/MucC  37.5 
 
 
149 aa  93.2  1e-18  Marinobacter aquaeolei VT8  Bacteria  normal  0.32117  n/a   
 
 
-
 
NC_013889  TK90_1953  positive regulator of sigma E, RseC/MucC  40 
 
 
151 aa  89.7  1e-17  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.13883  normal 
 
 
-
 
NC_002977  MCA1468  sigma factor regulator MucC  46.46 
 
 
146 aa  88.6  3e-17  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3152  positive regulator of sigma E, RseC/MucC  35.8 
 
 
167 aa  82.4  0.000000000000002  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000000405546  n/a   
 
 
-
 
NC_007520  Tcr_0730  positive regulator of sigma(E), RseC/MucC  34.71 
 
 
167 aa  81.3  0.000000000000005  Thiomicrospira crunogena XCL-2  Bacteria  decreased coverage  0.0000000000000950135  n/a   
 
 
-
 
NC_007484  Noc_2463  positive regulator of sigma(E), RseC/MucC  43.53 
 
 
146 aa  80.1  0.00000000000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.939617  n/a   
 
 
-
 
NC_012560  Avin_13720  Positive regulator for alginate biosynthesis MucC  37.24 
 
 
156 aa  79.3  0.00000000000002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2248  positive regulator for alginate biosynthesis MucC  31.85 
 
 
156 aa  78.2  0.00000000000004  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00000124681  normal  0.0231164 
 
 
-
 
NC_008309  HS_1608  positive sigma-E factor regulatory protein  27.27 
 
 
167 aa  77.4  0.00000000000007  Haemophilus somnus 129PT  Bacteria  normal  0.0389331  n/a   
 
 
-
 
NC_009943  Dole_2512  positive regulator of sigma E, RseC/MucC  29.14 
 
 
152 aa  77.4  0.00000000000007  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1772  positive regulator of sigma(E), RseC/MucC  31.82 
 
 
159 aa  74.3  0.0000000000006  Magnetococcus sp. MC-1  Bacteria  unclonable  0.0000000000338989  hitchhiker  0.000593819 
 
 
-
 
NC_009832  Spro_3673  SoxR reducing system protein RseC  31.69 
 
 
157 aa  73.2  0.000000000001  Serratia proteamaculans 568  Bacteria  normal  0.290268  normal  0.795656 
 
 
-
 
NC_008345  Sfri_2932  positive regulator of sigma E, RseC/MucC  29.93 
 
 
168 aa  69.7  0.00000000002  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00401591  n/a   
 
 
-
 
NC_012917  PC1_3074  SoxR reducing system protein RseC  30.28 
 
 
150 aa  69.3  0.00000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  hitchhiker  0.0025103  n/a   
 
 
-
 
NC_010465  YPK_1185  SoxR reducing system protein RseC  30.28 
 
 
151 aa  69.7  0.00000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.101352  n/a   
 
 
-
 
NC_009708  YpsIP31758_1132  SoxR reducing system protein RseC  30.28 
 
 
151 aa  69.7  0.00000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0219505  n/a   
 
 
-
 
NC_010159  YpAngola_A3607  SoxR reducing system protein RseC  30.28 
 
 
151 aa  69.7  0.00000000002  Yersinia pestis Angola  Bacteria  hitchhiker  0.00898672  normal 
 
 
-
 
NC_010718  Nther_1269  positive regulator of sigma E, RseC/MucC  28.86 
 
 
151 aa  67.4  0.00000000007  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_0704  positive regulator of sigma E, RseC/MucC  34.97 
 
 
183 aa  67.4  0.00000000007  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1275  positive regulator of sigma E, RseC/MucC  31.76 
 
 
157 aa  66.6  0.0000000001  Shewanella baltica OS195  Bacteria  normal  0.0820222  normal 
 
 
-
 
NC_009665  Shew185_1242  positive regulator of sigma E, RseC/MucC  31.76 
 
 
157 aa  66.6  0.0000000001  Shewanella baltica OS185  Bacteria  hitchhiker  0.000737615  n/a   
 
 
-
 
NC_011663  Sbal223_3115  positive regulator of sigma E, RseC/MucC  31.76 
 
 
157 aa  66.6  0.0000000001  Shewanella baltica OS223  Bacteria  normal  0.0121324  normal  0.0261972 
 
 
-
 
NC_009438  Sputcn32_1156  positive regulator of sigma E, RseC/MucC  32.67 
 
 
157 aa  67  0.0000000001  Shewanella putrefaciens CN-32  Bacteria  normal  0.0373343  n/a   
 
 
-
 
NC_009052  Sbal_1198  positive regulator of sigma E, RseC/MucC  31.76 
 
 
157 aa  66.6  0.0000000001  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000634638  n/a   
 
 
-
 
NC_004347  SO_1345  sigma-E factor regulatory protein RseC  30.67 
 
 
157 aa  65.9  0.0000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_03001  sigma-E factor regulatory protein RseC  29.37 
 
 
148 aa  66.2  0.0000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0118803  n/a   
 
 
-
 
NC_013421  Pecwa_1201  SoxR reducing system protein RseC  28.87 
 
 
150 aa  66.2  0.0000000002  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.0000162902  n/a   
 
 
-
 
NC_012880  Dd703_2788  SoxR reducing system protein RseC  33.1 
 
 
155 aa  65.1  0.0000000004  Dickeya dadantii Ech703  Bacteria  hitchhiker  0.00872544  n/a   
 
 
-
 
NC_011080  SNSL254_A2847  SoxR reducing system protein RseC  32.17 
 
 
159 aa  63.5  0.000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.156123 
 
 
-
 
NC_009831  Ssed_1145  positive regulator of sigma E, RseC/MucC  29.87 
 
 
151 aa  63.5  0.000000001  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.000000688126  normal 
 
 
-
 
NC_010658  SbBS512_E2935  SoxR reducing system protein RseC  33.79 
 
 
159 aa  62.8  0.000000002  Shigella boydii CDC 3083-94  Bacteria  normal  0.151183  n/a   
 
 
-
 
NC_011312  VSAL_I2528  sigma-E factor regulatory protein RseC  27.89 
 
 
161 aa  62.4  0.000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02428  hypothetical protein  33.79 
 
 
159 aa  62.8  0.000000002  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2851  SoxR reducing system protein RseC  31.47 
 
 
159 aa  63.2  0.000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.74612 
 
 
-
 
NC_011094  SeSA_A2829  SoxR reducing system protein RseC  31.47 
 
 
159 aa  63.2  0.000000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_1098  positive regulator of sigma E, RseC/MucC  33.1 
 
 
159 aa  62.4  0.000000002  Escherichia coli DH1  Bacteria  decreased coverage  0.00219404  n/a   
 
 
-
 
NC_011149  SeAg_B2747  SoxR reducing system protein RseC  31.47 
 
 
159 aa  63.2  0.000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0281103  n/a   
 
 
-
 
NC_011205  SeD_A2963  SoxR reducing system protein RseC  31.47 
 
 
159 aa  63.2  0.000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.901953  normal 
 
 
-
 
NC_011353  ECH74115_3807  SoxR reducing system protein RseC  33.79 
 
 
159 aa  62.8  0.000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0524065  normal 
 
 
-
 
CP001509  ECD_02464  RseC protein involved in reduction of the SoxR iron-sulfur cluster  33.79 
 
 
159 aa  62.8  0.000000002  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1107  SoxR reducing system protein RseC  33.1 
 
 
159 aa  62.4  0.000000002  Escherichia coli ATCC 8739  Bacteria  normal  0.288168  normal 
 
 
-
 
NC_009801  EcE24377A_2856  SoxR reducing system protein RseC  33.79 
 
 
159 aa  62.8  0.000000002  Escherichia coli E24377A  Bacteria  normal  0.0186933  n/a   
 
 
-
 
NC_009800  EcHS_A2725  SoxR reducing system protein RseC  33.1 
 
 
159 aa  62.4  0.000000002  Escherichia coli HS  Bacteria  normal  0.334856  n/a   
 
 
-
 
NC_010498  EcSMS35_2723  SoxR reducing system protein RseC  31.47 
 
 
159 aa  62  0.000000003  Escherichia coli SMS-3-5  Bacteria  normal  0.149775  normal 
 
 
-
 
NC_008709  Ping_0068  sigma-E factor regulatory protein RseC  25.6 
 
 
149 aa  61.6  0.000000004  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.00000126596  normal  0.71927 
 
 
-
 
NC_009092  Shew_1051  positive regulator of sigma E, RseC/MucC  32.68 
 
 
158 aa  60.8  0.000000007  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000179706  normal 
 
 
-
 
NC_012912  Dd1591_1065  SoxR reducing system protein RseC  32.87 
 
 
156 aa  58.9  0.00000002  Dickeya zeae Ech1591  Bacteria  normal  0.148903  n/a   
 
 
-
 
NC_007954  Sden_2769  positive regulator of sigma(E), RseC/MucC  28.67 
 
 
177 aa  59.3  0.00000002  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000517336  n/a   
 
 
-
 
NC_003910  CPS_4126  sigma-E factor regulatory protein RseC  31.73 
 
 
159 aa  58.2  0.00000004  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1034  positive regulator of sigma E, RseC/MucC  27.21 
 
 
154 aa  57.4  0.00000008  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00221159  n/a   
 
 
-
 
NC_009783  VIBHAR_03539  positive regulator of sigma E activity  32.14 
 
 
156 aa  55.8  0.0000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_3057  SoxR reducing system protein RseC  30.99 
 
 
158 aa  54.7  0.0000004  Enterobacter sp. 638  Bacteria  normal  0.0908162  hitchhiker  0.000179243 
 
 
-
 
NC_013456  VEA_002494  sigma factor RpoE regulatory protein RseC  30.36 
 
 
156 aa  54.7  0.0000005  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000000204046  n/a   
 
 
-
 
NC_007298  Daro_1491  positive regulator of sigma(E), RseC/MucC  31.37 
 
 
180 aa  52.8  0.000002  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.392689 
 
 
-
 
NC_013223  Dret_1803  positive regulator of sigma E, RseC/MucC  33.85 
 
 
151 aa  50.1  0.00001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_1580  positive regulator of sigma E, RseC/MucC  27.4 
 
 
151 aa  48.5  0.00003  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0877  sigma-E factor regulatory protein RseC  28.35 
 
 
159 aa  48.9  0.00003  Shewanella amazonensis SB2B  Bacteria  normal  0.475594  normal  0.0507678 
 
 
-
 
NC_013223  Dret_0535  positive regulator of sigma E, RseC/MucC  33.33 
 
 
125 aa  48.1  0.00004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0290  positive regulator of sigma E, RseC/MucC  36.57 
 
 
148 aa  48.1  0.00005  Halorhodospira halophila SL1  Bacteria  normal  0.133613  n/a   
 
 
-
 
NC_007298  Daro_2023  positive regulator of sigma(E), RseC/MucC  24.49 
 
 
147 aa  47.8  0.00007  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.00574884  normal 
 
 
-
 
NC_011662  Tmz1t_2318  positive regulator of sigma E, RseC/MucC  31.71 
 
 
155 aa  46.6  0.0001  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2042  sigma-E factor regulatory protein RseC  30.07 
 
 
156 aa  47  0.0001  Vibrio cholerae O395  Bacteria  normal  0.436748  n/a   
 
 
-
 
NC_011899  Hore_13330  positive regulator of sigma E, RseC/MucC  26.95 
 
 
143 aa  45.1  0.0004  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00188105  n/a   
 
 
-
 
NC_013171  Apre_0914  positive regulator of sigma E, RseC/MucC  19.4 
 
 
138 aa  43.9  0.0009  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1473  positive regulator of sigma E, RseC/MucC  29.79 
 
 
126 aa  41.6  0.004  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1301  positive regulator of sigma E, RseC/MucC  22.95 
 
 
136 aa  41.2  0.006  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
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