More than 300 homologs were found in PanDaTox collection
for query gene Svir_06500 on replicon NC_013159
Organism: Saccharomonospora viridis DSM 43017



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013159  Svir_06500  carbohydrate ABC transporter membrane protein  100 
 
 
321 aa  639    Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0808  binding-protein-dependent transport systems inner membrane component  72.9 
 
 
318 aa  448  1e-125  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1200  binding-protein-dependent transport systems inner membrane component  69.77 
 
 
310 aa  424  1e-118  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4645  binding-protein-dependent transport systems inner membrane component  70.2 
 
 
299 aa  419  1e-116  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00190071 
 
 
-
 
NC_008146  Mmcs_3982  binding-protein-dependent transport systems inner membrane component  69.86 
 
 
308 aa  412  1e-114  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4056  binding-protein-dependent transport systems inner membrane component  69.86 
 
 
308 aa  412  1e-114  Mycobacterium sp. KMS  Bacteria  normal  0.853442  normal  0.685254 
 
 
-
 
NC_009077  Mjls_3996  binding-protein-dependent transport systems inner membrane component  69.86 
 
 
308 aa  411  1e-114  Mycobacterium sp. JLS  Bacteria  normal  0.172958  normal  0.378531 
 
 
-
 
NC_013441  Gbro_1867  binding-protein-dependent transport systems inner membrane component  70.2 
 
 
388 aa  413  1e-114  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11261  sugar-transport integral membrane protein ABC transporter sugA  67.82 
 
 
307 aa  392  1e-108  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.00812399 
 
 
-
 
NC_013947  Snas_1042  binding-protein-dependent transport systems inner membrane component  69.86 
 
 
292 aa  386  1e-106  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0233696  normal  0.724909 
 
 
-
 
NC_009921  Franean1_4616  binding-protein-dependent transport systems inner membrane component  67.56 
 
 
331 aa  365  1e-100  Frankia sp. EAN1pec  Bacteria  normal  0.338244  normal 
 
 
-
 
NC_007484  Noc_0281  ABC transporter, inner membrane subunit  58.76 
 
 
292 aa  319  5e-86  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_20480  carbohydrate ABC transporter membrane protein  50 
 
 
318 aa  295  7e-79  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0521728  normal  0.389193 
 
 
-
 
NC_009664  Krad_1114  binding-protein-dependent transport systems inner membrane component  48.84 
 
 
319 aa  283  3.0000000000000004e-75  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.32149  normal  0.356013 
 
 
-
 
NC_009338  Mflv_3852  binding-protein-dependent transport systems inner membrane component  51.03 
 
 
310 aa  280  3e-74  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0634568 
 
 
-
 
NC_012669  Bcav_1096  binding-protein-dependent transport systems inner membrane component  53.02 
 
 
315 aa  278  1e-73  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.175054  normal 
 
 
-
 
NC_008726  Mvan_2543  binding-protein-dependent transport systems inner membrane component  50.69 
 
 
310 aa  277  2e-73  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.944367  normal 
 
 
-
 
NC_013757  Gobs_3933  binding-protein-dependent transport systems inner membrane component  46.86 
 
 
320 aa  270  2e-71  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.292649  n/a   
 
 
-
 
NC_014151  Cfla_0961  binding-protein-dependent transport systems inner membrane component  50.16 
 
 
320 aa  258  8e-68  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.158412  hitchhiker  0.000108715 
 
 
-
 
NC_008541  Arth_3686  binding-protein-dependent transport systems inner membrane component  43.66 
 
 
310 aa  247  2e-64  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_04590  permease component of ABC-type sugar transporter  49.03 
 
 
323 aa  245  6e-64  Micrococcus luteus NCTC 2665  Bacteria  normal  0.359187  n/a   
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  44.57 
 
 
307 aa  211  1e-53  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  47.08 
 
 
435 aa  206  3e-52  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  46.67 
 
 
427 aa  204  2e-51  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_014210  Ndas_3354  binding-protein-dependent transport systems inner membrane component  39.72 
 
 
299 aa  202  9e-51  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2525  binding-protein-dependent transport systems inner membrane component  41.02 
 
 
330 aa  201  9.999999999999999e-51  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_1990  binding-protein-dependent transport systems inner membrane component  38.96 
 
 
306 aa  200  3e-50  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.306567  n/a   
 
 
-
 
NC_013525  Tter_0398  binding-protein-dependent transport systems inner membrane component  37.04 
 
 
312 aa  196  5.000000000000001e-49  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009718  Fnod_0449  binding-protein-dependent transport systems inner membrane component  38.01 
 
 
295 aa  186  3e-46  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.982578  n/a   
 
 
-
 
NC_009664  Krad_4016  binding-protein-dependent transport systems inner membrane component  36.67 
 
 
338 aa  186  4e-46  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0789775 
 
 
-
 
NC_009616  Tmel_1819  binding-protein-dependent transport systems inner membrane component  36.93 
 
 
293 aa  186  6e-46  Thermosipho melanesiensis BI429  Bacteria  normal  0.215175  n/a   
 
 
-
 
NC_013530  Xcel_2796  binding-protein-dependent transport systems inner membrane component  39.49 
 
 
355 aa  183  3e-45  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0971  binding-protein-dependent transport systems inner membrane component  36.14 
 
 
293 aa  181  1e-44  Thermotoga sp. RQ2  Bacteria  normal  0.0994152  n/a   
 
 
-
 
NC_009486  Tpet_0955  binding-protein-dependent transport systems inner membrane component  36.14 
 
 
293 aa  181  1e-44  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  35.86 
 
 
296 aa  181  2e-44  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_010003  Pmob_0028  binding-protein-dependent transport systems inner membrane component  37.63 
 
 
300 aa  178  1e-43  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000378352  n/a   
 
 
-
 
NC_009675  Anae109_1696  binding-protein-dependent transport systems inner membrane component  41.2 
 
 
291 aa  172  5e-42  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.00180742  normal 
 
 
-
 
NC_008025  Dgeo_0590  binding-protein-dependent transport systems inner membrane component  37.91 
 
 
315 aa  170  3e-41  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.273483  normal 
 
 
-
 
NC_009620  Smed_3811  binding-protein-dependent transport systems inner membrane component  35.03 
 
 
328 aa  169  8e-41  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0259  binding-protein-dependent transport systems inner membrane component  33.54 
 
 
324 aa  168  1e-40  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_2941  binding-protein-dependent transport systems inner membrane component  33.76 
 
 
320 aa  168  1e-40  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.974377  n/a   
 
 
-
 
NC_011368  Rleg2_5492  binding-protein-dependent transport systems inner membrane component  33.99 
 
 
328 aa  167  2e-40  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.511246  normal  0.17987 
 
 
-
 
NC_004311  BRA0305  sugar ABC transporter, permease protein  34.75 
 
 
325 aa  167  2.9999999999999998e-40  Brucella suis 1330  Bacteria  normal  0.0474821  n/a   
 
 
-
 
NC_007604  Synpcc7942_0949  permease protein of sugar ABC transporter  36.94 
 
 
292 aa  167  2.9999999999999998e-40  Synechococcus elongatus PCC 7942  Bacteria  normal  0.688345  normal 
 
 
-
 
NC_009654  Mmwyl1_0024  binding-protein-dependent transport systems inner membrane component  33.11 
 
 
320 aa  167  2.9999999999999998e-40  Marinomonas sp. MWYL1  Bacteria  normal  0.227719  normal  0.433481 
 
 
-
 
NC_013440  Hoch_3145  binding-protein-dependent transport systems inner membrane component  35.58 
 
 
303 aa  167  2.9999999999999998e-40  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.236219 
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
308 aa  166  4e-40  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0280  sugar ABC transporter, permease protein  34.75 
 
 
325 aa  166  4e-40  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2623  binding-protein-dependent transport systems inner membrane component  35.96 
 
 
330 aa  165  9e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0584633  normal 
 
 
-
 
NC_011886  Achl_0624  binding-protein-dependent transport systems inner membrane component  34.48 
 
 
345 aa  164  1.0000000000000001e-39  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.65014 
 
 
-
 
NC_013205  Aaci_2236  binding-protein-dependent transport systems inner membrane component  34.84 
 
 
315 aa  162  5.0000000000000005e-39  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2089  binding-protein-dependent transport systems inner membrane component  40.88 
 
 
293 aa  160  3e-38  Meiothermus ruber DSM 1279  Bacteria  decreased coverage  0.000000240561  normal  0.90976 
 
 
-
 
NC_008687  Pden_4441  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
320 aa  159  7e-38  Paracoccus denitrificans PD1222  Bacteria  normal  0.0272526  normal 
 
 
-
 
NC_010524  Lcho_3328  binding-protein-dependent transport systems inner membrane component  32.53 
 
 
304 aa  151  1e-35  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009620  Smed_4397  binding-protein-dependent transport systems inner membrane component  36.82 
 
 
297 aa  151  1e-35  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.439093 
 
 
-
 
NC_007005  Psyr_0761  binding-protein dependent transport system inner membrane protein  35.76 
 
 
320 aa  149  5e-35  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0629996  normal  0.824676 
 
 
-
 
NC_014165  Tbis_1088  binding-protein-dependent transporter inner membrane component  32.97 
 
 
288 aa  149  5e-35  Thermobispora bispora DSM 43833  Bacteria  normal  0.616528  hitchhiker  0.00755847 
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
294 aa  149  6e-35  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_19880  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
323 aa  149  7e-35  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  31.63 
 
 
314 aa  148  1.0000000000000001e-34  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_012850  Rleg_2284  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
291 aa  147  3e-34  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.257134 
 
 
-
 
NC_009664  Krad_2091  binding-protein-dependent transport systems inner membrane component  34.52 
 
 
292 aa  145  6e-34  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  33.23 
 
 
309 aa  146  6e-34  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  31.01 
 
 
312 aa  145  7.0000000000000006e-34  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
313 aa  145  1e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0414  binding-protein-dependent transport systems inner membrane component  47.34 
 
 
345 aa  144  2e-33  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1501  binding-protein-dependent transport systems inner membrane component  33.11 
 
 
304 aa  144  2e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.707606 
 
 
-
 
NC_009485  BBta_7824  putative ABC transporter permease protein  32.96 
 
 
295 aa  144  2e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_4864  binding-protein-dependent transport systems inner membrane component  33 
 
 
319 aa  144  2e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.243677  normal  0.263269 
 
 
-
 
NC_010003  Pmob_0073  binding-protein-dependent transport systems inner membrane component  29.02 
 
 
294 aa  144  3e-33  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_2556  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
318 aa  144  3e-33  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2601  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
318 aa  144  3e-33  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  30.69 
 
 
312 aa  143  4e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_009077  Mjls_2595  binding-protein-dependent transport systems inner membrane component  32.68 
 
 
318 aa  143  4e-33  Mycobacterium sp. JLS  Bacteria  normal  0.177004  normal  0.445691 
 
 
-
 
NC_011369  Rleg2_3668  binding-protein-dependent transport systems inner membrane component  32.78 
 
 
299 aa  142  6e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2196  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
285 aa  142  6e-33  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00879782  n/a   
 
 
-
 
NC_009664  Krad_4401  binding-protein-dependent transport systems inner membrane component  32.15 
 
 
316 aa  142  8e-33  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  37 
 
 
295 aa  142  9e-33  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  32.44 
 
 
312 aa  142  9.999999999999999e-33  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_012848  Rleg_4941  binding-protein-dependent transport systems inner membrane component  29.64 
 
 
309 aa  140  1.9999999999999998e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_1016  binding-protein-dependent transport systems inner membrane component  34.63 
 
 
301 aa  140  1.9999999999999998e-32  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_1330  binding-protein-dependent transport systems inner membrane component  33.65 
 
 
316 aa  141  1.9999999999999998e-32  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03710  carbohydrate ABC transporter membrane protein  35.58 
 
 
332 aa  139  3.9999999999999997e-32  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.899537 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
313 aa  140  3.9999999999999997e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_004578  PSPTO_0888  sugar ABC transporter, permease protein  36.11 
 
 
320 aa  139  7e-32  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.392731  n/a   
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  33.97 
 
 
280 aa  138  1e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
286 aa  137  2e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  33.98 
 
 
286 aa  137  3.0000000000000003e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5714  binding-protein-dependent transport systems inner membrane component  30.89 
 
 
310 aa  136  5e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.568061 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  32.01 
 
 
300 aa  135  8e-31  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_008146  Mmcs_2419  binding-protein-dependent transport systems inner membrane component  34.57 
 
 
286 aa  135  9e-31  Mycobacterium sp. MCS  Bacteria  normal  0.235933  n/a   
 
 
-
 
NC_008705  Mkms_2464  binding-protein-dependent transport systems inner membrane component  34.57 
 
 
286 aa  135  9e-31  Mycobacterium sp. KMS  Bacteria  normal  0.80505  normal 
 
 
-
 
NC_009077  Mjls_2458  binding-protein-dependent transport systems inner membrane component  34.57 
 
 
286 aa  135  9e-31  Mycobacterium sp. JLS  Bacteria  normal  0.524108  normal 
 
 
-
 
NC_011899  Hore_22990  binding-protein-dependent transport systems inner membrane component  31.07 
 
 
286 aa  134  1.9999999999999998e-30  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000108841  n/a   
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
287 aa  134  1.9999999999999998e-30  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A2083  carbohydrate ABC transporter permease  33.59 
 
 
286 aa  134  1.9999999999999998e-30  Yersinia pestis Angola  Bacteria  normal  normal  0.0183943 
 
 
-
 
NC_012848  Rleg_5336  binding-protein-dependent transport systems inner membrane component  30.55 
 
 
310 aa  134  1.9999999999999998e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.369054 
 
 
-
 
NC_008786  Veis_2012  binding-protein-dependent transport systems inner membrane component  31.27 
 
 
310 aa  133  3.9999999999999996e-30  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.395958 
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  29.35 
 
 
318 aa  132  7.999999999999999e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
306 aa  132  7.999999999999999e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
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