30 homologs were found in PanDaTox collection
for query gene Svir_17350 on replicon NC_013159
Organism: Saccharomonospora viridis DSM 43017



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013159  Svir_17350  CRISPR-associated protein, Cse1 family  100 
 
 
567 aa  1142    Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0018  hypothetical protein  45.39 
 
 
550 aa  412  1e-114  Frankia sp. CcI3  Bacteria  normal  0.830051  normal 
 
 
-
 
NC_013124  Afer_0988  CRISPR-associated protein, Cse1 family  33.71 
 
 
540 aa  210  5e-53  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_2680  CRISPR-associated protein, Cse1 family  32.56 
 
 
561 aa  204  2e-51  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00401114  n/a   
 
 
-
 
NC_009953  Sare_2573  CRISPR-associated Cse1 family protein  33.39 
 
 
560 aa  204  3e-51  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00155149 
 
 
-
 
NC_007333  Tfu_1600  CRISPR-associated Cse1 family protein  34.22 
 
 
555 aa  194  5e-48  Thermobifida fusca YX  Bacteria  normal  0.214237  n/a   
 
 
-
 
NC_014165  Tbis_1535  Cse1 family CRISPR-associated protein  32.57 
 
 
568 aa  187  6e-46  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3909  CRISPR-associated protein, Cse1 family  30.18 
 
 
1540 aa  178  2e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0587749  normal  0.0865606 
 
 
-
 
NC_014210  Ndas_1281  CRISPR-associated protein, Cse1 family  32.26 
 
 
573 aa  176  9.999999999999999e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3054  CRISPR-associated protein, Cse1 family  29.9 
 
 
555 aa  162  1e-38  Nakamurella multipartita DSM 44233  Bacteria  normal  0.044999  decreased coverage  0.000092711 
 
 
-
 
NC_013526  Tter_1896  CRISPR-associated protein, Cse1 family  25.61 
 
 
533 aa  116  1.0000000000000001e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.189081  n/a   
 
 
-
 
NC_013946  Mrub_3019  Cse1 family CRISPR-associated protein  30.15 
 
 
516 aa  108  2e-22  Meiothermus ruber DSM 1279  Bacteria  decreased coverage  0.00000306277  normal  0.0835975 
 
 
-
 
NC_014212  Mesil_1230  CRISPR-associated protein, Cse1 family  32.12 
 
 
561 aa  103  7e-21  Meiothermus silvanus DSM 9946  Bacteria  unclonable  0.00000214368  normal  0.502097 
 
 
-
 
NC_008609  Ppro_2342  CRISPR-associated Cse1 family protein  27.19 
 
 
506 aa  102  2e-20  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_1972  CRISPR-associated Cse1 family protein  27.65 
 
 
495 aa  96.7  1e-18  Salinispora arenicola CNS-205  Bacteria  normal  0.355127  normal 
 
 
-
 
NC_007333  Tfu_1592  CRISPR-associated Cse1 family protein  28.16 
 
 
549 aa  92.8  1e-17  Thermobifida fusca YX  Bacteria  normal  0.440854  n/a   
 
 
-
 
NC_011729  PCC7424_2439  CRISPR-associated protein, Cse1 family  25.58 
 
 
525 aa  91.7  3e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_012560  Avin_17180  hypothetical protein  31.12 
 
 
516 aa  87.8  4e-16  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2825  CRISPR-associated Cse1 family protein  26.09 
 
 
517 aa  85.9  0.000000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0760  CRISPR system CASCADE complex protein CasA  25.06 
 
 
556 aa  85.5  0.000000000000003  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.0334414 
 
 
-
 
NC_013159  Svir_17140  CRISPR-associated protein, Cse1 family  28.82 
 
 
525 aa  80.5  0.00000000000008  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008010  Dgeo_2630  CRISPR-associated Cse1 family protein  29.14 
 
 
573 aa  77.8  0.0000000000005  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3760  CRISPR-associated Cse1 family protein  27.58 
 
 
525 aa  71.2  0.00000000004  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.33895 
 
 
-
 
NC_011883  Ddes_0923  CRISPR-associated protein, Cse1 family  27.2 
 
 
540 aa  65.5  0.000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_13870  CRISPR-associated protein, Cse1 family  25.81 
 
 
484 aa  65.1  0.000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.578004  normal  0.601258 
 
 
-
 
NC_009523  RoseRS_0650  CRISPR-associated Cse1 family protein  24.08 
 
 
525 aa  63.9  0.000000007  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_4093  CRISPR-associated protein, Cse1 family  22.11 
 
 
518 aa  57  0.0000009  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0942  CRISPR-associated protein, Cse1 family  27.39 
 
 
722 aa  55.8  0.000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2671  CRISPR-associated protein, Cse1 family  24.36 
 
 
507 aa  55.1  0.000004  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0827  CRISPR-associated Cse1 family protein  27.95 
 
 
545 aa  54.7  0.000005  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
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