10 homologs were found in PanDaTox collection
for query gene Swoo_0279 on replicon NC_010506
Organism: Shewanella woodyi ATCC 51908



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010506  Swoo_0279  TetR family transcriptional regulator  100 
 
 
222 aa  466  1e-130  Shewanella woodyi ATCC 51908  Bacteria  normal  0.350213  unclonable  1.98081e-08 
 
 
-
 
NC_009997  Sbal195_0259  TetR family transcriptional regulator  65.37 
 
 
217 aa  295  4e-79  Shewanella baltica OS195  Bacteria  normal  0.381942  normal 
 
 
-
 
NC_009831  Ssed_0277  TetR family transcriptional regulator  66.83 
 
 
214 aa  292  3e-78  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.000814335  hitchhiker  3.27176e-09 
 
 
-
 
NC_009052  Sbal_0259  TetR family transcriptional regulator  66.99 
 
 
217 aa  290  1e-77  Shewanella baltica OS155  Bacteria  normal  0.0135737  n/a   
 
 
-
 
NC_008321  Shewmr4_2148  TetR family transcriptional regulator  64.56 
 
 
235 aa  283  1e-75  Shewanella sp. MR-4  Bacteria  normal  0.398076  normal  0.369487 
 
 
-
 
NC_008322  Shewmr7_2225  TetR family transcriptional regulator  63.11 
 
 
235 aa  278  4e-74  Shewanella sp. MR-7  Bacteria  normal  0.236275  normal  0.162404 
 
 
-
 
NC_009438  Sputcn32_3531  TetR family transcriptional regulator  60.19 
 
 
235 aa  269  3e-71  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3891  putative transcriptional regulator, TetR family protein  57.55 
 
 
217 aa  267  1e-70  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3935  regulatory protein TetR  57.28 
 
 
215 aa  240  1e-62  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0867734  n/a   
 
 
-
 
NC_013456  VEA_003710  transcriptional regulator  45.1 
 
 
262 aa  44.7  0.001  Vibrio sp. Ex25  Bacteria  normal  0.485423  n/a   
 
 
-
 
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