8 homologs were found in PanDaTox collection
for query gene TM1040_0047 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_0047  outer membrane porin  100 
 
 
314 aa  615  1e-175  Ruegeria sp. TM1040  Bacteria  normal  normal  0.310717 
 
 
-
 
NC_008686  Pden_2763  outer membrane porin  31.05 
 
 
373 aa  92.4  8e-18  Paracoccus denitrificans PD1222  Bacteria  normal  0.193204  normal 
 
 
-
 
NC_009952  Dshi_0043  porin  29.64 
 
 
319 aa  74.7  0.000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.000000258159 
 
 
-
 
NC_009049  Rsph17029_2500  putative porin  38.64 
 
 
329 aa  50.8  0.00003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.245188  normal  0.576024 
 
 
-
 
NC_007802  Jann_0413  hypothetical protein  26.14 
 
 
336 aa  49.7  0.00007  Jannaschia sp. CCS1  Bacteria  normal  0.343551  normal 
 
 
-
 
NC_009428  Rsph17025_3133  hypothetical protein  35.56 
 
 
332 aa  49.3  0.00008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.38962  hitchhiker  0.0000675489 
 
 
-
 
NC_007493  RSP_0842  putative porin  35.96 
 
 
330 aa  47.4  0.0003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.36378  n/a   
 
 
-
 
NC_008687  Pden_3279  hypothetical protein  27.66 
 
 
313 aa  45.8  0.001  Paracoccus denitrificans PD1222  Bacteria  normal  0.0258265  hitchhiker  0.00601034 
 
 
-
 
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