9 homologs were found in PanDaTox collection
for query gene TM1040_3851 on replicon NC_008042
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008042  TM1040_3851  hypothetical protein  100 
 
 
195 aa  399  1e-110  Ruegeria sp. TM1040  Bacteria  normal  normal  0.855967 
 
 
-
 
NC_008044  TM1040_0026  hypothetical protein  31.28 
 
 
199 aa  96.7  2e-19  Ruegeria sp. TM1040  Bacteria  normal  0.0468682  normal  0.252109 
 
 
-
 
NC_007493  RSP_1154  hypothetical protein  29.95 
 
 
204 aa  92.4  4e-18  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2815  hypothetical protein  29.95 
 
 
204 aa  92  4e-18  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.447323  normal 
 
 
-
 
NC_009428  Rsph17025_2773  hypothetical protein  27.92 
 
 
204 aa  82.8  3e-15  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2607  hypothetical protein  29.44 
 
 
193 aa  67.4  1e-10  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.691654 
 
 
-
 
NC_007802  Jann_0227  hypothetical protein  26.29 
 
 
198 aa  65.9  4e-10  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0195  hypothetical protein  23.98 
 
 
239 aa  47  0.0002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.296411  normal  0.846633 
 
 
-
 
NC_009952  Dshi_3587  hypothetical protein  24.39 
 
 
200 aa  42.4  0.004  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
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