More than 300 homologs were found in PanDaTox collection
for query gene TM1040_1495 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_1495  binding-protein-dependent transport systems inner membrane component  100 
 
 
305 aa  603  9.999999999999999e-173  Ruegeria sp. TM1040  Bacteria  normal  0.473602  normal 
 
 
-
 
NC_009952  Dshi_1372  binding-protein-dependent transport systems inner membrane component  74.01 
 
 
305 aa  452  1.0000000000000001e-126  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.856164  normal  0.860518 
 
 
-
 
NC_009428  Rsph17025_1464  binding-protein-dependent transport systems inner membrane component  67.55 
 
 
287 aa  388  1e-107  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1814  binding-protein-dependent transport systems inner membrane component  68.98 
 
 
287 aa  375  1e-103  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0476587  normal  0.305557 
 
 
-
 
NC_007493  RSP_0181  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  68.98 
 
 
311 aa  374  1e-102  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.121482  n/a   
 
 
-
 
NC_009636  Smed_2371  binding-protein-dependent transport systems inner membrane component  64.98 
 
 
294 aa  351  8e-96  Sinorhizobium medicae WSM419  Bacteria  normal  0.91742  normal  0.325627 
 
 
-
 
NC_009667  Oant_0345  binding-protein-dependent transport systems inner membrane component  63.58 
 
 
297 aa  342  4e-93  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3459  ABC transporter  61.46 
 
 
288 aa  340  2e-92  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2045  binding-protein-dependent transport systems inner membrane component  61.13 
 
 
312 aa  328  6e-89  Chelativorans sp. BNC1  Bacteria  normal  0.613322  n/a   
 
 
-
 
NC_007802  Jann_2701  binding-protein-dependent transport systems inner membrane component  60.14 
 
 
315 aa  325  4.0000000000000003e-88  Jannaschia sp. CCS1  Bacteria  normal  0.725502  normal  0.78823 
 
 
-
 
NC_011369  Rleg2_3041  binding-protein-dependent transport systems inner membrane component  51.27 
 
 
314 aa  300  2e-80  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.819345  normal 
 
 
-
 
NC_012850  Rleg_3296  binding-protein-dependent transport systems inner membrane component  50.32 
 
 
309 aa  296  4e-79  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.913784  normal  0.0841796 
 
 
-
 
NC_007643  Rru_A3454  binding-protein dependent transport system inner membrane protein  55.36 
 
 
298 aa  289  5.0000000000000004e-77  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1082  binding-protein-dependent transport systems inner membrane component  55.81 
 
 
305 aa  289  5.0000000000000004e-77  Methylobacterium populi BJ001  Bacteria  normal  0.779888  normal  0.0329883 
 
 
-
 
NC_010172  Mext_1732  binding-protein-dependent transport systems inner membrane component  56.6 
 
 
302 aa  281  8.000000000000001e-75  Methylobacterium extorquens PA1  Bacteria  normal  0.244285  normal 
 
 
-
 
NC_011757  Mchl_2051  binding-protein-dependent transport systems inner membrane component  64.1 
 
 
305 aa  279  5e-74  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.418777 
 
 
-
 
NC_009485  BBta_6032  putative ABC transporter, permease protein  53.87 
 
 
285 aa  260  2e-68  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_0036  binding-protein-dependent transport systems inner membrane component  45.67 
 
 
292 aa  255  7e-67  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1884  binding-protein-dependent transport systems inner membrane component  42.06 
 
 
307 aa  199  3.9999999999999996e-50  Meiothermus ruber DSM 1279  Bacteria  normal  0.665089  normal  0.160596 
 
 
-
 
NC_014212  Mesil_2100  binding-protein-dependent transport systems inner membrane component  45.3 
 
 
275 aa  199  6e-50  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  34.68 
 
 
268 aa  129  5.0000000000000004e-29  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  33.76 
 
 
258 aa  128  2.0000000000000002e-28  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  35.78 
 
 
246 aa  125  7e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  34.44 
 
 
283 aa  123  4e-27  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  33.6 
 
 
256 aa  120  3.9999999999999996e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  39.79 
 
 
273 aa  119  4.9999999999999996e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  36.55 
 
 
281 aa  119  6e-26  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  34.24 
 
 
265 aa  119  7e-26  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_011831  Cagg_1308  binding-protein-dependent transport systems inner membrane component  35.26 
 
 
254 aa  117  1.9999999999999998e-25  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0000169849 
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  42.86 
 
 
273 aa  117  3e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_24180  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  35.47 
 
 
302 aa  115  1.0000000000000001e-24  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
288 aa  114  3e-24  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
274 aa  113  5e-24  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  33.65 
 
 
282 aa  112  7.000000000000001e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_014212  Mesil_2099  binding-protein-dependent transport systems inner membrane component  30.87 
 
 
306 aa  111  1.0000000000000001e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3871  binding-protein-dependent transport systems inner membrane component  33.61 
 
 
280 aa  111  1.0000000000000001e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.208081  n/a   
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
282 aa  112  1.0000000000000001e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  34.35 
 
 
253 aa  111  1.0000000000000001e-23  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1883  binding-protein-dependent transport systems inner membrane component  29.56 
 
 
322 aa  110  3e-23  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.167871 
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
281 aa  109  5e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  37.3 
 
 
250 aa  109  5e-23  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
257 aa  109  6e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  34.36 
 
 
268 aa  109  6e-23  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  31.67 
 
 
298 aa  108  1e-22  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  33.77 
 
 
251 aa  108  1e-22  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  33.33 
 
 
251 aa  107  4e-22  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  37.7 
 
 
250 aa  105  7e-22  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  33.33 
 
 
250 aa  105  7e-22  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  35.03 
 
 
253 aa  105  7e-22  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  32.76 
 
 
250 aa  105  8e-22  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  33.33 
 
 
250 aa  105  1e-21  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  33.33 
 
 
250 aa  105  1e-21  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  33.33 
 
 
250 aa  105  1e-21  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  33.48 
 
 
250 aa  104  1e-21  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0344  binding-protein-dependent transport systems inner membrane component  29.87 
 
 
286 aa  105  1e-21  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.113814  n/a   
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
289 aa  104  2e-21  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  34.95 
 
 
268 aa  104  2e-21  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  32.74 
 
 
257 aa  103  3e-21  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
251 aa  103  3e-21  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  34.66 
 
 
258 aa  103  4e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_008044  TM1040_1494  binding-protein-dependent transport systems inner membrane component  30.53 
 
 
281 aa  103  4e-21  Ruegeria sp. TM1040  Bacteria  normal  0.58323  normal 
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  34.38 
 
 
308 aa  103  4e-21  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3116  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
272 aa  103  5e-21  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.025765  normal 
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
264 aa  103  5e-21  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  39.01 
 
 
254 aa  103  5e-21  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  32.38 
 
 
264 aa  102  6e-21  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  31.4 
 
 
264 aa  102  6e-21  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  36.61 
 
 
250 aa  102  6e-21  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  33.15 
 
 
257 aa  102  1e-20  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  32.82 
 
 
271 aa  101  1e-20  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_3036  binding-protein-dependent transport systems inner membrane component  34.43 
 
 
266 aa  102  1e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  30.49 
 
 
249 aa  101  1e-20  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  29.48 
 
 
286 aa  100  2e-20  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3934  binding-protein-dependent transport systems inner membrane component  32.29 
 
 
278 aa  100  2e-20  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.421742  normal 
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  32.19 
 
 
265 aa  100  3e-20  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  32.62 
 
 
257 aa  100  4e-20  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  32.33 
 
 
265 aa  100  4e-20  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  32.33 
 
 
265 aa  100  4e-20  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  32.62 
 
 
257 aa  100  4e-20  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  32.62 
 
 
257 aa  99.8  5e-20  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  32.19 
 
 
257 aa  99.8  5e-20  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  32.62 
 
 
257 aa  99.8  5e-20  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_014151  Cfla_1434  binding-protein-dependent transport systems inner membrane component  36.63 
 
 
321 aa  99.4  7e-20  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.441348  normal  0.835016 
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
255 aa  99.4  7e-20  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2762  binding-protein-dependent transport systems inner membrane component  35.18 
 
 
250 aa  99  9e-20  Conexibacter woesei DSM 14684  Bacteria  normal  0.0247808  normal  0.0244453 
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  29.13 
 
 
254 aa  98.6  1e-19  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  33.18 
 
 
259 aa  98.6  1e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_012880  Dd703_0037  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
362 aa  98.6  1e-19  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  32.19 
 
 
255 aa  98.6  1e-19  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3460  ABC transporter membrane spanning protein  29.79 
 
 
288 aa  98.6  1e-19  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2576  binding-protein-dependent transport systems inner membrane component  39.26 
 
 
306 aa  97.4  2e-19  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  32.33 
 
 
267 aa  98.2  2e-19  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_007802  Jann_1473  binding-protein-dependent transport systems inner membrane component  34.58 
 
 
283 aa  97.8  2e-19  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2700  binding-protein-dependent transport systems inner membrane component  34.9 
 
 
316 aa  97.4  2e-19  Jannaschia sp. CCS1  Bacteria  normal  0.505407  normal  0.565906 
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
256 aa  97.8  2e-19  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  32.83 
 
 
261 aa  96.7  4e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  31.92 
 
 
279 aa  97.1  4e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1263  ABC transporter permease  31.1 
 
 
262 aa  96.7  4e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.165267 
 
 
-
 
NC_009952  Dshi_1382  binding-protein-dependent transport systems inner membrane component  34.21 
 
 
285 aa  96.3  5e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.13305  normal 
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  30.92 
 
 
266 aa  96.3  6e-19  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
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