18 homologs were found in PanDaTox collection
for query gene Swol_1752 on replicon NC_008346
Organism: Syntrophomonas wolfei subsp. wolfei str. Goettingen



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008346  Swol_1752  hypothetical protein  100 
 
 
380 aa  778  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12833  hypothetical protein  30.58 
 
 
375 aa  142  1e-32  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP2457  CRISPR-associated Csm5 family protein  25.96 
 
 
340 aa  124  3e-27  Staphylococcus epidermidis RP62A  Bacteria  normal  0.0486574  n/a   
 
 
-
 
NC_008532  STER_0977  hypothetical protein  29.49 
 
 
357 aa  114  3e-24  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2479  CRISPR-associated RAMP Csm5 family protein  25.53 
 
 
362 aa  65.5  2e-09  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013502  Rmar_2822  CRISPR-associated RAMP protein, Csm5 family  28.48 
 
 
550 aa  61.2  3e-08  Rhodothermus marinus DSM 4252  Bacteria  normal  0.0845679  n/a   
 
 
-
 
NC_013501  Rmar_1633  CRISPR-associated RAMP protein, Csm5 family  25.74 
 
 
485 aa  53.5  6e-06  Rhodothermus marinus DSM 4252  Bacteria  decreased coverage  1.63126e-05  n/a   
 
 
-
 
NC_009718  Fnod_1392  CRISPR-associated RAMP Csm5 family protein  31.62 
 
 
381 aa  51.2  3e-05  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013926  Aboo_1024  CRISPR-associated RAMP protein, Csm5 family  32.14 
 
 
380 aa  49.3  0.0001  Aciduliprofundum boonei T469  Archaea  decreased coverage  3.4991e-07  n/a   
 
 
-
 
NC_011831  Cagg_3447  CRISPR-associated RAMP protein, Csm5 family  24.68 
 
 
471 aa  48.9  0.0001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.186008 
 
 
-
 
NC_008554  Sfum_1345  CRISPR-associated RAMP Csm5 family protein  26.96 
 
 
390 aa  49.3  0.0001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0219  Csm5 family CRISPR-associated RAMP protein  30.77 
 
 
376 aa  47.8  0.0003  Meiothermus ruber DSM 1279  Bacteria  normal  0.684948  normal 
 
 
-
 
NC_012917  PC1_3260  hypothetical protein  27.71 
 
 
562 aa  48.1  0.0003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2700  CRISPR-associated RAMP protein, Csm5 family  31.06 
 
 
390 aa  45.8  0.001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_1256  CRISPR-associated RAMP protein, Csm5 family  23.92 
 
 
380 aa  46.2  0.001  Chlorobium phaeobacteroides BS1  Bacteria  normal  hitchhiker  0.00374145 
 
 
-
 
NC_014212  Mesil_0703  CRISPR-associated RAMP protein, Csm5 family  26.22 
 
 
376 aa  44.7  0.003  Meiothermus silvanus DSM 9946  Bacteria  normal  0.932167  hitchhiker  0.00582507 
 
 
-
 
NC_009943  Dole_0740  CRISPR-associated RAMP Csm5 family protein  29.29 
 
 
391 aa  43.1  0.008  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2051  CRISPR-associated Csm3 family protein  42.62 
 
 
260 aa  43.1  0.008  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
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