More than 300 homologs were found in PanDaTox collection
for query gene Svir_28900 on replicon NC_013159
Organism: Saccharomonospora viridis DSM 43017



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013159  Svir_28900  cell envelope-related function transcriptional attenuator common domain protein  100 
 
 
522 aa  1056    Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.385343 
 
 
-
 
NC_013093  Amir_1037  cell envelope-related transcriptional attenuator  53.95 
 
 
732 aa  435  1e-120  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6348  cell envelope-related transcriptional attenuator  44.6 
 
 
517 aa  384  1e-105  Actinosynnema mirum DSM 43827  Bacteria  normal  0.352796  n/a   
 
 
-
 
NC_013159  Svir_06080  cell envelope-related function transcriptional attenuator common domain protein  40.49 
 
 
538 aa  371  1e-101  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.832186  normal  0.188153 
 
 
-
 
NC_014158  Tpau_1061  cell envelope-related transcriptional attenuator  43.25 
 
 
567 aa  358  9.999999999999999e-98  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1354  cell envelope-related transcriptional attenuator  42.89 
 
 
490 aa  330  4e-89  Mycobacterium sp. JLS  Bacteria  normal  0.0429862  normal  0.395159 
 
 
-
 
NC_008146  Mmcs_1318  cell envelope-related transcriptional attenuator  42.89 
 
 
490 aa  329  6e-89  Mycobacterium sp. MCS  Bacteria  normal  0.940107  n/a   
 
 
-
 
NC_008705  Mkms_1335  cell envelope-related transcriptional attenuator  42.89 
 
 
490 aa  329  6e-89  Mycobacterium sp. KMS  Bacteria  normal  0.962054  normal  0.634397 
 
 
-
 
NC_009565  TBFG_13296  CPSA-related protein  42.66 
 
 
497 aa  328  1.0000000000000001e-88  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000000000747689  normal 
 
 
-
 
NC_008726  Mvan_1726  cell envelope-related transcriptional attenuator  43.96 
 
 
493 aa  326  6e-88  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_1852  cell envelope-related function transcriptional attenuator, LytR/CpsA family  42.54 
 
 
676 aa  325  1e-87  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4737  cell envelope-related transcriptional attenuator  42.37 
 
 
493 aa  323  5e-87  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.440107  normal 
 
 
-
 
NC_009565  TBFG_13519  hypothetical protein  38.74 
 
 
512 aa  307  4.0000000000000004e-82  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.100718 
 
 
-
 
NC_013235  Namu_4212  cell envelope-related transcriptional attenuator  38.95 
 
 
496 aa  301  2e-80  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.134321 
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  40.74 
 
 
521 aa  293  4e-78  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_013093  Amir_6349  cell envelope-related transcriptional attenuator  47.32 
 
 
410 aa  292  1e-77  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1296  cell envelope-related transcriptional attenuator  41.48 
 
 
414 aa  287  2.9999999999999996e-76  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_06070  cell envelope-related function transcriptional attenuator common domain protein  44.88 
 
 
514 aa  275  2.0000000000000002e-72  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.974325  normal  0.0563121 
 
 
-
 
NC_013131  Caci_1912  cell envelope-related transcriptional attenuator  39.55 
 
 
664 aa  251  2e-65  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7119  cell envelope-related transcriptional attenuator  44.98 
 
 
382 aa  238  3e-61  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8771  cell envelope-related transcriptional attenuator  32.99 
 
 
547 aa  237  3e-61  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.359858 
 
 
-
 
NC_013093  Amir_1299  cell envelope-related transcriptional attenuator  39.05 
 
 
340 aa  198  2.0000000000000003e-49  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  28.94 
 
 
497 aa  190  7e-47  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  30.67 
 
 
505 aa  188  2e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  31.06 
 
 
509 aa  187  5e-46  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  29.74 
 
 
504 aa  176  9e-43  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  36.9 
 
 
390 aa  172  2e-41  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4096  cell envelope-related transcriptional attenuator  33.14 
 
 
468 aa  168  2e-40  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0412  cell envelope-related transcriptional attenuator  33.25 
 
 
491 aa  168  2e-40  Acidothermus cellulolyticus 11B  Bacteria  normal  0.245301  normal 
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  31.09 
 
 
573 aa  167  2.9999999999999998e-40  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1558  cell envelope-related transcriptional attenuator  31.53 
 
 
545 aa  166  1.0000000000000001e-39  Frankia sp. CcI3  Bacteria  normal  normal  0.931439 
 
 
-
 
NC_009921  Franean1_5902  cell envelope-related transcriptional attenuator  30.36 
 
 
625 aa  165  1.0000000000000001e-39  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1363  Transcriptional regulator-like protein  32.37 
 
 
530 aa  162  1e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  0.640186  normal 
 
 
-
 
NC_009921  Franean1_6827  cell envelope-related transcriptional attenuator  31.5 
 
 
516 aa  155  1e-36  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0728  cell envelope-related transcriptional attenuator  30.79 
 
 
618 aa  155  1e-36  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0188197 
 
 
-
 
NC_009921  Franean1_1307  cell envelope-related transcriptional attenuator  30.31 
 
 
520 aa  152  1e-35  Frankia sp. EAN1pec  Bacteria  normal  0.386656  normal 
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  30.33 
 
 
512 aa  148  2.0000000000000003e-34  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_013510  Tcur_4114  cell envelope-related transcriptional attenuator  31.76 
 
 
549 aa  146  9e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  30.08 
 
 
486 aa  146  1e-33  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_009664  Krad_3901  cell envelope-related transcriptional attenuator  33.33 
 
 
407 aa  146  1e-33  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0120062 
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  32.92 
 
 
414 aa  145  2e-33  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_007777  Francci3_0711  cell envelope-related transcriptional attenuator  30.69 
 
 
526 aa  145  2e-33  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  36.3 
 
 
320 aa  144  4e-33  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0411  cell envelope-related transcriptional attenuator  29.1 
 
 
520 aa  144  6e-33  Acidothermus cellulolyticus 11B  Bacteria  normal  0.118906  normal 
 
 
-
 
NC_009380  Strop_4510  transcription attenuator LytR  33.85 
 
 
420 aa  143  8e-33  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  32.36 
 
 
481 aa  141  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_013169  Ksed_08470  cell envelope-related function transcriptional attenuator common domain protein  34.15 
 
 
394 aa  139  8.999999999999999e-32  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.282031 
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  31.05 
 
 
468 aa  139  8.999999999999999e-32  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2100  cell envelope-related transcriptional attenuator  33.57 
 
 
393 aa  139  1e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_09620  cell envelope-related function transcriptional attenuator common domain protein  35.06 
 
 
353 aa  139  1e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.369888 
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  36.6 
 
 
336 aa  139  1e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  37.4 
 
 
307 aa  138  2e-31  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  28.1 
 
 
478 aa  138  3.0000000000000003e-31  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5205  cell envelope-related transcriptional attenuator  31.03 
 
 
560 aa  136  9e-31  Frankia sp. EAN1pec  Bacteria  normal  0.0714783  normal 
 
 
-
 
NC_008146  Mmcs_5038  cell envelope-related transcriptional attenuator  32.69 
 
 
311 aa  135  9.999999999999999e-31  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5126  cell envelope-related transcriptional attenuator  32.69 
 
 
311 aa  135  9.999999999999999e-31  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5665  cell envelope-related transcriptional attenuator  33.96 
 
 
306 aa  136  9.999999999999999e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.0393509 
 
 
-
 
NC_009077  Mjls_5418  cell envelope-related transcriptional attenuator  32.69 
 
 
311 aa  135  9.999999999999999e-31  Mycobacterium sp. JLS  Bacteria  normal  normal  0.710746 
 
 
-
 
NC_007333  Tfu_2567  cell envelope-related transcriptional attenuator  35.37 
 
 
404 aa  134  3e-30  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  31.41 
 
 
409 aa  134  3e-30  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_013093  Amir_3559  cell envelope-related transcriptional attenuator  36.86 
 
 
352 aa  134  3.9999999999999996e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  0.153801  n/a   
 
 
-
 
NC_014158  Tpau_0136  cell envelope-related transcriptional attenuator  33.22 
 
 
466 aa  134  3.9999999999999996e-30  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0624  cell envelope-related transcriptional attenuator  29.32 
 
 
481 aa  133  7.999999999999999e-30  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  36.64 
 
 
307 aa  130  5.0000000000000004e-29  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_013131  Caci_7619  cell envelope-related transcriptional attenuator  32.06 
 
 
379 aa  130  6e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3959  cell envelope-related transcriptional attenuator  33.55 
 
 
463 aa  130  6e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1965  cell envelope-related transcriptional attenuator  27.95 
 
 
487 aa  129  1.0000000000000001e-28  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000312518 
 
 
-
 
NC_013595  Sros_0120  Transcriptional regulator-like protein  36.47 
 
 
326 aa  129  1.0000000000000001e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  0.224299  normal 
 
 
-
 
NC_008541  Arth_2228  cell envelope-related transcriptional attenuator  25.73 
 
 
521 aa  127  6e-28  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.000756142  n/a   
 
 
-
 
NC_013174  Jden_2257  cell envelope-related transcriptional attenuator  31.7 
 
 
362 aa  125  1e-27  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.518809 
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  27.15 
 
 
506 aa  124  3e-27  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  26.21 
 
 
480 aa  123  7e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_014210  Ndas_4745  cell envelope-related transcriptional attenuator  27.65 
 
 
584 aa  122  9.999999999999999e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_08920  cell envelope-related function transcriptional attenuator common domain protein  31.9 
 
 
381 aa  122  1.9999999999999998e-26  Micrococcus luteus NCTC 2665  Bacteria  normal  0.667016  n/a   
 
 
-
 
NC_008699  Noca_0784  cell envelope-related transcriptional attenuator  29.62 
 
 
400 aa  121  1.9999999999999998e-26  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  30.58 
 
 
349 aa  121  3e-26  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3302  cell envelope-related transcriptional attenuator  29.71 
 
 
406 aa  121  3e-26  Nocardioides sp. JS614  Bacteria  normal  0.0160587  n/a   
 
 
-
 
NC_009565  TBFG_10837  hypothetical protein  27.52 
 
 
684 aa  119  9.999999999999999e-26  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.000372154 
 
 
-
 
NC_008699  Noca_1395  cell envelope-related transcriptional attenuator  34.55 
 
 
404 aa  119  1.9999999999999998e-25  Nocardioides sp. JS614  Bacteria  normal  0.330473  n/a   
 
 
-
 
NC_012669  Bcav_1165  cell envelope-related protein transcriptional attenuator  33.21 
 
 
363 aa  118  1.9999999999999998e-25  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2383  cell envelope-related transcriptional attenuator  30.28 
 
 
389 aa  118  3e-25  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0868762  hitchhiker  0.00772059 
 
 
-
 
NC_013521  Sked_08560  cell envelope-related function transcriptional attenuator common domain protein  33.2 
 
 
434 aa  118  3e-25  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.511519  normal  0.633257 
 
 
-
 
NC_013441  Gbro_3920  cell envelope-related function transcriptional attenuator, LytR/CpsA family  24.59 
 
 
734 aa  117  6e-25  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3228  cell envelope-related transcriptional attenuator  27.67 
 
 
377 aa  116  7.999999999999999e-25  Arthrobacter sp. FB24  Bacteria  normal  0.0471557  n/a   
 
 
-
 
NC_013947  Snas_6386  cell envelope-related transcriptional attenuator  27.36 
 
 
382 aa  116  7.999999999999999e-25  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_5021  cell envelope-related transcriptional attenuator  34.5 
 
 
312 aa  116  8.999999999999998e-25  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00237783 
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  28.53 
 
 
319 aa  116  8.999999999999998e-25  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_013174  Jden_1865  cell envelope-related transcriptional attenuator  32.16 
 
 
434 aa  115  2.0000000000000002e-24  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.0368682 
 
 
-
 
NC_014151  Cfla_2384  cell envelope-related transcriptional attenuator  35.83 
 
 
303 aa  115  2.0000000000000002e-24  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.174416  hitchhiker  0.00797054 
 
 
-
 
NC_013172  Bfae_20880  cell envelope-related function transcriptional attenuator common domain  29.89 
 
 
296 aa  114  4.0000000000000004e-24  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1808  cell envelope-related transcriptional attenuator  34.48 
 
 
424 aa  114  4.0000000000000004e-24  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0292903  n/a   
 
 
-
 
NC_010816  BLD_0762  transcriptional regulator  26.43 
 
 
489 aa  114  6e-24  Bifidobacterium longum DJO10A  Bacteria  normal  0.245721  n/a   
 
 
-
 
NC_009953  Sare_4011  cell envelope-related transcriptional attenuator  32.3 
 
 
380 aa  113  7.000000000000001e-24  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000201414 
 
 
-
 
NC_013721  HMPREF0424_0588  putative transcriptional regulator  26.76 
 
 
432 aa  112  2.0000000000000002e-23  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.952975 
 
 
-
 
NC_013131  Caci_7618  cell envelope-related transcriptional attenuator  26.01 
 
 
643 aa  111  3e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  26.77 
 
 
453 aa  111  3e-23  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_013172  Bfae_30000  cell envelope-related function transcriptional attenuator common domain  28.41 
 
 
395 aa  110  4.0000000000000004e-23  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1166  cell envelope-related protein transcriptional attenuator  29.54 
 
 
395 aa  110  5e-23  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2595  cell envelope-related transcriptional attenuator  33.33 
 
 
313 aa  110  6e-23  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5903  cell envelope-related transcriptional attenuator  30.22 
 
 
508 aa  110  6e-23  Frankia sp. EAN1pec  Bacteria  normal  normal  0.667474 
 
 
-
 
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