More than 300 homologs were found in PanDaTox collection
for query gene Ssed_4463 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  100 
 
 
552 aa  1113    Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  67.21 
 
 
552 aa  712    Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  48.62 
 
 
638 aa  305  1.0000000000000001e-81  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  50.43 
 
 
543 aa  302  1e-80  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  49 
 
 
713 aa  301  2e-80  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  47.49 
 
 
712 aa  298  1e-79  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  47.77 
 
 
712 aa  298  2e-79  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  53.69 
 
 
637 aa  298  2e-79  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  46.36 
 
 
634 aa  295  1e-78  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  50.56 
 
 
634 aa  295  1e-78  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  41.87 
 
 
634 aa  294  2e-78  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  51.9 
 
 
679 aa  293  5e-78  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  48.66 
 
 
716 aa  288  1e-76  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  40.78 
 
 
637 aa  284  2.0000000000000002e-75  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  44.69 
 
 
773 aa  280  5e-74  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  51.06 
 
 
636 aa  280  6e-74  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  46.84 
 
 
523 aa  277  3e-73  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  46.69 
 
 
541 aa  277  3e-73  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_011901  Tgr7_0712  putative methyl-accepting chemotaxis sensory transducer  49.24 
 
 
624 aa  277  4e-73  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  36.53 
 
 
621 aa  276  8e-73  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  43.63 
 
 
620 aa  275  1.0000000000000001e-72  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  46.2 
 
 
568 aa  274  3e-72  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  47.53 
 
 
638 aa  273  5.000000000000001e-72  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  47.53 
 
 
638 aa  273  7e-72  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  47.22 
 
 
638 aa  271  2e-71  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  44.81 
 
 
620 aa  271  2.9999999999999997e-71  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  45.58 
 
 
620 aa  271  2.9999999999999997e-71  Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  43.43 
 
 
640 aa  270  5e-71  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  43.87 
 
 
541 aa  268  1e-70  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_011901  Tgr7_1425  methyl-accepting chemotaxis sensory transducer  51.27 
 
 
438 aa  268  2e-70  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  46.91 
 
 
638 aa  268  2e-70  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  43.71 
 
 
640 aa  266  7e-70  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_008740  Maqu_3269  methyl-accepting chemotaxis sensory transducer  38.26 
 
 
605 aa  265  2e-69  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.000515244  n/a   
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  44.03 
 
 
564 aa  265  2e-69  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  32.68 
 
 
540 aa  265  2e-69  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  44.44 
 
 
541 aa  264  3e-69  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  44 
 
 
629 aa  264  3e-69  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  45.74 
 
 
674 aa  263  4.999999999999999e-69  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_004349  SO_A0106  methyl-accepting chemotaxis protein  44.03 
 
 
546 aa  263  6e-69  Shewanella oneidensis MR-1  Bacteria  normal  0.827543  n/a   
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  45.87 
 
 
541 aa  263  6.999999999999999e-69  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3424  methyl-accepting chemotaxis sensory transducer  44.25 
 
 
674 aa  263  8.999999999999999e-69  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.560716  n/a   
 
 
-
 
NC_011138  MADE_01731  Methyl-accepting chemotaxis protein  45.17 
 
 
539 aa  261  2e-68  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0081  putative methyl-accepting chemotaxis sensory transducer  46.05 
 
 
544 aa  261  2e-68  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0563  methyl-accepting chemotaxis sensory transducer  45.99 
 
 
633 aa  261  3e-68  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_3864  methyl-accepting chemotaxis protein  44.48 
 
 
568 aa  261  3e-68  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0567  methyl-accepting chemotaxis sensory transducer  45.99 
 
 
633 aa  260  4e-68  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  44.29 
 
 
548 aa  259  7e-68  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_009665  Shew185_0539  methyl-accepting chemotaxis sensory transducer  49.46 
 
 
633 aa  259  7e-68  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0633  methyl-accepting chemotaxis sensory transducer  44.42 
 
 
552 aa  258  2e-67  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  42.9 
 
 
620 aa  258  2e-67  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
NC_008739  Maqu_3979  methyl-accepting chemotaxis sensory transducer  44.42 
 
 
552 aa  258  2e-67  Marinobacter aquaeolei VT8  Bacteria  normal  0.594367  n/a   
 
 
-
 
NC_008789  Hhal_0549  methyl-accepting chemotaxis sensory transducer  44.75 
 
 
640 aa  258  3e-67  Halorhodospira halophila SL1  Bacteria  normal  0.43692  n/a   
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  47.46 
 
 
572 aa  257  4e-67  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  43.87 
 
 
633 aa  256  5e-67  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  46.26 
 
 
638 aa  256  6e-67  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_008228  Patl_0143  methyl-accepting chemotaxis sensory transducer  47.23 
 
 
539 aa  256  8e-67  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4022  chemotaxis sensory transducer  40.52 
 
 
493 aa  256  9e-67  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0732  methyl-accepting chemotaxis sensory transducer  47.9 
 
 
555 aa  255  1.0000000000000001e-66  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.177926 
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  43.84 
 
 
541 aa  255  1.0000000000000001e-66  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
NC_009512  Pput_1257  methyl-accepting chemotaxis sensory transducer  45.56 
 
 
688 aa  255  1.0000000000000001e-66  Pseudomonas putida F1  Bacteria  normal  0.124474  normal 
 
 
-
 
NC_009457  VC0395_A0908  methyl-accepting chemotaxis protein  47.12 
 
 
633 aa  255  2.0000000000000002e-66  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000172893  n/a   
 
 
-
 
NC_009997  Sbal195_3742  methyl-accepting chemotaxis sensory transducer  43.35 
 
 
620 aa  255  2.0000000000000002e-66  Shewanella baltica OS195  Bacteria  normal  normal  0.35347 
 
 
-
 
NC_009831  Ssed_1007  methyl-accepting chemotaxis sensory transducer  43.14 
 
 
573 aa  254  2.0000000000000002e-66  Shewanella sediminis HAW-EB3  Bacteria  normal  0.02936  normal 
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  33.99 
 
 
545 aa  255  2.0000000000000002e-66  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_009665  Shew185_3619  methyl-accepting chemotaxis sensory transducer  43.62 
 
 
620 aa  254  2.0000000000000002e-66  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  42.62 
 
 
559 aa  254  3e-66  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  43.08 
 
 
639 aa  254  3e-66  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  48 
 
 
647 aa  254  4.0000000000000004e-66  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0691  methyl-accepting chemotaxis sensory transducer  43.35 
 
 
620 aa  253  5.000000000000001e-66  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3551  methyl-accepting chemotaxis sensory transducer  43.35 
 
 
620 aa  253  5.000000000000001e-66  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00183884 
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  45.22 
 
 
650 aa  253  5.000000000000001e-66  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_010322  PputGB1_4190  methyl-accepting chemotaxis sensory transducer  44.99 
 
 
688 aa  253  6e-66  Pseudomonas putida GB-1  Bacteria  normal  0.251316  normal 
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  43.66 
 
 
638 aa  253  7e-66  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  49.19 
 
 
646 aa  253  7e-66  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_002947  PP_1228  methyl-accepting chemotaxis transducer  45.27 
 
 
688 aa  252  1e-65  Pseudomonas putida KT2440  Bacteria  normal  normal  0.739741 
 
 
-
 
NC_008740  Maqu_2789  methyl-accepting chemotaxis sensory transducer  44.08 
 
 
545 aa  252  1e-65  Marinobacter aquaeolei VT8  Bacteria  normal  0.888266  n/a   
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  47.42 
 
 
638 aa  252  1e-65  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  37.61 
 
 
627 aa  252  1e-65  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  41.73 
 
 
634 aa  251  2e-65  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3984  methyl-accepting chemotaxis sensory transducer  45.56 
 
 
688 aa  251  3e-65  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1124  methyl-accepting chemotaxis sensory transducer  44.92 
 
 
547 aa  250  4e-65  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00163985  n/a   
 
 
-
 
NC_007520  Tcr_1999  methyl-accepting chemotaxis sensory transducer  42.78 
 
 
405 aa  250  5e-65  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4874  chemotactic transducer PctC  36.92 
 
 
632 aa  250  6e-65  Pseudomonas aeruginosa PA7  Bacteria  normal  0.153332  n/a   
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  43.59 
 
 
619 aa  250  6e-65  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  45.56 
 
 
638 aa  249  7e-65  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_007954  Sden_1091  chemotaxis sensory transducer  42.94 
 
 
620 aa  249  1e-64  Shewanella denitrificans OS217  Bacteria  normal  0.0174472  n/a   
 
 
-
 
NC_008345  Sfri_0847  methyl-accepting chemotaxis sensory transducer  44.13 
 
 
620 aa  248  1e-64  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.566037  n/a   
 
 
-
 
NC_008345  Sfri_0861  methyl-accepting chemotaxis sensory transducer  42.9 
 
 
542 aa  249  1e-64  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5811  putative chemotaxis transducer  48.33 
 
 
647 aa  248  2e-64  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001423  methyl-accepting chemotaxis protein  42.03 
 
 
623 aa  247  4.9999999999999997e-64  Vibrio sp. Ex25  Bacteria  normal  0.896179  n/a   
 
 
-
 
NC_008463  PA14_55960  chemotactic transducer PctC  40.82 
 
 
632 aa  247  4.9999999999999997e-64  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.289325  normal 
 
 
-
 
NC_009784  VIBHAR_06314  histidine kinase  41.21 
 
 
623 aa  246  6e-64  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_1006  methyl-accepting chemotaxis sensory transducer  45.19 
 
 
573 aa  246  6e-64  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  41.46 
 
 
630 aa  246  6.999999999999999e-64  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_009439  Pmen_1998  methyl-accepting chemotaxis sensory transducer  46.29 
 
 
714 aa  246  6.999999999999999e-64  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0164438 
 
 
-
 
NC_010501  PputW619_0425  methyl-accepting chemotaxis sensory transducer with Cache sensor  40.65 
 
 
630 aa  246  8e-64  Pseudomonas putida W619  Bacteria  normal  0.461628  normal 
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  41.46 
 
 
630 aa  246  8e-64  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0876  methyl-accepting chemotaxis sensory transducer  40.57 
 
 
674 aa  246  8e-64  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  41.46 
 
 
630 aa  246  9e-64  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  41.46 
 
 
630 aa  246  9e-64  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
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