10 homologs were found in PanDaTox collection
for query gene TM1040_0076 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_0076  lipopolysaccharide biosynthesis protein-like  100 
 
 
385 aa  793    Ruegeria sp. TM1040  Bacteria  normal  0.39731  normal 
 
 
-
 
NC_007801  Jann_4277  lipopolysaccharide biosynthesis protein-like  35.34 
 
 
359 aa  141  1.9999999999999998e-32  Jannaschia sp. CCS1  Bacteria  normal  normal  0.52167 
 
 
-
 
NC_007925  RPC_4196  putative glycosyltransferase  28.51 
 
 
321 aa  87.4  4e-16  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.97214 
 
 
-
 
NC_009667  Oant_2452  lipopolysaccharide biosynthesis protein-like protein  27.1 
 
 
418 aa  80.1  0.00000000000007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1351  lipopolysaccharide biosynthesis protein-like protein  25.45 
 
 
326 aa  64.7  0.000000003  Acidiphilium cryptum JF-5  Bacteria  normal  0.054714  n/a   
 
 
-
 
NC_008527  LACR_0212  lipopolysaccharide biosynthesis protein  25.6 
 
 
588 aa  61.6  0.00000002  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4195  Rhamnan synthesis F  24.52 
 
 
631 aa  57  0.0000006  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1172  lipopolysaccharide biosynthesis protein-like  26.8 
 
 
325 aa  51.2  0.00003  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.535151  n/a   
 
 
-
 
NC_010816  BLD_1572  lipopolysaccharide biosynthesis protein  24.42 
 
 
666 aa  51.2  0.00003  Bifidobacterium longum DJO10A  Bacteria  normal  0.211326  n/a   
 
 
-
 
NC_007516  Syncc9605_0194  lipopolysaccharide biosynthesis protein-like  24.52 
 
 
1030 aa  50.1  0.00006  Synechococcus sp. CC9605  Bacteria  normal  0.478179  normal  0.202033 
 
 
-
 
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