More than 300 homologs were found in PanDaTox collection
for query gene Strop_1258 on replicon NC_009380
Organism: Salinispora tropica CNB-440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013595  Sros_8018  3-isopropylmalate dehydratase, large subunit  72.94 
 
 
459 aa  703    Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0194  3-isopropylmalate dehydratase, large subunit  67.31 
 
 
469 aa  649    Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009953  Sare_1149  isopropylmalate isomerase large subunit  93.76 
 
 
481 aa  910    Salinispora arenicola CNS-205  Bacteria  normal  unclonable  0.0000000597548 
 
 
-
 
NC_009380  Strop_1258  isopropylmalate isomerase large subunit  100 
 
 
481 aa  969    Salinispora tropica CNB-440  Bacteria  normal  0.55744  normal  0.382246 
 
 
-
 
NC_007333  Tfu_0626  isopropylmalate isomerase large subunit  73.36 
 
 
465 aa  722    Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1573  3-isopropylmalate dehydratase, large subunit  70.91 
 
 
493 aa  668    Beutenbergia cavernae DSM 12333  Bacteria  normal  0.488131  normal 
 
 
-
 
NC_013510  Tcur_3463  3-isopropylmalate dehydratase, large subunit  73.15 
 
 
465 aa  703    Thermomonospora curvata DSM 43183  Bacteria  normal  0.0762821  n/a   
 
 
-
 
NC_014165  Tbis_2802  3-isopropylmalate dehydratase large subunit  74.42 
 
 
462 aa  708    Thermobispora bispora DSM 43833  Bacteria  normal  0.0861644  normal  0.228539 
 
 
-
 
NC_014151  Cfla_2316  3-isopropylmalate dehydratase, large subunit  70.82 
 
 
487 aa  672    Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000114053 
 
 
-
 
NC_013947  Snas_4999  3-isopropylmalate dehydratase large subunit  74.89 
 
 
470 aa  731    Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.653294  normal  0.386887 
 
 
-
 
NC_013093  Amir_6006  3-isopropylmalate dehydratase, large subunit  74.68 
 
 
472 aa  692    Actinosynnema mirum DSM 43827  Bacteria  normal  0.0519027  n/a   
 
 
-
 
NC_007777  Francci3_3621  isopropylmalate isomerase large subunit  72.3 
 
 
465 aa  675    Frankia sp. CcI3  Bacteria  normal  normal  0.766514 
 
 
-
 
NC_013131  Caci_8049  3-isopropylmalate dehydratase, large subunit  74.74 
 
 
468 aa  723    Catenulispora acidiphila DSM 44928  Bacteria  normal  0.200463  normal 
 
 
-
 
NC_012803  Mlut_08740  3-isopropylmalate dehydratase, large subunit  72.22 
 
 
484 aa  702    Micrococcus luteus NCTC 2665  Bacteria  decreased coverage  0.000460564  n/a   
 
 
-
 
NC_013521  Sked_11100  3-isopropylmalate dehydratase, large subunit  71.25 
 
 
479 aa  681    Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_09060  3-isopropylmalate dehydratase, large subunit  74.26 
 
 
471 aa  717    Saccharomonospora viridis DSM 43017  Bacteria  normal  0.918212  normal 
 
 
-
 
NC_013235  Namu_1478  3-isopropylmalate dehydratase, large subunit  73.09 
 
 
486 aa  705    Nakamurella multipartita DSM 44233  Bacteria  normal  0.333411  normal  0.827202 
 
 
-
 
NC_009338  Mflv_4227  isopropylmalate isomerase large subunit  71.55 
 
 
481 aa  697    Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.888543 
 
 
-
 
NC_009664  Krad_1358  3-isopropylmalate dehydratase, large subunit  72.15 
 
 
477 aa  689    Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.849318 
 
 
-
 
NC_008146  Mmcs_1921  isopropylmalate isomerase large subunit  72.65 
 
 
481 aa  704    Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0278  isopropylmalate isomerase large subunit  64.42 
 
 
469 aa  643    Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4053  3-isopropylmalate dehydratase, large subunit  72.78 
 
 
474 aa  703    Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2256  isopropylmalate isomerase large subunit  71.34 
 
 
484 aa  696    Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000783708 
 
 
-
 
NC_014210  Ndas_0185  3-isopropylmalate dehydratase, large subunit  73.21 
 
 
468 aa  701    Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.08009  normal 
 
 
-
 
NC_009565  TBFG_13003  isopropylmalate isomerase large subunit  70.5 
 
 
473 aa  686    Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_3215  3-isopropylmalate dehydratase, large subunit  68.85 
 
 
477 aa  677    Gordonia bronchialis DSM 43247  Bacteria  normal  0.056695  n/a   
 
 
-
 
NC_009077  Mjls_1901  isopropylmalate isomerase large subunit  72.65 
 
 
481 aa  705    Mycobacterium sp. JLS  Bacteria  normal  normal  0.918864 
 
 
-
 
NC_013530  Xcel_2357  3-isopropylmalate dehydratase, large subunit  70.82 
 
 
517 aa  670    Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_2519  isopropylmalate isomerase large subunit  70.92 
 
 
484 aa  688    Arthrobacter sp. FB24  Bacteria  normal  0.252815  n/a   
 
 
-
 
NC_009921  Franean1_1113  isopropylmalate isomerase large subunit  73.36 
 
 
465 aa  682    Frankia sp. EAN1pec  Bacteria  normal  0.681996  normal  0.828695 
 
 
-
 
NC_008578  Acel_1591  isopropylmalate isomerase large subunit  77.17 
 
 
473 aa  733    Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.777227 
 
 
-
 
NC_014158  Tpau_2848  3-isopropylmalate dehydratase, large subunit  69.33 
 
 
481 aa  668    Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3298  3-isopropylmalate dehydratase, large subunit  73.15 
 
 
471 aa  711    Nocardioides sp. JS614  Bacteria  normal  0.405916  n/a   
 
 
-
 
NC_008705  Mkms_1967  isopropylmalate isomerase large subunit  72.65 
 
 
481 aa  704    Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2135  isopropylmalate isomerase large subunit  71.34 
 
 
481 aa  702    Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_18560  3-isopropylmalate dehydratase, large subunit  72.3 
 
 
479 aa  684    Brachybacterium faecium DSM 4810  Bacteria  normal  0.242112  n/a   
 
 
-
 
NC_013124  Afer_1534  3-isopropylmalate dehydratase, large subunit  68.35 
 
 
468 aa  618  1e-176  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.706683  n/a   
 
 
-
 
NC_010816  BLD_1596  isopropylmalate isomerase large subunit  65.05 
 
 
467 aa  608  1e-173  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00074  isopropylmalate isomerase large subunit  63.68 
 
 
466 aa  598  1e-170  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3526  3-isopropylmalate dehydratase, large subunit  63.68 
 
 
466 aa  598  1e-170  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0077  isopropylmalate isomerase large subunit  63.46 
 
 
466 aa  598  1e-170  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00073  hypothetical protein  63.68 
 
 
466 aa  598  1e-170  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0077  isopropylmalate isomerase large subunit  63.68 
 
 
466 aa  598  1e-170  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.387894 
 
 
-
 
NC_010658  SbBS512_E0066  isopropylmalate isomerase large subunit  63.68 
 
 
466 aa  598  1e-170  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3585  isopropylmalate isomerase large subunit  63.46 
 
 
466 aa  598  1e-170  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.000478946 
 
 
-
 
NC_013421  Pecwa_3797  isopropylmalate isomerase large subunit  62.82 
 
 
466 aa  596  1e-169  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1549  isopropylmalate isomerase large subunit  63.35 
 
 
472 aa  597  1e-169  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.269438  normal  0.14031 
 
 
-
 
NC_013411  GYMC61_0861  isopropylmalate isomerase large subunit  60.77 
 
 
471 aa  598  1e-169  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011353  ECH74115_0079  isopropylmalate isomerase large subunit  63.46 
 
 
466 aa  595  1e-169  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_0075  isopropylmalate isomerase large subunit  63.46 
 
 
466 aa  595  1e-169  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0620  isopropylmalate isomerase large subunit  63.25 
 
 
466 aa  592  1e-168  Enterobacter sp. 638  Bacteria  normal  normal  0.135441 
 
 
-
 
NC_012917  PC1_3609  isopropylmalate isomerase large subunit  62.61 
 
 
466 aa  592  1e-168  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0592  3-isopropylmalate dehydratase, large subunit  62.39 
 
 
466 aa  588  1e-167  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2591  isopropylmalate isomerase large subunit  60.55 
 
 
471 aa  588  1e-167  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00933091  n/a   
 
 
-
 
NC_013412  GYMC61_3567  isopropylmalate isomerase large subunit  60.51 
 
 
477 aa  586  1e-166  Geobacillus sp. Y412MC61  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B0127  isopropylmalate isomerase large subunit  62.82 
 
 
466 aa  585  1e-166  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1961  isopropylmalate isomerase large subunit  62.58 
 
 
474 aa  585  1e-166  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0120  isopropylmalate isomerase large subunit  62.82 
 
 
466 aa  585  1e-166  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A0127  isopropylmalate isomerase large subunit  62.82 
 
 
466 aa  585  1e-166  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.03719 
 
 
-
 
NC_008009  Acid345_2916  isopropylmalate isomerase large subunit  63.03 
 
 
470 aa  585  1e-166  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_0743  isopropylmalate isomerase large subunit  62.64 
 
 
466 aa  582  1.0000000000000001e-165  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0123  isopropylmalate isomerase large subunit  62.61 
 
 
466 aa  583  1.0000000000000001e-165  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.610682  normal  0.713431 
 
 
-
 
NC_011083  SeHA_C0122  isopropylmalate isomerase large subunit  62.61 
 
 
466 aa  583  1.0000000000000001e-165  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.924094  normal  0.160243 
 
 
-
 
NC_013456  VEA_001658  3-isopropylmalate dehydratase large subunit  61.46 
 
 
466 aa  580  1e-164  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3537  isopropylmalate isomerase large subunit  61.44 
 
 
476 aa  581  1e-164  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00815  isopropylmalate isomerase large subunit  61.03 
 
 
466 aa  579  1e-164  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012880  Dd703_0630  3-isopropylmalate dehydratase, large subunit  61.54 
 
 
466 aa  580  1e-164  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3407  isopropylmalate isomerase large subunit  61.44 
 
 
476 aa  581  1e-164  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2938  isopropylmalate isomerase large subunit  61.44 
 
 
476 aa  581  1e-164  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1189  isopropylmalate isomerase large subunit  60.77 
 
 
472 aa  576  1.0000000000000001e-163  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.672672  n/a   
 
 
-
 
NC_013739  Cwoe_3550  3-isopropylmalate dehydratase, large subunit  62.39 
 
 
456 aa  575  1.0000000000000001e-163  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_4441  isopropylmalate isomerase large subunit  60.77 
 
 
471 aa  577  1.0000000000000001e-163  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3586  isopropylmalate isomerase large subunit  60.75 
 
 
474 aa  572  1.0000000000000001e-162  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3759  isopropylmalate isomerase large subunit  60.75 
 
 
474 aa  572  1.0000000000000001e-162  Shewanella sp. ANA-3  Bacteria  normal  normal  0.134544 
 
 
-
 
NC_009438  Sputcn32_0473  isopropylmalate isomerase large subunit  60.39 
 
 
474 aa  572  1.0000000000000001e-162  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0399  isopropylmalate isomerase large subunit  59.96 
 
 
468 aa  568  1e-161  Shewanella baltica OS195  Bacteria  normal  hitchhiker  0.000573464 
 
 
-
 
NC_011663  Sbal223_0413  isopropylmalate isomerase large subunit  59.96 
 
 
468 aa  568  1e-161  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.000000000169798 
 
 
-
 
NC_007493  RSP_0863  isopropylmalate isomerase large subunit  60.34 
 
 
475 aa  570  1e-161  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03087  isopropylmalate isomerase large subunit  60.26 
 
 
466 aa  568  1e-161  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0387  isopropylmalate isomerase large subunit  59.96 
 
 
468 aa  568  1e-161  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0158  isopropylmalate isomerase large subunit  60.26 
 
 
472 aa  568  1e-161  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008309  HS_0390  isopropylmalate isomerase large subunit  60.9 
 
 
469 aa  568  1e-161  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2523  isopropylmalate isomerase large subunit  60.55 
 
 
475 aa  570  1e-161  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.520601  normal 
 
 
-
 
NC_004347  SO_4234  isopropylmalate isomerase large subunit  59.91 
 
 
474 aa  567  1e-160  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_3826  isopropylmalate isomerase large subunit  60.17 
 
 
466 aa  568  1e-160  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0370  isopropylmalate isomerase large subunit  60.71 
 
 
474 aa  567  1e-160  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_2149  isopropylmalate isomerase large subunit  61.13 
 
 
466 aa  564  1.0000000000000001e-159  Acidiphilium cryptum JF-5  Bacteria  normal  0.754808  n/a   
 
 
-
 
NC_011831  Cagg_1245  isopropylmalate isomerase large subunit  65.5 
 
 
477 aa  563  1.0000000000000001e-159  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4548  isopropylmalate isomerase large subunit  59.31 
 
 
466 aa  563  1.0000000000000001e-159  Shewanella woodyi ATCC 51908  Bacteria  normal  0.182173  normal  0.0136159 
 
 
-
 
NC_009052  Sbal_0388  isopropylmalate isomerase large subunit  59.74 
 
 
468 aa  564  1.0000000000000001e-159  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2067  isopropylmalate isomerase large subunit  61.67 
 
 
467 aa  564  1.0000000000000001e-159  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3470  isopropylmalate isomerase large subunit  59.31 
 
 
466 aa  563  1.0000000000000001e-159  Shewanella loihica PV-4  Bacteria  normal  0.510231  normal  0.406012 
 
 
-
 
NC_009831  Ssed_0395  isopropylmalate isomerase large subunit  59.53 
 
 
466 aa  562  1.0000000000000001e-159  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000243407 
 
 
-
 
NC_011312  VSAL_I0375  isopropylmalate isomerase large subunit  59.74 
 
 
471 aa  559  1e-158  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1423  3-isopropylmalate dehydratase, large subunit  57.72 
 
 
473 aa  560  1e-158  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0337  isopropylmalate isomerase large subunit  60.44 
 
 
470 aa  559  1e-158  Shewanella amazonensis SB2B  Bacteria  normal  0.301995  normal  0.508758 
 
 
-
 
NC_009505  BOV_1834  isopropylmalate isomerase large subunit  60.26 
 
 
469 aa  557  1e-157  Brucella ovis ATCC 25840  Bacteria  normal  0.538456  n/a   
 
 
-
 
NC_013205  Aaci_2225  3-isopropylmalate dehydratase, large subunit  61.88 
 
 
471 aa  555  1e-157  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.918253  n/a   
 
 
-
 
NC_010338  Caul_0216  isopropylmalate isomerase large subunit  58.07 
 
 
480 aa  555  1e-157  Caulobacter sp. K31  Bacteria  normal  normal  0.146559 
 
 
-
 
NC_009636  Smed_3059  isopropylmalate isomerase large subunit  59.19 
 
 
469 aa  557  1e-157  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
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