38 homologs were found in PanDaTox collection
for query gene Swit_4022 on replicon NC_009511
Organism: Sphingomonas wittichii RW1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009511  Swit_4022  cyclic nucleotide-binding protein  100 
 
 
166 aa  330  6e-90  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0090  cyclic nucleotide-binding protein  37.4 
 
 
177 aa  82  0.000000000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.247588  normal  0.0443693 
 
 
-
 
NC_011884  Cyan7425_1753  cyclic nucleotide-binding protein  31.01 
 
 
357 aa  81.6  0.000000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1134  cyclic nucleotide-binding domain-containing protein  26 
 
 
364 aa  62.8  0.000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.081073 
 
 
-
 
NC_011884  Cyan7425_1592  cyclic nucleotide-binding protein  26.58 
 
 
368 aa  63.2  0.000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.116595 
 
 
-
 
NC_009767  Rcas_2065  cyclic nucleotide-binding protein  31.94 
 
 
462 aa  55.1  0.0000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3745  cyclic nucleotide-binding protein  30.94 
 
 
167 aa  52.8  0.000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0517034  n/a   
 
 
-
 
NC_009523  RoseRS_1786  cyclic nucleotide-binding protein  29.61 
 
 
462 aa  52  0.000003  Roseiflexus sp. RS-1  Bacteria  normal  decreased coverage  0.00355982 
 
 
-
 
NC_009485  BBta_3570  putative glutaminase  32.31 
 
 
620 aa  50.8  0.000009  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.615084 
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  31.11 
 
 
230 aa  49.7  0.00002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3345  cyclic nucleotide-binding protein  26.24 
 
 
417 aa  48.1  0.00005  Haliangium ochraceum DSM 14365  Bacteria  normal  0.254717  normal 
 
 
-
 
NC_011894  Mnod_7320  cyclic nucleotide-binding protein  34.48 
 
 
169 aa  47.8  0.00006  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.376819  n/a   
 
 
-
 
NC_007005  Psyr_1573  cyclic nucleotide-binding  31.58 
 
 
158 aa  47.8  0.00006  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.490025  hitchhiker  0.00990577 
 
 
-
 
NC_013440  Hoch_3831  cyclic nucleotide-binding protein  28 
 
 
435 aa  47.4  0.00008  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0387698 
 
 
-
 
NC_008576  Mmc1_0233  cyclic nucleotide-binding protein  27.27 
 
 
592 aa  46.6  0.0001  Magnetococcus sp. MC-1  Bacteria  unclonable  0.0000000891781  normal 
 
 
-
 
NC_009485  BBta_0079  hypothetical protein  37.93 
 
 
169 aa  46.6  0.0002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.26747 
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  27.46 
 
 
228 aa  45.8  0.0003  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0003  putative cyclic nucleotide binding protein  32.38 
 
 
226 aa  45.1  0.0004  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000897853  n/a   
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  29.63 
 
 
228 aa  45.1  0.0005  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  31.36 
 
 
228 aa  44.7  0.0007  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  30.7 
 
 
226 aa  43.5  0.001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_010623  Bphy_5025  cyclic nucleotide-binding  32.5 
 
 
749 aa  43.5  0.001  Burkholderia phymatum STM815  Bacteria  normal  0.0554599  normal  0.33022 
 
 
-
 
NC_009439  Pmen_3563  cyclic nucleotide-binding protein  28.97 
 
 
312 aa  42.7  0.002  Pseudomonas mendocina ymp  Bacteria  normal  0.187188  normal 
 
 
-
 
NC_004578  PSPTO_3912  cyclic nucleotide-binding protein  29.06 
 
 
144 aa  43.1  0.002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.262178  n/a   
 
 
-
 
NC_013517  Sterm_1785  putative transcriptional regulator, Crp/Fnr family  21.8 
 
 
209 aa  42.4  0.003  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_011758  Mchl_5650  cyclic nucleotide-binding  30.25 
 
 
300 aa  42.4  0.003  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1668  cyclic nucleotide-binding protein  28.68 
 
 
209 aa  42.7  0.003  Methylobacterium sp. 4-46  Bacteria  normal  0.796246  normal  0.637535 
 
 
-
 
NC_007604  Synpcc7942_1814  cyclic nucleotide-binding domain-containing protein  27.83 
 
 
242 aa  42.4  0.003  Synechococcus elongatus PCC 7942  Bacteria  normal  0.38579  normal  0.245711 
 
 
-
 
NC_010510  Mrad2831_6138  cyclic nucleotide-binding  39.71 
 
 
303 aa  42  0.004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1049  cyclic nucleotide-binding protein  27.2 
 
 
210 aa  42  0.004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.085615  n/a   
 
 
-
 
NC_010511  M446_0046  CBS domain-containing protein  34.58 
 
 
605 aa  41.6  0.005  Methylobacterium sp. 4-46  Bacteria  normal  0.689982  normal  0.0185592 
 
 
-
 
NC_011830  Dhaf_2221  transcriptional regulator, Crp/Fnr family  33.71 
 
 
240 aa  41.6  0.005  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.181319  n/a   
 
 
-
 
NC_007948  Bpro_0718  cyclic nucleotide-binding  25.78 
 
 
747 aa  41.6  0.005  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00567448  normal 
 
 
-
 
NC_013037  Dfer_0368  histidine kinase  23.7 
 
 
466 aa  41.6  0.005  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.99767  normal  0.158582 
 
 
-
 
NC_009621  Smed_5695  cyclic nucleotide-binding protein  31.37 
 
 
233 aa  41.6  0.006  Sinorhizobium medicae WSM419  Bacteria  normal  0.0746044  normal 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  30.7 
 
 
226 aa  41.6  0.006  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  27.5 
 
 
252 aa  41.2  0.007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_007925  RPC_3364  cyclic nucleotide-binding domain-containing protein  29.36 
 
 
772 aa  40.8  0.01  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.419031 
 
 
-
 
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