More than 300 homologs were found in PanDaTox collection
for query gene Svir_23420 on replicon NC_013159
Organism: Saccharomonospora viridis DSM 43017



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013159  Svir_23420  carbohydrate ABC transporter membrane protein  100 
 
 
310 aa  612  9.999999999999999e-175  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.93855  normal 
 
 
-
 
NC_013172  Bfae_01540  carbohydrate ABC transporter membrane protein  64.93 
 
 
329 aa  370  1e-101  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0089  binding-protein-dependent transport systems inner membrane component  63.43 
 
 
312 aa  359  4e-98  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3250  binding-protein-dependent transport systems inner membrane component  63.76 
 
 
294 aa  350  1e-95  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0540669  normal  0.0518644 
 
 
-
 
NC_009664  Krad_0973  binding-protein-dependent transport systems inner membrane component  59.15 
 
 
305 aa  338  5e-92  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0279283 
 
 
-
 
NC_014165  Tbis_0068  binding-protein-dependent transporter inner membrane component  63.7 
 
 
308 aa  337  9.999999999999999e-92  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1618  binding-protein-dependent transport protein  50.68 
 
 
296 aa  280  3e-74  Thermobifida fusca YX  Bacteria  normal  0.14282  n/a   
 
 
-
 
NC_014210  Ndas_2346  binding-protein-dependent transport systems inner membrane component  53.69 
 
 
340 aa  264  1e-69  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.162139 
 
 
-
 
NC_012034  Athe_0615  binding-protein-dependent transport systems inner membrane component  40.71 
 
 
296 aa  187  2e-46  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2695  binding-protein-dependent transport systems inner membrane component  42.53 
 
 
309 aa  182  5.0000000000000004e-45  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.179346  n/a   
 
 
-
 
NC_008786  Veis_0945  binding-protein-dependent transport systems inner membrane component  42.19 
 
 
309 aa  175  8e-43  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1134  binding-protein-dependent transport systems inner membrane component  34.7 
 
 
300 aa  171  2e-41  Clostridium cellulolyticum H10  Bacteria  normal  0.454536  n/a   
 
 
-
 
NC_011898  Ccel_1026  binding-protein-dependent transport systems inner membrane component  35.61 
 
 
300 aa  164  2.0000000000000002e-39  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0038089  n/a   
 
 
-
 
NC_013739  Cwoe_5440  binding-protein-dependent transport systems inner membrane component  37.1 
 
 
329 aa  155  1e-36  Conexibacter woesei DSM 14684  Bacteria  normal  0.811614  normal 
 
 
-
 
NC_011368  Rleg2_4663  binding-protein-dependent transport systems inner membrane component  34.36 
 
 
299 aa  154  2e-36  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.456499 
 
 
-
 
NC_012848  Rleg_4750  binding-protein-dependent transport systems inner membrane component  33.68 
 
 
299 aa  153  2.9999999999999998e-36  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62916  normal  0.701692 
 
 
-
 
NC_014165  Tbis_3250  binding-protein-dependent transporter inner membrane component  33.92 
 
 
310 aa  148  1.0000000000000001e-34  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_0201  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
294 aa  147  2.0000000000000003e-34  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  34.77 
 
 
315 aa  147  3e-34  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_008541  Arth_3142  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
325 aa  144  2e-33  Arthrobacter sp. FB24  Bacteria  normal  0.406302  n/a   
 
 
-
 
NC_008578  Acel_1361  binding-protein-dependent transport systems inner membrane component  33.98 
 
 
315 aa  143  3e-33  Acidothermus cellulolyticus 11B  Bacteria  normal  0.193472  normal  0.165724 
 
 
-
 
NC_013131  Caci_3588  binding-protein-dependent transport systems inner membrane component  32.3 
 
 
338 aa  142  6e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.786552  normal 
 
 
-
 
NC_010816  BLD_1304  MalF-type ABC sugar transport systems permease component  33.46 
 
 
334 aa  141  9.999999999999999e-33  Bifidobacterium longum DJO10A  Bacteria  decreased coverage  0.00913134  n/a   
 
 
-
 
NC_011886  Achl_3270  binding-protein-dependent transport systems inner membrane component  31.99 
 
 
321 aa  141  9.999999999999999e-33  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013172  Bfae_27710  permease component of ABC-type sugar transporter  33.57 
 
 
294 aa  139  7e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1530  binding-protein-dependent transport systems inner membrane component  31.27 
 
 
295 aa  139  7e-32  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0828  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
316 aa  138  1e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.194369 
 
 
-
 
NC_014151  Cfla_1127  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
328 aa  138  1e-31  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.190953  hitchhiker  0.00155627 
 
 
-
 
NC_012669  Bcav_3676  binding-protein-dependent transport systems inner membrane component  35.37 
 
 
309 aa  137  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_00850  carbohydrate ABC transporter membrane protein  31.48 
 
 
320 aa  137  2e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  30.6 
 
 
320 aa  137  2e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_010816  BLD_1875  MalF-type ABC sugar transport systems permease component  30.6 
 
 
350 aa  137  3.0000000000000003e-31  Bifidobacterium longum DJO10A  Bacteria  normal  0.0432685  n/a   
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
291 aa  137  3.0000000000000003e-31  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_007488  RSP_3942  ABC sugar transporter, inner membrane subunit  32.62 
 
 
321 aa  136  5e-31  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.108149  n/a   
 
 
-
 
NC_013595  Sros_8235  ABC transporter, permease protein  31.8 
 
 
306 aa  136  5e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_13130  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
293 aa  135  6.0000000000000005e-31  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2193  binding-protein-dependent transport systems inner membrane component  34.08 
 
 
306 aa  135  7.000000000000001e-31  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.692762  normal 
 
 
-
 
NC_012669  Bcav_0146  binding-protein-dependent transport systems inner membrane component  33.68 
 
 
292 aa  135  9.999999999999999e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0896196  normal 
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  32.52 
 
 
316 aa  135  9.999999999999999e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  34.83 
 
 
306 aa  134  3e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2718  binding-protein-dependent transport systems inner membrane component  34.6 
 
 
330 aa  133  3e-30  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.21265 
 
 
-
 
NC_013521  Sked_11550  carbohydrate ABC transporter membrane protein  33.71 
 
 
354 aa  132  6e-30  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal  0.0144146 
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  33.55 
 
 
307 aa  132  6e-30  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_010816  BLD_1493  MalF-type ABC sugar transport systems permease component  34.55 
 
 
319 aa  132  6.999999999999999e-30  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_2048  binding-protein-dependent transport systems inner membrane component  35.16 
 
 
332 aa  132  7.999999999999999e-30  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_02940  carbohydrate ABC transporter membrane protein  33.54 
 
 
318 aa  132  1.0000000000000001e-29  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0285  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
327 aa  132  1.0000000000000001e-29  Meiothermus ruber DSM 1279  Bacteria  normal  0.0175684  normal  0.996665 
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  30.12 
 
 
318 aa  131  2.0000000000000002e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_013947  Snas_2734  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
308 aa  131  2.0000000000000002e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.172129  normal  0.124427 
 
 
-
 
NC_013595  Sros_0295  ABC-type sugar transport system periplasmic component-like protein  32.01 
 
 
300 aa  130  3e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_28370  carbohydrate ABC transporter membrane protein  33.45 
 
 
287 aa  130  3e-29  Brachybacterium faecium DSM 4810  Bacteria  normal  0.096742  n/a   
 
 
-
 
NC_013521  Sked_11610  permease component of ABC-type sugar transporter  32.34 
 
 
311 aa  130  3e-29  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.117578  normal  0.102082 
 
 
-
 
NC_013131  Caci_6970  binding-protein-dependent transport systems inner membrane component  30.18 
 
 
305 aa  129  5.0000000000000004e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0388505  normal 
 
 
-
 
NC_012854  Rleg_6533  binding-protein-dependent transport systems inner membrane component  31.36 
 
 
292 aa  129  5.0000000000000004e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.824779  normal  0.0156091 
 
 
-
 
NC_013739  Cwoe_4453  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
319 aa  129  5.0000000000000004e-29  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_04280  binding-protein-dependent transport systems inner membrane component  33.11 
 
 
302 aa  129  6e-29  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6585  lactose transport system (permease)  33.88 
 
 
306 aa  129  6e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_06940  hypothetical protein  31.77 
 
 
329 aa  129  6e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011368  Rleg2_5607  binding-protein-dependent transport systems inner membrane component  31.12 
 
 
292 aa  129  8.000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.153616  normal 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
311 aa  129  9.000000000000001e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_013526  Tter_2658  binding-protein-dependent transport systems inner membrane component  32.59 
 
 
309 aa  129  9.000000000000001e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.43514  n/a   
 
 
-
 
NC_013521  Sked_03080  permease component of ABC-type sugar transporter  32.2 
 
 
322 aa  128  1.0000000000000001e-28  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal 
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  32.01 
 
 
320 aa  128  1.0000000000000001e-28  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1290  binding-protein-dependent transport systems inner membrane component  32.16 
 
 
297 aa  128  1.0000000000000001e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010003  Pmob_0474  binding-protein-dependent transport systems inner membrane component  29.32 
 
 
291 aa  128  1.0000000000000001e-28  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  31.94 
 
 
287 aa  127  2.0000000000000002e-28  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4016  binding-protein-dependent transport systems inner membrane component  30.63 
 
 
302 aa  127  2.0000000000000002e-28  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2978  binding-protein-dependent transport systems inner membrane component  34.54 
 
 
289 aa  127  2.0000000000000002e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_6025  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
305 aa  127  3e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  0.584937  normal 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  33.07 
 
 
306 aa  127  3e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_013411  GYMC61_2715  binding-protein-dependent transport systems inner membrane component  32.77 
 
 
289 aa  127  3e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007908  Rfer_1100  binding-protein-dependent transport systems inner membrane component  34.67 
 
 
311 aa  126  4.0000000000000003e-28  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.0016702  n/a   
 
 
-
 
NC_014151  Cfla_3364  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
321 aa  126  4.0000000000000003e-28  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0969949  hitchhiker  0.00558819 
 
 
-
 
NC_008786  Veis_2012  binding-protein-dependent transport systems inner membrane component  34.14 
 
 
310 aa  126  5e-28  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.395958 
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
318 aa  125  6e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  34.97 
 
 
307 aa  125  8.000000000000001e-28  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_013205  Aaci_0796  binding-protein-dependent transport systems inner membrane component  34.94 
 
 
312 aa  125  8.000000000000001e-28  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.633875  n/a   
 
 
-
 
NC_012669  Bcav_0647  binding-protein-dependent transport systems inner membrane component  32.32 
 
 
325 aa  125  8.000000000000001e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  34.97 
 
 
307 aa  125  8.000000000000001e-28  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_013205  Aaci_0914  binding-protein-dependent transport systems inner membrane component  31.39 
 
 
310 aa  125  8.000000000000001e-28  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_6325  binding-protein-dependent transport systems inner membrane component  30.45 
 
 
305 aa  125  1e-27  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2984  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
305 aa  125  1e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  30.42 
 
 
318 aa  125  1e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_008786  Veis_4548  binding-protein-dependent transport systems inner membrane component  32.16 
 
 
297 aa  124  2e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_3365  binding-protein-dependent transport systems inner membrane component  31.92 
 
 
292 aa  124  2e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  31.49 
 
 
298 aa  124  3e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  31.68 
 
 
317 aa  124  3e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  32.02 
 
 
317 aa  124  3e-27  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009485  BBta_3986  putative ABC transporter (permease protein)  32.13 
 
 
313 aa  124  3e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2895  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
316 aa  124  3e-27  Roseiflexus sp. RS-1  Bacteria  normal  0.0497455  normal 
 
 
-
 
NC_012850  Rleg_1867  binding-protein-dependent transport systems inner membrane component  30.3 
 
 
312 aa  124  3e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A2103  ABC transporter, permease protein  29.56 
 
 
296 aa  124  3e-27  Bacillus cereus AH187  Bacteria  normal  0.512676  n/a   
 
 
-
 
NC_013521  Sked_05430  carbohydrate ABC transporter membrane protein  32.68 
 
 
321 aa  123  4e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0550121  normal 
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  34.46 
 
 
292 aa  123  4e-27  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_009429  Rsph17025_3650  ABC-type sugar transport system periplasmic component-like protein  30.94 
 
 
315 aa  123  4e-27  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.0685768 
 
 
-
 
NC_013131  Caci_7905  binding-protein-dependent transport systems inner membrane component  29.78 
 
 
336 aa  123  4e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  32.83 
 
 
295 aa  123  5e-27  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_4879  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
305 aa  122  6e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.825826  n/a   
 
 
-
 
NC_008543  Bcen2424_3286  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
305 aa  122  6e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1307  binding-protein-dependent transport systems inner membrane component  31.94 
 
 
297 aa  122  6e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
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