More than 300 homologs were found in PanDaTox collection
for query gene TM1040_3623 on replicon NC_008043
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011989  Avi_0209  phenylalanyl-tRNA synthetase subunit beta  50.74 
 
 
807 aa  782    Agrobacterium vitis S4  Bacteria  normal  0.212777  n/a   
 
 
-
 
NC_009719  Plav_0221  phenylalanyl-tRNA synthetase, beta subunit  51.71 
 
 
812 aa  757    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0797  phenylalanyl-tRNA synthetase subunit beta  53.43 
 
 
804 aa  778    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_3487  phenylalanyl-tRNA synthetase subunit beta  52.5 
 
 
808 aa  782    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0237  phenylalanyl-tRNA synthetase subunit beta  71.3 
 
 
798 aa  1145    Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR2123  phenylalanyl-tRNA synthetase subunit beta  54.04 
 
 
804 aa  791    Brucella suis 1330  Bacteria  normal  0.615312  n/a   
 
 
-
 
NC_009511  Swit_2428  phenylalanyl-tRNA synthetase subunit beta  48.68 
 
 
792 aa  668    Sphingomonas wittichii RW1  Bacteria  normal  normal  0.153279 
 
 
-
 
NC_010172  Mext_1630  phenylalanyl-tRNA synthetase, beta subunit  52.33 
 
 
807 aa  784    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0126985 
 
 
-
 
NC_009428  Rsph17025_2491  phenylalanyl-tRNA synthetase subunit beta  63.13 
 
 
805 aa  1012    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0065  phenylalanyl-tRNA synthetase subunit beta  48.85 
 
 
812 aa  719    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.145265 
 
 
-
 
NC_010338  Caul_1188  phenylalanyl-tRNA synthetase subunit beta  48.73 
 
 
812 aa  697    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0036  phenylalanyl-tRNA synthetase subunit beta  50.12 
 
 
803 aa  728    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.393053  n/a   
 
 
-
 
NC_007493  RSP_1761  phenylalanyl-tRNA synthetase subunit beta  64.36 
 
 
805 aa  1034    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1838  phenylalanyl-tRNA synthetase, beta subunit  50 
 
 
810 aa  729    Methylocella silvestris BL2  Bacteria  n/a    normal  0.0684561 
 
 
-
 
NC_011757  Mchl_1912  phenylalanyl-tRNA synthetase, beta subunit  48.89 
 
 
850 aa  748    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.24608 
 
 
-
 
NC_011894  Mnod_5551  phenylalanyl-tRNA synthetase, beta subunit  52.88 
 
 
808 aa  792    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.325824  n/a   
 
 
-
 
NC_007643  Rru_A3524  phenylalanyl-tRNA synthetase subunit beta  50.62 
 
 
800 aa  722    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3155  phenylalanyl-tRNA synthetase, beta subunit  51.66 
 
 
806 aa  780    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0047  phenylalanyl-tRNA synthetase subunit beta  50.18 
 
 
802 aa  728    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4536  phenylalanyl-tRNA synthetase subunit beta  51.47 
 
 
807 aa  793    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.140615 
 
 
-
 
NC_007802  Jann_0454  phenylalanyl-tRNA synthetase subunit beta  70.66 
 
 
800 aa  1151    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1604  phenylalanyl-tRNA synthetase, beta subunit  52.46 
 
 
807 aa  786    Methylobacterium populi BJ001  Bacteria  normal  0.140835  normal  0.0323303 
 
 
-
 
NC_007925  RPC_0444  phenylalanyl-tRNA synthetase subunit beta  50.55 
 
 
803 aa  737    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.341552  normal 
 
 
-
 
NC_011369  Rleg2_4271  phenylalanyl-tRNA synthetase subunit beta  51.28 
 
 
810 aa  787    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0162  phenylalanyl-tRNA synthetase subunit beta  50.55 
 
 
824 aa  745    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.676244  normal 
 
 
-
 
NC_007964  Nham_0073  phenylalanyl-tRNA synthetase subunit beta  49.76 
 
 
817 aa  719    Nitrobacter hamburgensis X14  Bacteria  normal  0.252873  n/a   
 
 
-
 
NC_009505  BOV_2039  phenylalanyl-tRNA synthetase subunit beta  54.04 
 
 
804 aa  790    Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0212  phenylalanyl-tRNA synthetase subunit beta  51.54 
 
 
802 aa  749    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3623  phenylalanyl-tRNA synthetase subunit beta  100 
 
 
798 aa  1618    Ruegeria sp. TM1040  Bacteria  normal  normal  0.117267 
 
 
-
 
NC_010511  M446_5318  phenylalanyl-tRNA synthetase, beta subunit  52.33 
 
 
808 aa  777    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0273897 
 
 
-
 
NC_011365  Gdia_3094  phenylalanyl-tRNA synthetase subunit beta  45.8 
 
 
820 aa  662    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.067961 
 
 
-
 
NC_008254  Meso_0677  phenylalanyl-tRNA synthetase subunit beta  52.59 
 
 
801 aa  795    Chelativorans sp. BNC1  Bacteria  normal  0.443307  n/a   
 
 
-
 
NC_008783  BARBAKC583_1312  phenylalanyl-tRNA synthetase subunit beta  48.28 
 
 
803 aa  693    Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_0132  phenylalanyl-tRNA synthetase subunit beta  48.64 
 
 
799 aa  656    Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1930  phenylalanyl-tRNA synthetase, beta subunit  51.23 
 
 
804 aa  730    Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0326717 
 
 
-
 
NC_010581  Bind_3247  phenylalanyl-tRNA synthetase, beta subunit  49.88 
 
 
806 aa  763    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2262  phenylalanyl-tRNA synthetase subunit beta  71.27 
 
 
795 aa  1117    Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.283733 
 
 
-
 
NC_009049  Rsph17029_0407  phenylalanyl-tRNA synthetase subunit beta  64.49 
 
 
805 aa  1036    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.70562  normal 
 
 
-
 
NC_007794  Saro_0689  phenylalanyl-tRNA synthetase subunit beta  46.37 
 
 
796 aa  630  1e-179  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.428867  n/a   
 
 
-
 
NC_009484  Acry_0361  phenylalanyl-tRNA synthetase subunit beta  44.03 
 
 
827 aa  593  1e-168  Acidiphilium cryptum JF-5  Bacteria  normal  0.996315  n/a   
 
 
-
 
NC_002978  WD0425  phenylalanyl-tRNA synthetase subunit beta  41.21 
 
 
779 aa  564  1.0000000000000001e-159  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_2783  phenylalanyl-tRNA synthetase subunit beta  43.3 
 
 
798 aa  545  1e-153  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_007354  Ecaj_0587  phenylalanyl-tRNA synthetase subunit beta  36.58 
 
 
785 aa  504  1e-141  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_007799  ECH_0434  phenylalanyl-tRNA synthetase subunit beta  35.79 
 
 
788 aa  501  1e-140  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0368  phenylalanyl-tRNA synthetase beta subunit  35.5 
 
 
796 aa  464  1e-129  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1582  phenylalanyl-tRNA synthetase subunit beta  35.19 
 
 
816 aa  454  1.0000000000000001e-126  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0763  phenylalanyl-tRNA synthetase subunit beta  35.63 
 
 
797 aa  452  1.0000000000000001e-126  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2592  phenylalanyl-tRNA synthetase, beta subunit  34.99 
 
 
794 aa  451  1e-125  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.0126631 
 
 
-
 
NC_011138  MADE_02445  phenylalanyl-tRNA synthetase subunit beta  34.76 
 
 
795 aa  444  1e-123  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.202536  n/a   
 
 
-
 
NC_009439  Pmen_1981  phenylalanyl-tRNA synthetase subunit beta  34.44 
 
 
792 aa  441  9.999999999999999e-123  Pseudomonas mendocina ymp  Bacteria  normal  0.134276  normal  0.20776 
 
 
-
 
NC_009708  YpsIP31758_1717  phenylalanyl-tRNA synthetase subunit beta  33.9 
 
 
795 aa  433  1e-120  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.00142202  n/a   
 
 
-
 
NC_010159  YpAngola_A2620  phenylalanyl-tRNA synthetase subunit beta  33.9 
 
 
795 aa  434  1e-120  Yersinia pestis Angola  Bacteria  hitchhiker  0.00723547  normal 
 
 
-
 
NC_011312  VSAL_I1732  phenylalanyl-tRNA synthetase subunit beta  34.28 
 
 
795 aa  433  1e-120  Aliivibrio salmonicida LFI1238  Bacteria  hitchhiker  0.00878056  n/a   
 
 
-
 
NC_009457  VC0395_A0844  phenylalanyl-tRNA synthetase subunit beta  34.19 
 
 
795 aa  434  1e-120  Vibrio cholerae O395  Bacteria  hitchhiker  0.000000000714216  n/a   
 
 
-
 
NC_010465  YPK_1825  phenylalanyl-tRNA synthetase subunit beta  33.9 
 
 
795 aa  433  1e-120  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.713489  n/a   
 
 
-
 
NC_009997  Sbal195_1908  phenylalanyl-tRNA synthetase subunit beta  34.15 
 
 
795 aa  432  1e-119  Shewanella baltica OS195  Bacteria  hitchhiker  0.00255913  normal 
 
 
-
 
NC_012560  Avin_20470  phenylalanyl-tRNA synthetase subunit beta  33.62 
 
 
792 aa  430  1e-119  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1874  phenylalanyl-tRNA synthetase subunit beta  34.03 
 
 
795 aa  430  1e-119  Shewanella baltica OS155  Bacteria  decreased coverage  0.000755096  n/a   
 
 
-
 
NC_004578  PSPTO_2383  phenylalanyl-tRNA synthetase, beta subunit  34.93 
 
 
792 aa  428  1e-118  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295144  n/a   
 
 
-
 
NC_010501  PputW619_1972  phenylalanyl-tRNA synthetase subunit beta  34.36 
 
 
793 aa  426  1e-118  Pseudomonas putida W619  Bacteria  normal  normal  0.025038 
 
 
-
 
NC_007298  Daro_2672  phenylalanyl-tRNA synthetase subunit beta  35.82 
 
 
794 aa  428  1e-118  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1936  phenylalanyl-tRNA synthetase subunit beta  33.95 
 
 
792 aa  426  1e-118  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0927196  normal 
 
 
-
 
NC_012917  PC1_1893  phenylalanyl-tRNA synthetase subunit beta  33.46 
 
 
795 aa  427  1e-118  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003705  phenylalanyl-tRNA synthetase beta chain  34.18 
 
 
801 aa  426  1e-118  Vibrio sp. Ex25  Bacteria  normal  0.374236  n/a   
 
 
-
 
NC_008740  Maqu_2056  phenylalanyl-tRNA synthetase subunit beta  33.09 
 
 
790 aa  427  1e-118  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0432  phenylalanyl-tRNA synthetase subunit beta  34.44 
 
 
792 aa  427  1e-118  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1809  phenylalanyl-tRNA synthetase subunit beta  34.03 
 
 
795 aa  427  1e-118  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2168  phenylalanyl-tRNA synthetase subunit beta  33.91 
 
 
795 aa  426  1e-118  Shewanella sp. MR-7  Bacteria  normal  0.0570245  normal 
 
 
-
 
NC_008463  PA14_28710  phenylalanyl-tRNA synthetase subunit beta  35.05 
 
 
792 aa  426  1e-118  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.458463  decreased coverage  0.000000000220958 
 
 
-
 
NC_008577  Shewana3_1864  phenylalanyl-tRNA synthetase subunit beta  33.87 
 
 
795 aa  426  1e-118  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2509  phenylalanyl-tRNA synthetase subunit beta  35.05 
 
 
792 aa  427  1e-118  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2470  phenylalanyl-tRNA synthetase subunit beta  34.43 
 
 
793 aa  423  1e-117  Pseudomonas putida KT2440  Bacteria  normal  0.24212  normal 
 
 
-
 
NC_011663  Sbal223_2418  phenylalanyl-tRNA synthetase subunit beta  33.78 
 
 
795 aa  426  1e-117  Shewanella baltica OS223  Bacteria  decreased coverage  0.000318266  hitchhiker  0.0000890505 
 
 
-
 
NC_004347  SO_2086  phenylalanyl-tRNA synthetase subunit beta  33.94 
 
 
795 aa  424  1e-117  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009512  Pput_3220  phenylalanyl-tRNA synthetase subunit beta  34.55 
 
 
793 aa  423  1e-117  Pseudomonas putida F1  Bacteria  normal  normal  0.363224 
 
 
-
 
NC_009665  Shew185_1901  phenylalanyl-tRNA synthetase subunit beta  33.78 
 
 
795 aa  426  1e-117  Shewanella baltica OS185  Bacteria  hitchhiker  0.00294003  n/a   
 
 
-
 
NC_013421  Pecwa_2185  phenylalanyl-tRNA synthetase subunit beta  34.23 
 
 
795 aa  426  1e-117  Pectobacterium wasabiae WPP163  Bacteria  normal  0.861692  n/a   
 
 
-
 
NC_009438  Sputcn32_1829  phenylalanyl-tRNA synthetase subunit beta  34.03 
 
 
795 aa  421  1e-116  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.00000186413  n/a   
 
 
-
 
NC_009092  Shew_2215  phenylalanyl-tRNA synthetase subunit beta  33.78 
 
 
795 aa  421  1e-116  Shewanella loihica PV-4  Bacteria  normal  normal  0.188862 
 
 
-
 
NC_007005  Psyr_2167  phenylalanyl-tRNA synthetase subunit beta  34.44 
 
 
792 aa  422  1e-116  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2149  phenylalanyl-tRNA synthetase subunit beta  32.6 
 
 
795 aa  422  1e-116  Serratia proteamaculans 568  Bacteria  normal  0.625217  normal 
 
 
-
 
NC_008309  HS_0861  phenylalanyl-tRNA synthetase subunit beta  35.59 
 
 
795 aa  422  1e-116  Haemophilus somnus 129PT  Bacteria  normal  0.0924508  n/a   
 
 
-
 
NC_013889  TK90_0917  phenylalanyl-tRNA synthetase, beta subunit  33.99 
 
 
786 aa  418  9.999999999999999e-116  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1952  phenylalanyl-tRNA synthetase subunit beta  33.41 
 
 
795 aa  417  9.999999999999999e-116  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3476  phenylalanyl-tRNA synthetase subunit beta  34.06 
 
 
793 aa  418  9.999999999999999e-116  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.00698698 
 
 
-
 
NC_009831  Ssed_2597  phenylalanyl-tRNA synthetase subunit beta  33.5 
 
 
795 aa  419  9.999999999999999e-116  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0200655  normal 
 
 
-
 
NC_012791  Vapar_1875  phenylalanyl-tRNA synthetase subunit beta  34.73 
 
 
813 aa  413  1e-114  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1449  phenylalanyl-tRNA synthetase subunit beta  33.01 
 
 
795 aa  414  1e-114  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2007  phenylalanyl-tRNA synthetase subunit beta  33.01 
 
 
795 aa  414  1e-114  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.693647 
 
 
-
 
NC_008782  Ajs_2395  phenylalanyl-tRNA synthetase subunit beta  34.45 
 
 
814 aa  413  1e-114  Acidovorax sp. JS42  Bacteria  normal  0.990048  normal 
 
 
-
 
NC_007520  Tcr_1662  phenylalanyl-tRNA synthetase, beta subunit  32.2 
 
 
793 aa  414  1e-114  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1956  phenylalanyl-tRNA synthetase subunit beta  33.37 
 
 
795 aa  414  1e-114  Dickeya zeae Ech1591  Bacteria  normal  0.186913  n/a   
 
 
-
 
NC_011094  SeSA_A1433  phenylalanyl-tRNA synthetase subunit beta  33.01 
 
 
795 aa  415  1e-114  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.030197 
 
 
-
 
NC_007947  Mfla_1998  phenylalanyl-tRNA synthetase beta subunit  34.53 
 
 
784 aa  414  1e-114  Methylobacillus flagellatus KT  Bacteria  normal  0.109142  normal 
 
 
-
 
NC_007954  Sden_1603  phenylalanyl-tRNA synthetase subunit beta  33.21 
 
 
795 aa  415  1e-114  Shewanella denitrificans OS217  Bacteria  normal  0.643795  n/a   
 
 
-
 
NC_011149  SeAg_B1835  phenylalanyl-tRNA synthetase subunit beta  33.01 
 
 
795 aa  415  1e-114  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.000347523  n/a   
 
 
-
 
NC_011901  Tgr7_1455  phenylalanyl-tRNA synthetase, beta subunit  34.57 
 
 
789 aa  412  1e-114  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.105434  n/a   
 
 
-
 
NC_011083  SeHA_C1466  phenylalanyl-tRNA synthetase subunit beta  33.01 
 
 
795 aa  415  1e-114  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_02093  phenylalanyl-tRNA synthetase subunit beta  33.09 
 
 
806 aa  410  1e-113  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_1729  phenylalanyl-tRNA synthetase subunit beta  33.37 
 
 
795 aa  410  1e-113  Enterobacter sp. 638  Bacteria  normal  normal  0.404063 
 
 
-
 
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