62 homologs were found in PanDaTox collection
for query gene Swoo_1240 on replicon NC_010506
Organism: Shewanella woodyi ATCC 51908



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010506  Swoo_1240  positive regulator of sigma E, RseC/MucC  100 
 
 		 151 aa  311  2.9999999999999996e-84  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.0000139307  hitchhiker  0.0000157643 
 
 
-
 
NC_009831  Ssed_1145  positive regulator of sigma E, RseC/MucC  70.86 
 
 		 151 aa  229  7.000000000000001e-60  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.000000688126  normal  1 
 
 
-
 
NC_009092  Shew_1051  positive regulator of sigma E, RseC/MucC  61.59 
 
 		 158 aa  201  4e-51  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000179706  normal  1 
 
 
-
 
NC_009052  Sbal_1198  positive regulator of sigma E, RseC/MucC  58.94 
 
 		 157 aa  185  2e-46  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000634638  n/a   
 
 
-
 
NC_009665  Shew185_1242  positive regulator of sigma E, RseC/MucC  58.28 
 
 		 157 aa  184  5e-46  Shewanella baltica OS185  Bacteria  hitchhiker  0.000737615  n/a   
 
 
-
 
NC_009997  Sbal195_1275  positive regulator of sigma E, RseC/MucC  58.28 
 
 		 157 aa  184  5e-46  Shewanella baltica OS195  Bacteria  normal  0.0820222  normal  1 
 
 
-
 
NC_011663  Sbal223_3115  positive regulator of sigma E, RseC/MucC  58.28 
 
 		 157 aa  184  5e-46  Shewanella baltica OS223  Bacteria  normal  0.0121324  normal  0.0261972 
 
 
-
 
NC_009901  Spea_1034  positive regulator of sigma E, RseC/MucC  59.6 
 
 		 154 aa  183  7e-46  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00221159  n/a   
 
 
-
 
NC_004347  SO_1345  sigma-E factor regulatory protein RseC  56.29 
 
 		 157 aa  177  5.999999999999999e-44  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007954  Sden_2769  positive regulator of sigma(E), RseC/MucC  52.32 
 
 		 177 aa  169  7.999999999999999e-42  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000517336  n/a   
 
 
-
 
NC_008345  Sfri_2932  positive regulator of sigma E, RseC/MucC  50.33 
 
 		 168 aa  159  1e-38  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00401591  n/a   
 
 
-
 
NC_009438  Sputcn32_1156  positive regulator of sigma E, RseC/MucC  53.38 
 
 		 157 aa  157  3e-38  Shewanella putrefaciens CN-32  Bacteria  normal  0.0373343  n/a   
 
 
-
 
NC_008321  Shewmr4_2851  positive regulator of sigma(E), RseC/MucC  56.95 
 
 		 157 aa  142  2e-33  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00520564  normal  1 
 
 
-
 
NC_008700  Sama_0877  sigma-E factor regulatory protein RseC  49.67 
 
 		 159 aa  131  3e-30  Shewanella amazonensis SB2B  Bacteria  normal  0.475594  normal  0.0507678 
 
 
-
 
NC_008577  Shewana3_3029  positive regulator of sigma(E), RseC/MucC  56.29 
 
 		 157 aa  129  2.0000000000000002e-29  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00208622  normal  0.944765 
 
 
-
 
NC_008322  Shewmr7_2933  positive regulator of sigma(E), RseC/MucC  56.29 
 
 		 157 aa  127  4.0000000000000003e-29  Shewanella sp. MR-7  Bacteria  normal  0.0424162  normal  1 
 
 
-
 
NC_011312  VSAL_I2528  sigma-E factor regulatory protein RseC  36.54 
 
 		 161 aa  86.7  1e-16  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_03001  sigma-E factor regulatory protein RseC  29.66 
 
 		 148 aa  80.5  0.000000000000008  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0118803  n/a   
 
 
-
 
NC_008709  Ping_0068  sigma-E factor regulatory protein RseC  33.58 
 
 		 149 aa  76.6  0.0000000000001  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.00000126596  normal  0.71927 
 
 
-
 
NC_008228  Patl_3152  positive regulator of sigma E, RseC/MucC  24.67 
 
 		 167 aa  74.3  0.0000000000005  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000000405546  n/a   
 
 
-
 
NC_013421  Pecwa_1201  SoxR reducing system protein RseC  32.88 
 
 		 150 aa  68.9  0.00000000002  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.0000162902  n/a   
 
 
-
 
NC_007520  Tcr_0730  positive regulator of sigma(E), RseC/MucC  36.07 
 
 		 167 aa  68.6  0.00000000003  Thiomicrospira crunogena XCL-2  Bacteria  decreased coverage  0.0000000000000950135  n/a   
 
 
-
 
NC_012917  PC1_3074  SoxR reducing system protein RseC  29.45 
 
 		 150 aa  64.3  0.0000000005  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  hitchhiker  0.0025103  n/a   
 
 
-
 
NC_010498  EcSMS35_2723  SoxR reducing system protein RseC  31.54 
 
 		 159 aa  63.9  0.0000000008  Escherichia coli SMS-3-5  Bacteria  normal  0.149775  normal  1 
 
 
-
 
NC_010468  EcolC_1107  SoxR reducing system protein RseC  32.21 
 
 		 159 aa  63.5  0.000000001  Escherichia coli ATCC 8739  Bacteria  normal  0.288168  normal  1 
 
 
-
 
NC_009800  EcHS_A2725  SoxR reducing system protein RseC  32.21 
 
 		 159 aa  63.5  0.000000001  Escherichia coli HS  Bacteria  normal  0.334856  n/a   
 
 
-
 
CP001637  EcDH1_1098  positive regulator of sigma E, RseC/MucC  32.21 
 
 		 159 aa  63.5  0.000000001  Escherichia coli DH1  Bacteria  decreased coverage  0.00219404  n/a   
 
 
-
 
CP001509  ECD_02464  RseC protein involved in reduction of the SoxR iron-sulfur cluster  31.54 
 
 		 159 aa  62.8  0.000000002  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_02428  hypothetical protein  31.54 
 
 		 159 aa  62.8  0.000000002  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_009801  EcE24377A_2856  SoxR reducing system protein RseC  31.54 
 
 		 159 aa  62.8  0.000000002  Escherichia coli E24377A  Bacteria  normal  0.0186933  n/a   
 
 
-
 
NC_011353  ECH74115_3807  SoxR reducing system protein RseC  31.54 
 
 		 159 aa  62.8  0.000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0524065  normal  1 
 
 
-
 
NC_010658  SbBS512_E2935  SoxR reducing system protein RseC  31.54 
 
 		 159 aa  62.8  0.000000002  Shigella boydii CDC 3083-94  Bacteria  normal  0.151183  n/a   
 
 
-
 
NC_013456  VEA_002494  sigma factor RpoE regulatory protein RseC  35.54 
 
 		 156 aa  62  0.000000003  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000000204046  n/a   
 
 
-
 
NC_009783  VIBHAR_03539  positive regulator of sigma E activity  33.88 
 
 		 156 aa  61.6  0.000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009436  Ent638_3057  SoxR reducing system protein RseC  31.97 
 
 		 158 aa  61.2  0.000000004  Enterobacter sp. 638  Bacteria  normal  0.0908162  hitchhiker  0.000179243 
 
 
-
 
NC_011080  SNSL254_A2847  SoxR reducing system protein RseC  30.87 
 
 		 159 aa  60.8  0.000000006  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  0.156123 
 
 
-
 
NC_009654  Mmwyl1_1101  positive regulator of sigma E, RseC/MucC  28.77 
 
 		 155 aa  60.5  0.000000007  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.138854 
 
 
-
 
NC_008309  HS_1608  positive sigma-E factor regulatory protein  34.68 
 
 		 167 aa  60.8  0.000000007  Haemophilus somnus 129PT  Bacteria  normal  0.0389331  n/a   
 
 
-
 
NC_003910  CPS_4126  sigma-E factor regulatory protein RseC  35.42 
 
 		 159 aa  60.5  0.000000008  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_011083  SeHA_C2851  SoxR reducing system protein RseC  30.87 
 
 		 159 aa  60.5  0.000000009  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.74612 
 
 
-
 
NC_011094  SeSA_A2829  SoxR reducing system protein RseC  30.87 
 
 		 159 aa  60.5  0.000000009  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011149  SeAg_B2747  SoxR reducing system protein RseC  30.87 
 
 		 159 aa  60.5  0.000000009  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0281103  n/a   
 
 
-
 
NC_011205  SeD_A2963  SoxR reducing system protein RseC  30.87 
 
 		 159 aa  60.5  0.000000009  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.901953  normal  1 
 
 
-
 
NC_011662  Tmz1t_2318  positive regulator of sigma E, RseC/MucC  26.32 
 
 		 155 aa  59.3  0.00000002  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_010465  YPK_1185  SoxR reducing system protein RseC  29.05 
 
 		 151 aa  58.2  0.00000004  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.101352  n/a   
 
 
-
 
NC_010159  YpAngola_A3607  SoxR reducing system protein RseC  29.05 
 
 		 151 aa  58.2  0.00000004  Yersinia pestis Angola  Bacteria  hitchhiker  0.00898672  normal  1 
 
 
-
 
NC_009708  YpsIP31758_1132  SoxR reducing system protein RseC  29.05 
 
 		 151 aa  58.2  0.00000004  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0219505  n/a   
 
 
-
 
NC_008340  Mlg_1342  positive regulator of sigma E, RseC/MucC  27.4 
 
 		 147 aa  55.8  0.0000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0666262  normal  0.770202 
 
 
-
 
NC_009457  VC0395_A2042  sigma-E factor regulatory protein RseC  34.45 
 
 		 156 aa  55.8  0.0000002  Vibrio cholerae O395  Bacteria  normal  0.436748  n/a   
 
 
-
 
NC_008463  PA14_54400  positive regulator for alginate biosynthesis MucC  30 
 
 		 151 aa  55.1  0.0000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.675062  normal  1 
 
 
-
 
NC_009656  PSPA7_4754  positive regulator for alginate biosynthesis MucC  30.67 
 
 		 151 aa  55.1  0.0000003  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_13720  Positive regulator for alginate biosynthesis MucC  29.33 
 
 		 156 aa  53.9  0.0000007  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009832  Spro_3673  SoxR reducing system protein RseC  23.97 
 
 		 157 aa  52  0.000003  Serratia proteamaculans 568  Bacteria  normal  0.290268  normal  0.795656 
 
 
-
 
NC_013889  TK90_1953  positive regulator of sigma E, RseC/MucC  25.44 
 
 		 151 aa  51.2  0.000004  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.13883  normal  1 
 
 
-
 
NC_007912  Sde_2248  positive regulator for alginate biosynthesis MucC  32.31 
 
 		 156 aa  48.5  0.00003  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00000124681  normal  0.0231164 
 
 
-
 
NC_011899  Hore_13330  positive regulator of sigma E, RseC/MucC  33.01 
 
 		 143 aa  48.1  0.00004  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00188105  n/a   
 
 
-
 
NC_012880  Dd703_2788  SoxR reducing system protein RseC  30.61 
 
 		 155 aa  47.8  0.00005  Dickeya dadantii Ech703  Bacteria  hitchhiker  0.00872544  n/a   
 
 
-
 
NC_008576  Mmc1_1772  positive regulator of sigma(E), RseC/MucC  31.11 
 
 		 159 aa  46.2  0.0001  Magnetococcus sp. MC-1  Bacteria  unclonable  0.0000000000338989  hitchhiker  0.000593819 
 
 
-
 
NC_007484  Noc_2463  positive regulator of sigma(E), RseC/MucC  31.46 
 
 		 146 aa  45.4  0.0002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.939617  n/a   
 
 
-
 
NC_009943  Dole_2512  positive regulator of sigma E, RseC/MucC  26.62 
 
 		 152 aa  42.4  0.002  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_002977  MCA1468  sigma factor regulator MucC  31.18 
 
 		 146 aa  41.6  0.004  Methylococcus capsulatus str. Bath  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_2260  positive regulator of sigma E, RseC/MucC  26.77 
 
 		 149 aa  41.6  0.004  Marinobacter aquaeolei VT8  Bacteria  normal  0.32117  n/a   
 
 
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