More than 300 homologs were found in PanDaTox collection
for query gene Swoo_2099 on replicon NC_010506
Organism: Shewanella woodyi ATCC 51908



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010506  Swoo_2099  LysR family transcriptional regulator  100 
 
 
324 aa  665    Shewanella woodyi ATCC 51908  Bacteria  decreased coverage  0.000451168  normal  0.223668 
 
 
-
 
NC_009720  Xaut_4699  LysR family transcriptional regulator  39.81 
 
 
320 aa  220  3e-56  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0559  LysR family transcriptional regulator  34.19 
 
 
352 aa  191  2e-47  Burkholderia xenovorans LB400  Bacteria  normal  0.0351204  normal  0.326115 
 
 
-
 
NC_010511  M446_0119  LysR family transcriptional regulator  35.85 
 
 
334 aa  179  5.999999999999999e-44  Methylobacterium sp. 4-46  Bacteria  normal  0.625019  normal 
 
 
-
 
NC_013421  Pecwa_0481  transcriptional regulator, LysR family  35.5 
 
 
331 aa  177  2e-43  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0399  transcriptional regulator, LysR family  35.18 
 
 
331 aa  177  2e-43  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0160  LysR family transcriptional regulator  34.7 
 
 
343 aa  168  9e-41  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010627  Bphy_7793  LysR family transcriptional regulator  31.11 
 
 
328 aa  164  3e-39  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR1951  LysR family transcriptional regulator  30.38 
 
 
327 aa  159  5e-38  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_1146  LysR family transcriptional regulator  32.21 
 
 
329 aa  149  5e-35  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.720199 
 
 
-
 
NC_009952  Dshi_2229  putative transcriptional regulator  31.85 
 
 
314 aa  140  3e-32  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4684  LysR family transcriptional regulator  30.7 
 
 
353 aa  136  6.0000000000000005e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2906  LysR family transcriptional regulator  31.07 
 
 
333 aa  129  6e-29  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0113134 
 
 
-
 
NC_007802  Jann_3698  LysR family transcriptional regulator  30.16 
 
 
320 aa  123  4e-27  Jannaschia sp. CCS1  Bacteria  normal  normal  0.799138 
 
 
-
 
NC_008044  TM1040_0676  LysR family transcriptional regulator  28.13 
 
 
321 aa  114  3e-24  Ruegeria sp. TM1040  Bacteria  normal  normal  0.0955164 
 
 
-
 
NC_007948  Bpro_3812  LysR family transcriptional regulator  27.99 
 
 
321 aa  94.4  2e-18  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2713  regulatory protein, LysR:LysR, substrate-binding  27.95 
 
 
299 aa  83.6  0.000000000000004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.565858  normal  0.203644 
 
 
-
 
NC_007974  Rmet_4905  putative LysR family transcriptional regulator  28.42 
 
 
301 aa  83.2  0.000000000000006  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00441942  hitchhiker  0.00167298 
 
 
-
 
NC_011892  Mnod_8676  transcriptional regulator, LysR family  29.72 
 
 
303 aa  82.8  0.000000000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.241599  n/a   
 
 
-
 
NC_011892  Mnod_8674  transcriptional regulator, LysR family  27.98 
 
 
306 aa  82  0.00000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.441291  n/a   
 
 
-
 
NC_011899  Hore_05450  transcriptional regulator, LysR family  23.32 
 
 
296 aa  81.6  0.00000000000002  Halothermothrix orenii H 168  Bacteria  normal  0.0434511  n/a   
 
 
-
 
NC_009439  Pmen_2014  LysR family transcriptional regulator  29.26 
 
 
289 aa  80.9  0.00000000000003  Pseudomonas mendocina ymp  Bacteria  normal  0.0382671  normal  0.0477069 
 
 
-
 
NC_009959  Dshi_4198  LysR family transcriptional regulator  26.15 
 
 
303 aa  80.9  0.00000000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.982202 
 
 
-
 
NC_011365  Gdia_2277  transcriptional regulator, LysR family  27.17 
 
 
301 aa  80.1  0.00000000000004  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_5027  transcriptional regulator, LysR family  26.46 
 
 
288 aa  79.7  0.00000000000005  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3415  LysR family transcriptional regulator  26.4 
 
 
386 aa  78.6  0.0000000000001  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6172  transcriptional regulator, LysR family  26.21 
 
 
290 aa  79  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.442907  normal  0.0562293 
 
 
-
 
NC_003295  RSc1094  transcriptional regulatory DNA-binding transcription regulator protein  27.6 
 
 
311 aa  77.8  0.0000000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.827537 
 
 
-
 
NC_007492  Pfl01_3285  LysR family transcriptional regulator  28.79 
 
 
301 aa  77.4  0.0000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.840822 
 
 
-
 
NC_007948  Bpro_1448  LysR family transcriptional regulator  26.73 
 
 
300 aa  77.4  0.0000000000003  Polaromonas sp. JS666  Bacteria  normal  0.0273001  normal  0.589236 
 
 
-
 
NC_008699  Noca_0834  LysR, substrate-binding  26.32 
 
 
330 aa  77  0.0000000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_3964  transcriptional regulator, LysR family  29.32 
 
 
290 aa  77  0.0000000000004  Ralstonia pickettii 12D  Bacteria  decreased coverage  0.00150668  normal  0.033592 
 
 
-
 
NC_012792  Vapar_5611  transcriptional regulator, LysR family  24.82 
 
 
300 aa  77  0.0000000000004  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_3850  transcriptional regulator, LysR family  29.32 
 
 
290 aa  77  0.0000000000004  Ralstonia pickettii 12J  Bacteria  normal  0.0588074  normal 
 
 
-
 
NC_010623  Bphy_3202  LysR family transcriptional regulator  26.81 
 
 
333 aa  77  0.0000000000004  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1775  LysR family transcriptional regulator  25.81 
 
 
296 aa  76.6  0.0000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.310759  normal  0.553993 
 
 
-
 
NC_004578  PSPTO_2909  transcriptional regulator, LysR family  27.17 
 
 
299 aa  76.3  0.0000000000006  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0304015  n/a   
 
 
-
 
NC_010498  EcSMS35_2563  LysR family transcriptional regulator  27.22 
 
 
308 aa  76.3  0.0000000000007  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.00385912  normal 
 
 
-
 
NC_007973  Rmet_2284  LysR family transcriptional regulator  29.37 
 
 
305 aa  76.3  0.0000000000007  Cupriavidus metallidurans CH34  Bacteria  normal  0.471609  hitchhiker  0.00164938 
 
 
-
 
NC_012792  Vapar_6263  transcriptional regulator, LysR family  25.52 
 
 
304 aa  76.3  0.0000000000007  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3114  transcriptional regulator, LysR family  27.45 
 
 
304 aa  76.3  0.0000000000008  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007333  Tfu_1422  LysR family transcriptional regulator  23.88 
 
 
308 aa  75.5  0.000000000001  Thermobifida fusca YX  Bacteria  decreased coverage  0.00195938  n/a   
 
 
-
 
NC_007952  Bxe_B1899  LysR family transcriptional regulator  26.13 
 
 
286 aa  75.9  0.000000000001  Burkholderia xenovorans LB400  Bacteria  normal  0.690335  normal 
 
 
-
 
NC_007347  Reut_A0586  regulatory protein, LysR:LysR, substrate-binding  28.62 
 
 
304 aa  74.7  0.000000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_1265  LysR family transcriptional regulator  26.57 
 
 
294 aa  74.7  0.000000000002  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4318  LysR family transcriptional regulator  28.16 
 
 
302 aa  74.7  0.000000000002  Polaromonas sp. JS666  Bacteria  normal  0.772143  normal 
 
 
-
 
NC_008781  Pnap_3816  LysR family transcriptional regulator  27.42 
 
 
310 aa  74.7  0.000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.898253 
 
 
-
 
NC_011353  ECH74115_3638  transcriptional regulator, LysR family  28.19 
 
 
308 aa  74.7  0.000000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000000159787  normal 
 
 
-
 
CP001509  ECD_02308  predicted DNA-binding transcriptional regulator  28.19 
 
 
308 aa  73.9  0.000000000003  Escherichia coli BL21(DE3)  Bacteria  unclonable  0.000000841101  n/a   
 
 
-
 
CP001637  EcDH1_1253  transcriptional regulator, LysR family  28.19 
 
 
308 aa  73.9  0.000000000003  Escherichia coli DH1  Bacteria  hitchhiker  0.0013481  n/a   
 
 
-
 
NC_009720  Xaut_0266  LysR family transcriptional regulator  27.86 
 
 
313 aa  73.9  0.000000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  0.275341  normal  0.0743516 
 
 
-
 
NC_010468  EcolC_1270  LysR family transcriptional regulator  28.19 
 
 
308 aa  73.9  0.000000000003  Escherichia coli ATCC 8739  Bacteria  unclonable  0.00000010142  hitchhiker  0.000508597 
 
 
-
 
NC_008786  Veis_2508  LysR family transcriptional regulator  22.3 
 
 
295 aa  74.3  0.000000000003  Verminephrobacter eiseniae EF01-2  Bacteria  decreased coverage  0.000736174  normal 
 
 
-
 
NC_009800  EcHS_A2543  LysR family transcriptional regulator  28.19 
 
 
308 aa  73.9  0.000000000003  Escherichia coli HS  Bacteria  hitchhiker  0.000000000000981621  n/a   
 
 
-
 
NC_012892  B21_02269  hypothetical protein  28.19 
 
 
308 aa  73.9  0.000000000003  Escherichia coli BL21  Bacteria  unclonable  0.000000658143  n/a   
 
 
-
 
NC_010658  SbBS512_E2773  transcriptional regulator, LysR family  28.19 
 
 
308 aa  73.9  0.000000000003  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00000000000207011  n/a   
 
 
-
 
NC_009801  EcE24377A_2694  LysR family transcriptional regulator  28.19 
 
 
308 aa  73.9  0.000000000003  Escherichia coli E24377A  Bacteria  unclonable  0.00000000000201069  n/a   
 
 
-
 
NC_007952  Bxe_B2312  LysR family transcriptional regulator  27.49 
 
 
302 aa  74.3  0.000000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.015479  normal 
 
 
-
 
NC_009720  Xaut_2659  LysR family transcriptional regulator  27.86 
 
 
313 aa  73.9  0.000000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  0.112809  normal  0.412166 
 
 
-
 
NC_012918  GM21_0288  transcriptional regulator, LysR family  25.41 
 
 
293 aa  73.6  0.000000000004  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009428  Rsph17025_2061  LysR family transcriptional regulator  26.83 
 
 
289 aa  73.6  0.000000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.255505  normal  0.159895 
 
 
-
 
NC_009654  Mmwyl1_3056  LysR family transcriptional regulator  26.76 
 
 
293 aa  73.9  0.000000000004  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.20426 
 
 
-
 
NC_007908  Rfer_0341  LysR family transcriptional regulator  28.28 
 
 
313 aa  73.2  0.000000000005  Rhodoferax ferrireducens T118  Bacteria  normal  0.398089  n/a   
 
 
-
 
NC_009832  Spro_4256  DNA-binding transcriptional activator XapR  30.2 
 
 
290 aa  73.2  0.000000000005  Serratia proteamaculans 568  Bacteria  normal  hitchhiker  0.00318562 
 
 
-
 
NC_013595  Sros_9290  LysR family transcriptional regulator  28.19 
 
 
311 aa  73.2  0.000000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.422414 
 
 
-
 
NC_008781  Pnap_2034  LysR family transcriptional regulator  24.91 
 
 
303 aa  72.8  0.000000000008  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.376919  normal 
 
 
-
 
NC_014210  Ndas_0582  transcriptional regulator, LysR family  27.24 
 
 
312 aa  72.8  0.000000000008  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_1454  LysR family transcriptional regulator  24.17 
 
 
294 aa  72.4  0.000000000009  Clostridium perfringens SM101  Bacteria  normal  0.0215589  n/a   
 
 
-
 
NC_011894  Mnod_6838  transcriptional regulator, LysR family  27.93 
 
 
294 aa  72.4  0.00000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1801  regulatory protein LysR  24.9 
 
 
301 aa  72  0.00000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.0384326  normal  0.0215354 
 
 
-
 
NC_009485  BBta_6486  LysR family transcriptional regulator  26.32 
 
 
301 aa  72  0.00000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.898531  normal 
 
 
-
 
NC_011146  Gbem_0307  transcriptional regulator, LysR family  24.59 
 
 
293 aa  72  0.00000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.0158849  n/a   
 
 
-
 
NC_012917  PC1_0817  transcriptional regulator, LysR family  28.72 
 
 
297 aa  72.4  0.00000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5354  LysR family transcriptional regulator  29.69 
 
 
334 aa  72.4  0.00000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_2567  LysR family transcriptional regulator  25.78 
 
 
338 aa  72  0.00000000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.259086  normal  0.599662 
 
 
-
 
NC_008061  Bcen_3012  LysR family transcriptional regulator  29.69 
 
 
334 aa  72  0.00000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0225148  n/a   
 
 
-
 
NC_010515  Bcenmc03_4916  LysR family transcriptional regulator  29.69 
 
 
334 aa  72.4  0.00000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_1726  LysR family transcriptional regulator  24.17 
 
 
294 aa  72.4  0.00000000001  Clostridium perfringens ATCC 13124  Bacteria  decreased coverage  0.000000302117  n/a   
 
 
-
 
NC_009720  Xaut_1061  LysR family transcriptional regulator  30.32 
 
 
301 aa  71.6  0.00000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5846  LysR family transcriptional regulator  27.92 
 
 
324 aa  71.2  0.00000000002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0715  LysR family transcriptional regulator  28.42 
 
 
293 aa  71.2  0.00000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0261  putative DNA-binding transcriptional regulator  30.13 
 
 
311 aa  71.6  0.00000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1473  regulatory protein, LysR:LysR, substrate-binding  24.9 
 
 
301 aa  71.6  0.00000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.866328  n/a   
 
 
-
 
NC_007510  Bcep18194_A4037  LysR family transcriptional regulator  30.59 
 
 
309 aa  71.2  0.00000000002  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A1802  regulatory protein LysR:LysR, substrate-binding  24.9 
 
 
301 aa  71.6  0.00000000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.450792 
 
 
-
 
NC_011083  SeHA_C1863  regulatory protein LysR  24.9 
 
 
301 aa  71.6  0.00000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.508971  normal 
 
 
-
 
NC_012880  Dd703_1413  transcriptional regulator, LysR family  28.99 
 
 
295 aa  71.6  0.00000000002  Dickeya dadantii Ech703  Bacteria  normal  0.258464  n/a   
 
 
-
 
NC_008060  Bcen_0456  LysR family transcriptional regulator  30.59 
 
 
306 aa  71.2  0.00000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0647  LysR family transcriptional regulator  28.74 
 
 
314 aa  71.2  0.00000000002  Serratia proteamaculans 568  Bacteria  normal  normal  0.238426 
 
 
-
 
NC_008542  Bcen2424_0935  LysR family transcriptional regulator  30.59 
 
 
306 aa  71.2  0.00000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03103  predicted DNA-binding transcriptional regulator, efflux system  31.41 
 
 
309 aa  70.9  0.00000000003  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3275  putative DNA-binding transcriptional regulator  31.41 
 
 
309 aa  70.9  0.00000000003  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3726  putative DNA-binding transcriptional regulator  31.41 
 
 
309 aa  70.9  0.00000000003  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B4655  LysR family transcriptional regulator  28.91 
 
 
310 aa  70.9  0.00000000003  Ralstonia eutropha JMP134  Bacteria  normal  0.0129573  n/a   
 
 
-
 
NC_007511  Bcep18194_B0293  LysR family transcriptional regulator  29.17 
 
 
334 aa  70.9  0.00000000003  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3287  transcriptional regulator, LysR family  26.14 
 
 
299 aa  70.9  0.00000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.150197  normal  0.141874 
 
 
-
 
NC_009436  Ent638_3680  putative DNA-binding transcriptional regulator  30.41 
 
 
308 aa  70.9  0.00000000003  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_0897  LysR family transcriptional regulator  30.59 
 
 
306 aa  70.9  0.00000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.536186  normal 
 
 
-
 
NC_008463  PA14_40440  LysR family transcriptional regulator  32.93 
 
 
295 aa  70.9  0.00000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_53720  transcriptional regulator  28.23 
 
 
294 aa  70.9  0.00000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0163638  hitchhiker  0.00327626 
 
 
-
 
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