98 homologs were found in PanDaTox collection
for query gene TM1040_0065 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_0065  putative anti-sigma regulatory factor, serine/threonine protein kinase  100 
 
 
146 aa  301  2.0000000000000002e-81  Ruegeria sp. TM1040  Bacteria  normal  0.459983  normal 
 
 
-
 
NC_009952  Dshi_0072  serine-protein kinase  40.16 
 
 
169 aa  95.1  3e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.00642578 
 
 
-
 
NC_009049  Rsph17029_0150  putative anti-sigma regulatory factor, serine/threonine protein kinase  44.55 
 
 
180 aa  77  0.00000000000009  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.460194 
 
 
-
 
NC_007493  RSP_1500  anti-sigma regulatory kinase  42.45 
 
 
180 aa  72.8  0.000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0912  serine-protein kinase RsbW  40.21 
 
 
160 aa  70.5  0.000000000007  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.0000281084  n/a   
 
 
-
 
NC_006274  BCZK0895  serine-protein kinase RsbW  40.21 
 
 
160 aa  70.5  0.000000000007  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0902  serine-protein kinase RsbW  39.18 
 
 
160 aa  70.5  0.000000000008  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.954937  n/a   
 
 
-
 
NC_003909  BCE_1085  serine-protein kinase RsbW  39.18 
 
 
160 aa  69.7  0.00000000001  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4271  serine-protein kinase RsbW  39.18 
 
 
160 aa  69.3  0.00000000001  Bacillus cereus G9842  Bacteria  normal  0.0304057  hitchhiker  0.00223112 
 
 
-
 
NC_011725  BCB4264_A1032  serine-protein kinase RsbW  39.18 
 
 
160 aa  68.9  0.00000000002  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_4052  putative anti-sigma regulatory factor (serine/threonine protein kinase)  39.39 
 
 
170 aa  69.3  0.00000000002  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_0991  serine-protein kinase RsbW  39.18 
 
 
160 aa  68.9  0.00000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1067  serine-protein kinase RsbW  39.18 
 
 
160 aa  68.9  0.00000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  4.13388e-38 
 
 
-
 
NC_005945  BAS0927  serine-protein kinase RsbW  39.18 
 
 
160 aa  68.9  0.00000000002  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1158  serine-protein kinase RsbW  39.58 
 
 
160 aa  68.6  0.00000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2905  putative anti-sigma regulatory factor, serine/threonine protein kinase  38.38 
 
 
149 aa  64.7  0.0000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.94653  normal  0.27326 
 
 
-
 
NC_011832  Mpal_1929  putative anti-sigma regulatory factor, serine/threonine protein kinase  29.51 
 
 
139 aa  63.9  0.0000000007  Methanosphaerula palustris E1-9c  Archaea  normal  0.0887571  normal  0.148865 
 
 
-
 
NC_011831  Cagg_2555  anti-sigma-factor antagonist  33.67 
 
 
249 aa  63.2  0.000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1422  anti-sigma-factor antagonist  30.84 
 
 
250 aa  63.2  0.000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3034  putative anti-sigma regulatory factor, serine/threonine protein kinase  29.91 
 
 
155 aa  63.2  0.000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  decreased coverage  0.00000275353 
 
 
-
 
NC_009712  Mboo_1160  putative anti-sigma regulatory factor, serine/threonine protein kinase  30.23 
 
 
138 aa  62.4  0.000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.620968  normal 
 
 
-
 
NC_013216  Dtox_0933  putative anti-sigma regulatory factor, serine/threonine protein kinase  32.06 
 
 
142 aa  62  0.000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0815302  normal  0.189071 
 
 
-
 
NC_011884  Cyan7425_0700  putative anti-sigma regulatory factor, serine/threonine protein kinase  33.94 
 
 
136 aa  61.2  0.000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_0863  putative anti-sigma regulatory factor  33.33 
 
 
143 aa  59.3  0.00000002  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.286315 
 
 
-
 
NC_007512  Plut_1040  putative anti-sigma regulatory factor (serine/threonine protein kinase)  33.33 
 
 
143 aa  59.3  0.00000002  Chlorobium luteolum DSM 273  Bacteria  normal  0.469899  normal  0.536702 
 
 
-
 
NC_014248  Aazo_1701  putative anti-sigma regulatory factor serine/threonine protein kinase  30.63 
 
 
140 aa  57.8  0.00000005  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0819  putative anti-sigma regulatory factor, serine/threonine protein kinase  30.28 
 
 
185 aa  57.8  0.00000005  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3290  putative anti-sigma regulatory factor, serine/threonine protein kinase  32.2 
 
 
160 aa  57.4  0.00000007  Roseiflexus sp. RS-1  Bacteria  normal  0.018648  normal 
 
 
-
 
NC_009972  Haur_1624  putative anti-sigma regulatory factor, serine/threonine protein kinase  29.31 
 
 
154 aa  55.5  0.0000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1749  putative anti-sigma regulatory factor, serine/threonine protein kinase  31.07 
 
 
147 aa  54.7  0.0000004  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_3443  putative anti-sigma regulatory factor (Ser/Thr protein kinase)  33.04 
 
 
147 aa  54.7  0.0000004  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0106512  normal 
 
 
-
 
NC_011146  Gbem_2468  putative anti-sigma regulatory factor, serine/threonine protein kinase  30.69 
 
 
147 aa  54.3  0.0000006  Geobacter bemidjiensis Bem  Bacteria  normal  0.0214018  n/a   
 
 
-
 
NC_013411  GYMC61_3487  serine-protein kinase RsbW  32.29 
 
 
162 aa  53.9  0.0000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008554  Sfum_2452  putative anti-sigma regulatory factor, serine/threonine protein kinase  32.76 
 
 
147 aa  53.9  0.0000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4100  putative anti-sigma regulatory factor, serine/threonine protein kinase  29.91 
 
 
154 aa  53.1  0.000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.39959  normal  0.110814 
 
 
-
 
NC_009051  Memar_2469  putative anti-sigma regulatory factor, serine/threonine protein kinase  31.48 
 
 
135 aa  52.8  0.000002  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_010814  Glov_0750  putative anti-sigma regulatory factor, serine/threonine protein kinase  34.02 
 
 
141 aa  52.8  0.000002  Geobacter lovleyi SZ  Bacteria  normal  0.194451  n/a   
 
 
-
 
NC_009523  RoseRS_2161  anti-sigma-factor antagonist  29.91 
 
 
250 aa  52.8  0.000002  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_0209  putative anti-sigma regulatory factor, serine/threonine protein kinase  31.37 
 
 
186 aa  51.6  0.000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_2139  serine-protein kinase RsbW  33.33 
 
 
159 aa  52  0.000003  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_2102  serine-protein kinase RsbW  33.33 
 
 
159 aa  52  0.000003  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.178488  n/a   
 
 
-
 
NC_009972  Haur_0731  putative anti-sigma regulatory factor, serine/threonine protein kinase  32.11 
 
 
139 aa  51.6  0.000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.993652  n/a   
 
 
-
 
NC_008148  Rxyl_2664  putative anti-sigma regulatory factor, serine/threonine protein kinase  30.93 
 
 
139 aa  52  0.000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0663  putative anti-sigma regulatory factor (Ser/Thr protein kinase)  30.19 
 
 
142 aa  51.2  0.000004  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00575622  normal  0.0631773 
 
 
-
 
NC_011831  Cagg_2065  putative anti-sigma regulatory factor, serine/threonine protein kinase  28.93 
 
 
143 aa  51.2  0.000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_1839  putative anti-sigma regulatory factor, serine/threonine protein kinase  29.29 
 
 
140 aa  51.2  0.000005  Chlorobium limicola DSM 245  Bacteria  normal  0.481374  n/a   
 
 
-
 
NC_013757  Gobs_3675  putative anti-sigma regulatory factor, serine/threonine protein kinase  34.4 
 
 
143 aa  51.2  0.000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.709341  n/a   
 
 
-
 
NC_009767  Rcas_1195  anti-sigma-factor antagonist  30.19 
 
 
269 aa  51.2  0.000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.123525  normal 
 
 
-
 
NC_008609  Ppro_1525  putative anti-sigma regulatory factor, serine/threonine protein kinase  33.01 
 
 
141 aa  50.4  0.000007  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3929  putative anti-sigma regulatory factor, serine/threonine protein kinase  29.46 
 
 
176 aa  50.1  0.000009  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0862817  hitchhiker  0.00846982 
 
 
-
 
NC_009767  Rcas_4099  putative anti-sigma regulatory factor, serine/threonine protein kinase  26.61 
 
 
147 aa  48.9  0.00002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.256347  normal  0.1124 
 
 
-
 
NC_009767  Rcas_1118  putative anti-sigma regulatory factor, serine/threonine protein kinase  34.07 
 
 
146 aa  48.1  0.00004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.227108  normal 
 
 
-
 
NC_009901  Spea_0299  putative anti-sigma regulatory factor, serine/threonine protein kinase  31.78 
 
 
147 aa  48.1  0.00004  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0194  putative anti-sigma regulatory factor, serine/threonine protein kinase  25 
 
 
136 aa  48.1  0.00004  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0773  putative anti-sigma regulatory factor, serine/threonine protein kinase  31.45 
 
 
140 aa  47.4  0.00006  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP1678  serine-protein kinase RsbW  30 
 
 
159 aa  47.4  0.00007  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II0326  hypothetical protein  27.08 
 
 
146 aa  47  0.00008  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0196  putative anti-sigma regulatory factor, serine/threonine protein kinase  25.53 
 
 
136 aa  47  0.00009  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4441  protein serine phosphatase with GAF(s) sensor(s)  26.8 
 
 
792 aa  46.6  0.0001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.794262  normal 
 
 
-
 
NC_014248  Aazo_2838  putative anti-sigma regulatory factor serine/threonine protein kinase  30.11 
 
 
147 aa  46.2  0.0001  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2188  putative anti-sigma regulatory factor, serine/threonine protein kinase  26.42 
 
 
142 aa  47  0.0001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_1794  putative anti-sigma regulatory factor, serine/threonine protein kinase  28.44 
 
 
134 aa  46.6  0.0001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1826  putative anti-sigma regulatory factor, serine/threonine protein kinase  30.84 
 
 
147 aa  46.6  0.0001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_4212  putative anti-sigma regulatory factor, serine/threonine protein kinase  28.7 
 
 
144 aa  46.6  0.0001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.797188  normal  0.229717 
 
 
-
 
NC_009972  Haur_4167  cyclic nucleotide-binding protein  32.22 
 
 
570 aa  46.6  0.0001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_4415  putative serine/threonine kinase anti-sigma factor  31.82 
 
 
175 aa  46.2  0.0002  Frankia sp. CcI3  Bacteria  decreased coverage  0.00721125  normal 
 
 
-
 
NC_013501  Rmar_2331  putative anti-sigma regulatory factor, serine/threonine protein kinase  25.93 
 
 
151 aa  45.4  0.0002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.571842  n/a   
 
 
-
 
NC_008312  Tery_4818  putative anti-sigma regulatory factor, serine/threonine protein kinase  27.47 
 
 
140 aa  45.8  0.0002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0030  putative anti-sigma regulatory factor, serine/threonine protein kinase  27.52 
 
 
144 aa  45.1  0.0003  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.786698 
 
 
-
 
NC_011831  Cagg_2419  cyclic nucleotide-binding protein  25.49 
 
 
563 aa  45.4  0.0003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.871595  normal 
 
 
-
 
NC_008554  Sfum_4032  putative anti-sigma regulatory factor, serine/threonine protein kinase  23.33 
 
 
155 aa  45.1  0.0003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_3500  anti-sigma regulatory factor  25.64 
 
 
133 aa  44.7  0.0004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.314034  normal 
 
 
-
 
NC_013205  Aaci_1745  anti-sigma regulatory factor, serine/threonine protein kinase  26.88 
 
 
153 aa  44.7  0.0004  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2650  putative anti-sigma regulatory factor, serine/threonine protein kinase  29.29 
 
 
141 aa  44.3  0.0006  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_5013  putative anti-sigma regulatory factor, serine/threonine protein kinase  26.8 
 
 
141 aa  44.3  0.0006  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1584  putative anti-sigma regulatory factor, serine/threonine protein kinase  29.29 
 
 
141 aa  44.3  0.0006  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008942  Mlab_1452  hypothetical protein  29.46 
 
 
777 aa  44.3  0.0006  Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_002620  TC0837  RsbW protein, putative  27.52 
 
 
152 aa  43.5  0.0008  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1104  anti-sigma F factor  21.9 
 
 
148 aa  43.5  0.0009  Desulfotomaculum reducens MI-1  Bacteria  normal  0.860331  n/a   
 
 
-
 
NC_013739  Cwoe_4563  putative anti-sigma regulatory factor, serine/threonine protein kinase  29.23 
 
 
286 aa  43.1  0.001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1516  putative anti-sigma regulatory factor, serine/threonine protein kinase  27.43 
 
 
131 aa  43.1  0.001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.124385  n/a   
 
 
-
 
NC_009712  Mboo_1022  putative anti-sigma regulatory factor, serine/threonine protein kinase  28.43 
 
 
116 aa  43.5  0.001  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.126342  normal 
 
 
-
 
NC_009616  Tmel_1313  putative anti-sigma regulatory factor, serine/threonine protein kinase  26.95 
 
 
135 aa  43.5  0.001  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1522  putative anti-sigma regulatory factor, serine/threonine protein kinase  23.66 
 
 
147 aa  42.7  0.002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1014  putative anti-sigma regulatory factor, serine/threonine protein kinase  26.17 
 
 
147 aa  42.4  0.002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  hitchhiker  0.000121242  n/a   
 
 
-
 
NC_007519  Dde_0721  serine phosphatase  33.05 
 
 
885 aa  42.4  0.002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2317  putative anti-sigma regulatory factor, serine/threonine protein kinase  24.19 
 
 
155 aa  42.4  0.002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.128595  normal  0.13523 
 
 
-
 
NC_009523  RoseRS_3289  putative anti-sigma regulatory factor, serine/threonine protein kinase  27.35 
 
 
147 aa  42.4  0.002  Roseiflexus sp. RS-1  Bacteria  normal  0.0615968  normal 
 
 
-
 
NC_011832  Mpal_1924  putative anti-sigma regulatory factor, serine/threonine protein kinase  30.68 
 
 
492 aa  42.4  0.002  Methanosphaerula palustris E1-9c  Archaea  normal  normal  0.184744 
 
 
-
 
NC_013223  Dret_1393  putative anti-sigma regulatory factor, serine/threonine protein kinase  28.17 
 
 
159 aa  42.4  0.002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.132217  normal  0.754718 
 
 
-
 
NC_009012  Cthe_3187  putative anti-sigma regulatory factor, serine/threonine protein kinase  25.71 
 
 
140 aa  42.4  0.002  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00310168  n/a   
 
 
-
 
NC_008345  Sfri_3706  putative anti-sigma regulatory factor, serine/threonine protein kinase  23.53 
 
 
133 aa  42  0.003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0345536  n/a   
 
 
-
 
NC_009483  Gura_2043  putative anti-sigma regulatory factor, serine/threonine protein kinase  24.63 
 
 
141 aa  41.6  0.003  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000388253  n/a   
 
 
-
 
NC_013216  Dtox_2065  anti-sigma regulatory factor, serine/threonine protein kinase  31.48 
 
 
146 aa  41.6  0.004  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000202652  normal 
 
 
-
 
NC_011769  DvMF_2441  putative anti-sigma regulatory factor, serine/threonine protein kinase  30.63 
 
 
138 aa  41.6  0.004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009511  Swit_1493  putative anti-sigma regulatory factor, serine/threonine protein kinase  28.3 
 
 
132 aa  41.2  0.005  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6671  putative anti-sigma regulatory factor, serine/threonine protein kinase  26.09 
 
 
357 aa  40.8  0.007  Frankia sp. EAN1pec  Bacteria  normal  0.314942  normal 
 
 
-
 
NC_002939  GSU1426  rsbW protein, putative  24.75 
 
 
149 aa  40.4  0.009  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
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