More than 300 homologs were found in PanDaTox collection
for query gene Tcr_1382 on replicon NC_007520
Organism: Thiomicrospira crunogena XCL-2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007520  Tcr_1382  two component LuxR family transcriptional regulator  100 
 
 
232 aa  458  9.999999999999999e-129  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  36.65 
 
 
218 aa  151  1e-35  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal 
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  36.82 
 
 
217 aa  142  6e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_008751  Dvul_0670  two component LuxR family transcriptional regulator  37.33 
 
 
216 aa  139  3.9999999999999997e-32  Desulfovibrio vulgaris DP4  Bacteria  normal  0.267154  normal 
 
 
-
 
NC_013757  Gobs_2941  two component transcriptional regulator, LuxR family  35.06 
 
 
219 aa  138  8.999999999999999e-32  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.911135  n/a   
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  33.94 
 
 
215 aa  137  1e-31  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  33.94 
 
 
215 aa  137  1e-31  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  33.94 
 
 
215 aa  137  1e-31  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_1646  two component LuxR family transcriptional regulator  32.88 
 
 
219 aa  136  3.0000000000000003e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.92254 
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  35.1 
 
 
223 aa  134  8e-31  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_013235  Namu_5079  two component transcriptional regulator, LuxR family  32.14 
 
 
217 aa  134  9.999999999999999e-31  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.525358 
 
 
-
 
NC_013510  Tcur_0154  two component transcriptional regulator, LuxR family  33.77 
 
 
244 aa  134  9.999999999999999e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  35.29 
 
 
214 aa  132  3.9999999999999996e-30  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_013595  Sros_6032  response regulator receiver protein  33.48 
 
 
218 aa  132  6.999999999999999e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  0.53611  normal 
 
 
-
 
NC_011769  DvMF_1021  two component transcriptional regulator, LuxR family  37.79 
 
 
216 aa  130  2.0000000000000002e-29  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.794365 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  34.43 
 
 
242 aa  129  3e-29  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  33.03 
 
 
219 aa  127  1.0000000000000001e-28  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0121621 
 
 
-
 
NC_007947  Mfla_1714  two component LuxR family transcriptional regulator  34.84 
 
 
213 aa  127  1.0000000000000001e-28  Methylobacillus flagellatus KT  Bacteria  normal  0.975164  hitchhiker  0.000785935 
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  33.49 
 
 
219 aa  127  2.0000000000000002e-28  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1700  two component LuxR family transcriptional regulator  33.18 
 
 
213 aa  127  2.0000000000000002e-28  Opitutus terrae PB90-1  Bacteria  normal  normal  0.226192 
 
 
-
 
NC_010338  Caul_2685  two component LuxR family transcriptional regulator  33.33 
 
 
222 aa  127  2.0000000000000002e-28  Caulobacter sp. K31  Bacteria  normal  0.120511  normal 
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  31.84 
 
 
223 aa  125  4.0000000000000003e-28  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  34.21 
 
 
218 aa  125  4.0000000000000003e-28  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3390  LuxR family two component transcriptional regulator  34.39 
 
 
228 aa  125  4.0000000000000003e-28  Thermobispora bispora DSM 43833  Bacteria  normal  0.269937  normal 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  34.96 
 
 
213 aa  124  9e-28  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  35.85 
 
 
213 aa  124  1e-27  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  32.89 
 
 
218 aa  124  1e-27  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  32.89 
 
 
218 aa  124  1e-27  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0919  two component LuxR family transcriptional regulator  34.91 
 
 
214 aa  124  2e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  35.45 
 
 
215 aa  123  2e-27  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  32.11 
 
 
232 aa  123  3e-27  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_013739  Cwoe_1233  two component transcriptional regulator, LuxR family  32.42 
 
 
220 aa  122  3e-27  Conexibacter woesei DSM 14684  Bacteria  normal  0.681342  normal  0.792953 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  32.11 
 
 
206 aa  123  3e-27  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  35.35 
 
 
216 aa  123  3e-27  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  34.11 
 
 
216 aa  122  3e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2299  two component LuxR family transcriptional regulator  34.11 
 
 
221 aa  122  4e-27  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1883  two component transcriptional regulator, LuxR family  35.21 
 
 
222 aa  122  4e-27  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  33.03 
 
 
228 aa  122  6e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1873  response regulator receiver protein  32.87 
 
 
215 aa  122  6e-27  Shewanella amazonensis SB2B  Bacteria  normal  0.56104  normal 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  32.08 
 
 
213 aa  121  7e-27  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_003295  RSc2312  two-component response regulator transcription regulator protein  31.08 
 
 
238 aa  121  8e-27  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.500036 
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  32.46 
 
 
218 aa  120  9.999999999999999e-27  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_010117  COXBURSA331_A1168  LuxR family transcriptional regulator  33.33 
 
 
216 aa  120  9.999999999999999e-27  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  33.18 
 
 
214 aa  120  9.999999999999999e-27  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_013235  Namu_2635  two component transcriptional regulator, LuxR family  30.97 
 
 
217 aa  121  9.999999999999999e-27  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000528497  hitchhiker  0.00476816 
 
 
-
 
NC_009727  CBUD_0828  response regulator  33.33 
 
 
216 aa  120  1.9999999999999998e-26  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.0183204  n/a   
 
 
-
 
NC_013205  Aaci_0385  two component transcriptional regulator, LuxR family  32.74 
 
 
224 aa  120  1.9999999999999998e-26  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  32.57 
 
 
216 aa  120  1.9999999999999998e-26  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  33.03 
 
 
216 aa  119  3e-26  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  32.29 
 
 
228 aa  119  3e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6351  two component LuxR family transcriptional regulator  33.33 
 
 
244 aa  119  3e-26  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  31.65 
 
 
232 aa  119  3e-26  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1102  LuxR family DNA-binding response regulator  34.12 
 
 
214 aa  119  4.9999999999999996e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4715  Two component LuxR family transcriptional regulator  33.48 
 
 
264 aa  119  4.9999999999999996e-26  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_3764  response regulator receiver  34.55 
 
 
217 aa  119  4.9999999999999996e-26  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.321181  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  33.18 
 
 
228 aa  118  6e-26  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  30.14 
 
 
212 aa  118  6e-26  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4183  two component LuxR family transcriptional regulator  31.03 
 
 
220 aa  119  6e-26  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  35.51 
 
 
218 aa  118  7e-26  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  31.65 
 
 
232 aa  118  7e-26  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_003910  CPS_1260  putative nitrate/nitrite DNA-binding response regulator  33.18 
 
 
206 aa  118  9.999999999999999e-26  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010644  Emin_0306  two component LuxR family transcriptional regulator  34.42 
 
 
215 aa  117  9.999999999999999e-26  Elusimicrobium minutum Pei191  Bacteria  unclonable  0.000000000161342  hitchhiker  0.00000159266 
 
 
-
 
NC_009523  RoseRS_3278  two component LuxR family transcriptional regulator  31.88 
 
 
214 aa  118  9.999999999999999e-26  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.749326 
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  33.8 
 
 
217 aa  117  9.999999999999999e-26  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  33.03 
 
 
215 aa  118  9.999999999999999e-26  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  32.11 
 
 
228 aa  117  9.999999999999999e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0916709 
 
 
-
 
NC_009767  Rcas_3763  two component LuxR family transcriptional regulator  31.4 
 
 
221 aa  118  9.999999999999999e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0403461 
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  33.8 
 
 
217 aa  117  9.999999999999999e-26  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0896  LuxR family transcriptional regulator  32.88 
 
 
216 aa  117  1.9999999999999998e-25  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_3163  two component LuxR family transcriptional regulator  31.92 
 
 
203 aa  117  1.9999999999999998e-25  Pelobacter propionicus DSM 2379  Bacteria  normal  0.932633  n/a   
 
 
-
 
NC_009052  Sbal_1943  two component LuxR family transcriptional regulator  34.4 
 
 
214 aa  117  1.9999999999999998e-25  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  33.94 
 
 
218 aa  116  3e-25  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal 
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  34.86 
 
 
223 aa  116  3e-25  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  33.94 
 
 
218 aa  116  3e-25  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_013132  Cpin_2387  two component transcriptional regulator, LuxR family  32.11 
 
 
207 aa  116  3.9999999999999997e-25  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.132486  normal  0.384012 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  33 
 
 
208 aa  116  3.9999999999999997e-25  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_06630  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  35.16 
 
 
215 aa  116  3.9999999999999997e-25  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.252447  normal  0.303532 
 
 
-
 
NC_007298  Daro_2343  two component LuxR family transcriptional regulator  30.91 
 
 
211 aa  115  3.9999999999999997e-25  Dechloromonas aromatica RCB  Bacteria  normal  0.999882  normal  0.0841394 
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  33.8 
 
 
224 aa  116  3.9999999999999997e-25  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_010524  Lcho_0242  two component LuxR family transcriptional regulator  35 
 
 
211 aa  115  5e-25  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.000159114 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  32.74 
 
 
224 aa  115  6e-25  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_008009  Acid345_0268  two component LuxR family transcriptional regulator  33.01 
 
 
217 aa  115  6e-25  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.289536  normal 
 
 
-
 
NC_007908  Rfer_0894  two component LuxR family transcriptional regulator  33.19 
 
 
217 aa  115  6.9999999999999995e-25  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  32.6 
 
 
208 aa  115  7.999999999999999e-25  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0637899 
 
 
-
 
NC_011080  SNSL254_A1504  hypothetical protein  32.58 
 
 
212 aa  115  7.999999999999999e-25  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  hitchhiker  0.000000918459 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  34.98 
 
 
224 aa  114  8.999999999999998e-25  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  33.33 
 
 
224 aa  114  1.0000000000000001e-24  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_2293  LuxR family DNA-binding response regulator  30.45 
 
 
211 aa  114  1.0000000000000001e-24  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2437  two component transcriptional regulator, LuxR family  33.33 
 
 
218 aa  114  1.0000000000000001e-24  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2246  two component LuxR family transcriptional regulator  33.94 
 
 
214 aa  114  1.0000000000000001e-24  Shewanella baltica OS195  Bacteria  normal  0.0703025  hitchhiker  0.00413313 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  29.46 
 
 
218 aa  114  1.0000000000000001e-24  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008532  STER_1387  DNA-binding response regulator  34.11 
 
 
214 aa  114  1.0000000000000001e-24  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.00141106  n/a   
 
 
-
 
NC_013132  Cpin_2103  two component transcriptional regulator, LuxR family  32.42 
 
 
210 aa  114  2.0000000000000002e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A1950  hypothetical protein  32.58 
 
 
212 aa  113  2.0000000000000002e-24  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.0094858 
 
 
-
 
NC_007519  Dde_2674  two component LuxR family transcriptional regulator  32.58 
 
 
215 aa  113  2.0000000000000002e-24  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.721789  n/a   
 
 
-
 
NC_011149  SeAg_B1780  EsrB  32.58 
 
 
212 aa  114  2.0000000000000002e-24  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.111024  n/a   
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  29.82 
 
 
226 aa  113  2.0000000000000002e-24  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2132  two component LuxR family transcriptional regulator  31.65 
 
 
214 aa  114  2.0000000000000002e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0449794  n/a   
 
 
-
 
NC_011094  SeSA_A1489  EsrB  32.58 
 
 
212 aa  113  2.0000000000000002e-24  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.121116  normal  0.320198 
 
 
-
 
NC_010465  YPK_3919  two component LuxR family transcriptional regulator  31.8 
 
 
210 aa  113  2.0000000000000002e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
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