More than 300 homologs were found in PanDaTox collection
for query gene Suden_0009 on replicon NC_007575
Organism: Sulfurimonas denitrificans DSM 1251



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007575  Suden_0009  two component transcriptional regulator  100 
 
 
224 aa  440  1e-123  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0685  response regulator receiver  33.78 
 
 
236 aa  125  4.0000000000000003e-28  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0749  two component transcriptional regulator  32.57 
 
 
230 aa  122  6e-27  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0736  response regulator receiver  31.13 
 
 
236 aa  104  9e-22  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1869  NAD(P)H-flavin oxidoreductase  30.36 
 
 
229 aa  102  4e-21  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0448  response regulator receiver  27.43 
 
 
224 aa  99.8  3e-20  Sulfurospirillum deleyianum DSM 6946  Bacteria  unclonable  0.00000000838603  n/a   
 
 
-
 
NC_013512  Sdel_0892  response regulator receiver  26.48 
 
 
233 aa  94.4  1e-18  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0705  response regulator receiver  28.12 
 
 
231 aa  91.3  1e-17  Sulfurospirillum deleyianum DSM 6946  Bacteria  hitchhiker  0.00025775  n/a   
 
 
-
 
NC_013512  Sdel_0363  response regulator receiver  30.57 
 
 
228 aa  91.3  1e-17  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0247  two component transcriptional regulator  26.24 
 
 
226 aa  87.4  1e-16  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_2139  response regulator receiver  27.73 
 
 
236 aa  88.2  1e-16  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1974  two component transcriptional regulator, winged helix family protein  27.4 
 
 
223 aa  87.4  2e-16  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.667108 
 
 
-
 
NC_009715  CCV52592_0851  two component transcriptional regulator  27.68 
 
 
230 aa  85.9  4e-16  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1802  two component transcriptional regulator  29.09 
 
 
227 aa  85.5  5e-16  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008528  OEOE_1773  DNA-binding response regulator  31.19 
 
 
224 aa  85.9  5e-16  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1493  two component transcriptional regulator, winged helix family  26.32 
 
 
233 aa  84  0.000000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007575  Suden_0964  two component transcriptional regulator  31.88 
 
 
258 aa  83.6  0.000000000000002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.412408  n/a   
 
 
-
 
NC_007575  Suden_1880  two component transcriptional regulator  28.51 
 
 
223 aa  83.6  0.000000000000003  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_24140  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  25.23 
 
 
231 aa  82.8  0.000000000000003  Saccharomonospora viridis DSM 43017  Bacteria  decreased coverage  0.00201668  decreased coverage  0.0036779 
 
 
-
 
NC_008599  CFF8240_0377  DNA-binding response regulator  26.79 
 
 
226 aa  83.2  0.000000000000003  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.306284  n/a   
 
 
-
 
NC_009832  Spro_2013  DNA-binding transcriptional regulator PhoP  27.31 
 
 
223 aa  82.8  0.000000000000004  Serratia proteamaculans 568  Bacteria  normal  normal  0.067134 
 
 
-
 
NC_009953  Sare_1458  two component transcriptional regulator  23.26 
 
 
222 aa  82.4  0.000000000000005  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00630531 
 
 
-
 
NC_010159  YpAngola_A2855  DNA-binding transcriptional regulator PhoP  27.93 
 
 
223 aa  81.6  0.000000000000009  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1608  DNA-binding transcriptional regulator PhoP  27.93 
 
 
223 aa  81.6  0.000000000000009  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1727  two component transcriptional regulator  24.09 
 
 
228 aa  81.6  0.000000000000009  Opitutus terrae PB90-1  Bacteria  normal  0.284746  normal 
 
 
-
 
NC_010465  YPK_1715  DNA-binding transcriptional regulator PhoP  27.93 
 
 
223 aa  81.3  0.00000000000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0304  response regulator receiver protein  24.07 
 
 
218 aa  80.9  0.00000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.818258  normal 
 
 
-
 
NC_013739  Cwoe_3363  two component transcriptional regulator, winged helix family  23.15 
 
 
218 aa  80.9  0.00000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0369165 
 
 
-
 
CP001509  ECD_01128  DNA-binding response regulator in two-component regulatory system with PhoQ  29.29 
 
 
223 aa  80.9  0.00000000000002  Escherichia coli BL21(DE3)  Bacteria  normal  0.910835  n/a   
 
 
-
 
CP001637  EcDH1_2517  two component transcriptional regulator, winged helix family  29.29 
 
 
223 aa  80.9  0.00000000000002  Escherichia coli DH1  Bacteria  normal  0.0459987  n/a   
 
 
-
 
NC_011094  SeSA_A1310  DNA-binding transcriptional regulator PhoP  27.85 
 
 
224 aa  80.5  0.00000000000002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.237463 
 
 
-
 
NC_013510  Tcur_4122  two component transcriptional regulator, winged helix family  27.75 
 
 
223 aa  80.5  0.00000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1250  DNA-binding transcriptional regulator PhoP  29.29 
 
 
223 aa  80.9  0.00000000000002  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_01136  hypothetical protein  29.29 
 
 
223 aa  80.9  0.00000000000002  Escherichia coli BL21  Bacteria  normal  0.982846  n/a   
 
 
-
 
NC_009801  EcE24377A_1293  DNA-binding transcriptional regulator PhoP  29.29 
 
 
223 aa  80.9  0.00000000000002  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1348  DNA-binding transcriptional regulator PhoP  27.85 
 
 
224 aa  80.5  0.00000000000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.898819 
 
 
-
 
NC_010658  SbBS512_E1308  DNA-binding transcriptional regulator PhoP  29.29 
 
 
223 aa  80.9  0.00000000000002  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1953  DNA-binding transcriptional regulator PhoP  27.85 
 
 
224 aa  80.5  0.00000000000002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2473  DNA-binding transcriptional regulator PhoP  29.29 
 
 
223 aa  80.9  0.00000000000002  Escherichia coli ATCC 8739  Bacteria  normal  0.751348  normal 
 
 
-
 
NC_011080  SNSL254_A1332  DNA-binding transcriptional regulator PhoP  27.85 
 
 
224 aa  80.5  0.00000000000002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.536872  normal  0.137 
 
 
-
 
NC_010571  Oter_1614  two component transcriptional regulator  21.92 
 
 
226 aa  80.5  0.00000000000002  Opitutus terrae PB90-1  Bacteria  normal  normal  0.722606 
 
 
-
 
NC_010498  EcSMS35_1995  DNA-binding transcriptional regulator PhoP  29.29 
 
 
223 aa  80.9  0.00000000000002  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2135  DNA-binding transcriptional regulator PhoP  27.85 
 
 
224 aa  80.5  0.00000000000002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.0423358 
 
 
-
 
NC_011988  Avi_6108  two component response regulator  25.35 
 
 
226 aa  80.1  0.00000000000003  Agrobacterium vitis S4  Bacteria  normal  0.655098  n/a   
 
 
-
 
NC_007333  Tfu_1941  response regulator receiver  26.51 
 
 
217 aa  79.7  0.00000000000004  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1458  two component transcriptional regulator  27.86 
 
 
218 aa  79.3  0.00000000000005  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1643  DNA-binding transcriptional regulator PhoP  28.5 
 
 
224 aa  79  0.00000000000005  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_1591  DNA-binding transcriptional regulator PhoP  29.29 
 
 
223 aa  79  0.00000000000006  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  0.0000245208 
 
 
-
 
NC_013131  Caci_6645  two component transcriptional regulator, winged helix family  24.65 
 
 
217 aa  79  0.00000000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.129361 
 
 
-
 
NC_010184  BcerKBAB4_2944  two component transcriptional regulator  23.5 
 
 
224 aa  78.6  0.00000000000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0958095  n/a   
 
 
-
 
NC_011989  Avi_3337  two component response regulator  26.73 
 
 
221 aa  78.6  0.00000000000007  Agrobacterium vitis S4  Bacteria  normal  0.986169  n/a   
 
 
-
 
NC_013061  Phep_1345  response regulator receiver  27.68 
 
 
227 aa  78.2  0.00000000000008  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.71904 
 
 
-
 
NC_009380  Strop_1496  response regulator receiver  22.79 
 
 
222 aa  78.2  0.00000000000008  Salinispora tropica CNB-440  Bacteria  normal  0.23196  normal  0.62159 
 
 
-
 
NC_005945  BAS2999  DNA-binding response regulator  23.96 
 
 
224 aa  78.2  0.0000000000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.227145  n/a   
 
 
-
 
NC_007530  GBAA_3229  DNA-binding response regulator  23.96 
 
 
224 aa  78.2  0.0000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_3235  DNA-binding response regulator  23.96 
 
 
224 aa  77.8  0.0000000000001  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013595  Sros_1333  response regulator receiver protein  26.67 
 
 
222 aa  77.8  0.0000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.40527  normal  0.1595 
 
 
-
 
NC_008786  Veis_0357  two component transcriptional regulator  27.4 
 
 
226 aa  77.8  0.0000000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.369065 
 
 
-
 
NC_008817  P9515_18081  two-component response regulator  24.02 
 
 
248 aa  77.8  0.0000000000001  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5089  two component transcriptional regulator, winged helix family  20.19 
 
 
242 aa  77.4  0.0000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.160869  normal  0.250223 
 
 
-
 
NC_010717  PXO_04659  two-component system regulatory protein  23.85 
 
 
237 aa  77.4  0.0000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0184239  n/a   
 
 
-
 
NC_011071  Smal_0652  two component transcriptional regulator, winged helix family  23.85 
 
 
237 aa  77.4  0.0000000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.174117  normal 
 
 
-
 
NC_008599  CFF8240_0140  two component transcriptional regulator  27.15 
 
 
229 aa  77.4  0.0000000000002  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.794843  n/a   
 
 
-
 
NC_010001  Cphy_0618  two component AraC family transcriptional regulator  26.11 
 
 
258 aa  77  0.0000000000002  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.00000605397  n/a   
 
 
-
 
NC_014158  Tpau_3286  two component transcriptional regulator, winged helix family  21.36 
 
 
228 aa  76.3  0.0000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.167791  n/a   
 
 
-
 
NC_014165  Tbis_0707  winged helix family two component transcriptional regulator  26.67 
 
 
222 aa  76.6  0.0000000000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1694  two component transcriptional regulator, winged helix family  24.54 
 
 
217 aa  76.6  0.0000000000003  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00296965  n/a   
 
 
-
 
NC_009253  Dred_0323  two component transcriptional regulator  25.97 
 
 
227 aa  76.3  0.0000000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1017  two component transcriptional regulator  25.98 
 
 
229 aa  76.6  0.0000000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.957911  normal  0.735899 
 
 
-
 
NC_013947  Snas_5939  two component transcriptional regulator, winged helix family  22.79 
 
 
218 aa  76.3  0.0000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_02792  response regulator  24.15 
 
 
225 aa  76.6  0.0000000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010511  M446_6140  two component transcriptional regulator  26.15 
 
 
221 aa  76.6  0.0000000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.0752147  normal 
 
 
-
 
NC_003912  CJE1664  DNA-binding response regulator  24.19 
 
 
226 aa  76.3  0.0000000000004  Campylobacter jejuni RM1221  Bacteria  normal  0.690265  n/a   
 
 
-
 
NC_013171  Apre_1093  two component transcriptional regulator, winged helix family  26.24 
 
 
226 aa  76.3  0.0000000000004  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_49180  two-component response regulator PhoP  26.85 
 
 
225 aa  76.3  0.0000000000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.000831037 
 
 
-
 
NC_008819  NATL1_20711  two-component response regulator  23.7 
 
 
246 aa  75.9  0.0000000000004  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A3221  DNA-binding response regulator  23.04 
 
 
224 aa  75.9  0.0000000000005  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0876  two component transcriptional regulator  26.48 
 
 
224 aa  75.9  0.0000000000005  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.478428 
 
 
-
 
NC_009921  Franean1_6946  two component transcriptional regulator  21.76 
 
 
219 aa  75.9  0.0000000000005  Frankia sp. EAN1pec  Bacteria  normal  normal  0.383627 
 
 
-
 
NC_008825  Mpe_A0076  two component transcriptional regulator  26.82 
 
 
223 aa  75.9  0.0000000000005  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.225452 
 
 
-
 
NC_007298  Daro_2815  response regulator receiver:transcriptional regulatory protein, C-terminal  26.85 
 
 
218 aa  75.5  0.0000000000006  Dechloromonas aromatica RCB  Bacteria  normal  0.877458  normal 
 
 
-
 
NC_011772  BCG9842_B2033  DNA-binding response regulator  23.04 
 
 
224 aa  75.5  0.0000000000006  Bacillus cereus G9842  Bacteria  normal  0.725953  normal 
 
 
-
 
NC_011369  Rleg2_3341  two component transcriptional regulator, winged helix family  24.88 
 
 
225 aa  75.5  0.0000000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.219699 
 
 
-
 
NC_013159  Svir_31270  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  24.77 
 
 
221 aa  75.5  0.0000000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.014564  normal  0.249814 
 
 
-
 
NC_010814  Glov_3210  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  29.75 
 
 
425 aa  75.5  0.0000000000006  Geobacter lovleyi SZ  Bacteria  normal  0.141244  n/a   
 
 
-
 
NC_011894  Mnod_6194  two component transcriptional regulator, winged helix family  24.54 
 
 
222 aa  75.5  0.0000000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2885  two component transcriptional regulator, winged helix family  23.47 
 
 
217 aa  75.5  0.0000000000007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.56822 
 
 
-
 
NC_007335  PMN2A_1196  two component transcriptional regulator  23.7 
 
 
246 aa  75.1  0.0000000000007  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_3349  two component transcriptional regulator, winged helix family  26.48 
 
 
224 aa  75.5  0.0000000000007  Acidovorax ebreus TPSY  Bacteria  normal  0.142225  n/a   
 
 
-
 
NC_013131  Caci_0835  two component transcriptional regulator, winged helix family  24.11 
 
 
222 aa  75.1  0.0000000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  hitchhiker  0.0000000540746 
 
 
-
 
NC_008782  Ajs_3999  two component transcriptional regulator  26.48 
 
 
224 aa  75.5  0.0000000000007  Acidovorax sp. JS42  Bacteria  normal  normal  0.901243 
 
 
-
 
NC_007925  RPC_4932  two component transcriptional regulator  24.54 
 
 
221 aa  75.1  0.0000000000008  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.202515 
 
 
-
 
NC_009656  PSPA7_4200  two-component response regulator PhoP  26.39 
 
 
225 aa  75.1  0.0000000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  0.238609  n/a   
 
 
-
 
NC_008752  Aave_4638  two component transcriptional regulator  26.7 
 
 
224 aa  75.1  0.0000000000008  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1394  two component transcriptional regulator  28.38 
 
 
236 aa  75.1  0.0000000000008  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000024965  n/a   
 
 
-
 
NC_007614  Nmul_A0706  two component transcriptional regulator  25.45 
 
 
233 aa  75.1  0.0000000000009  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_1920  response regulator receiver  27.95 
 
 
226 aa  75.1  0.0000000000009  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4114  response regulator receiver  25.81 
 
 
221 aa  74.3  0.000000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.584042  normal 
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  25.11 
 
 
225 aa  74.3  0.000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008816  A9601_18291  two-component response regulator  23.14 
 
 
248 aa  74.7  0.000000000001  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.276613  n/a   
 
 
-
 
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