More than 300 homologs were found in PanDaTox collection
for query gene Ssed_4067 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_4067  two component LuxR family transcriptional regulator  100 
 
 
209 aa  431  1e-120  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0609  two component LuxR family transcriptional regulator  71.13 
 
 
199 aa  290  1e-77  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3862  response regulator receiver protein  71.35 
 
 
200 aa  288  3e-77  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0436  two component LuxR family transcriptional regulator  70.83 
 
 
202 aa  288  4e-77  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0478  two component transcriptional regulator, LuxR family  71.35 
 
 
200 aa  287  7e-77  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0451  response regulator receiver protein  71.35 
 
 
200 aa  287  8e-77  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0534  response regulator receiver protein  71.88 
 
 
200 aa  287  9e-77  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3697  two component LuxR family transcriptional regulator  70.31 
 
 
201 aa  287  1e-76  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0467  two component LuxR family transcriptional regulator  71.35 
 
 
200 aa  286  2e-76  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4157  DNA-binding response regulator  69.79 
 
 
202 aa  282  3.0000000000000004e-75  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_3517  two component LuxR family transcriptional regulator  69.27 
 
 
201 aa  280  1e-74  Shewanella sp. MR-4  Bacteria  normal  0.751217  normal 
 
 
-
 
NC_008345  Sfri_1997  two component transcriptional regulator, LuxR family protein  62.03 
 
 
197 aa  256  1e-67  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.333764  n/a   
 
 
-
 
NC_008700  Sama_3183  response regulator receiver protein  60.43 
 
 
191 aa  233  2.0000000000000002e-60  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3041  two component LuxR family transcriptional regulator  53.93 
 
 
203 aa  206  3e-52  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02672  hypothetical protein  51.87 
 
 
198 aa  204  1e-51  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003036  tetrathionate reductase two-component response regulator  46.24 
 
 
200 aa  187  1e-46  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0637  two component LuxR family transcriptional regulator  41.8 
 
 
203 aa  181  8.000000000000001e-45  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.0000059529 
 
 
-
 
NC_009438  Sputcn32_0666  response regulator receiver protein  42.7 
 
 
203 aa  177  1e-43  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3732  response regulator receiver protein  42.7 
 
 
206 aa  176  2e-43  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3858  two component LuxR family transcriptional regulator  41.8 
 
 
206 aa  176  3e-43  Shewanella baltica OS195  Bacteria  normal  normal  0.0335499 
 
 
-
 
NC_008321  Shewmr4_0637  two component LuxR family transcriptional regulator  41.27 
 
 
203 aa  175  4e-43  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.0000207768 
 
 
-
 
NC_011663  Sbal223_3675  two component transcriptional regulator, LuxR family  41.8 
 
 
206 aa  174  8e-43  Shewanella baltica OS223  Bacteria  normal  0.241682  normal 
 
 
-
 
NC_009052  Sbal_0593  response regulator receiver protein  42.16 
 
 
206 aa  174  9e-43  Shewanella baltica OS155  Bacteria  normal  0.858162  n/a   
 
 
-
 
NC_011094  SeSA_A1484  response regulator  39.69 
 
 
212 aa  165  2.9999999999999998e-40  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.923295  normal  0.335248 
 
 
-
 
NC_011080  SNSL254_A1500  response regulator  39.69 
 
 
212 aa  166  2.9999999999999998e-40  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  hitchhiker  0.0000000401264 
 
 
-
 
NC_011083  SeHA_C1521  response regulator  39.69 
 
 
212 aa  166  2.9999999999999998e-40  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.000410508 
 
 
-
 
NC_011149  SeAg_B1784  response regulator  39.69 
 
 
206 aa  165  4e-40  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1955  response regulator  39.69 
 
 
206 aa  165  4e-40  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.00159918 
 
 
-
 
NC_007298  Daro_3108  LuxR response regulator receiver  41.33 
 
 
202 aa  164  1.0000000000000001e-39  Dechloromonas aromatica RCB  Bacteria  normal  0.786061  normal 
 
 
-
 
NC_009832  Spro_1065  two component LuxR family transcriptional regulator  39.34 
 
 
206 aa  160  1e-38  Serratia proteamaculans 568  Bacteria  normal  hitchhiker  0.00175211 
 
 
-
 
NC_008228  Patl_2096  two component LuxR family transcriptional regulator  42.41 
 
 
212 aa  158  6e-38  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1779  response regulator receiver protein  40.59 
 
 
208 aa  156  2e-37  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.264941  hitchhiker  0.00228897 
 
 
-
 
NC_011662  Tmz1t_3192  two component transcriptional regulator, LuxR family  39.47 
 
 
212 aa  154  1e-36  Thauera sp. MZ1T  Bacteria  normal  0.513085  n/a   
 
 
-
 
NC_007973  Rmet_1194  two component LuxR family transcriptional regulator  39.58 
 
 
210 aa  154  1e-36  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00813352  normal  0.892025 
 
 
-
 
NC_008752  Aave_2460  two component LuxR family transcriptional regulator  40.31 
 
 
208 aa  153  2e-36  Acidovorax citrulli AAC00-1  Bacteria  normal  0.293905  normal 
 
 
-
 
NC_007908  Rfer_2210  two component LuxR family transcriptional regulator  40.1 
 
 
208 aa  153  2e-36  Rhodoferax ferrireducens T118  Bacteria  normal  0.891166  n/a   
 
 
-
 
NC_007347  Reut_A1301  LuxR response regulator receiver  39.11 
 
 
210 aa  152  2.9999999999999998e-36  Ralstonia eutropha JMP134  Bacteria  normal  0.549132  n/a   
 
 
-
 
NC_007298  Daro_2996  LuxR response regulator receiver  42.71 
 
 
198 aa  152  4e-36  Dechloromonas aromatica RCB  Bacteria  normal  0.437807  normal 
 
 
-
 
NC_009901  Spea_2088  two component LuxR family transcriptional regulator  42.02 
 
 
199 aa  152  4e-36  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2160  two component transcriptional regulator, LuxR family  39.59 
 
 
210 aa  152  4e-36  Variovorax paradoxus S110  Bacteria  normal  0.563306  n/a   
 
 
-
 
NC_008782  Ajs_2127  two component LuxR family transcriptional regulator  39.09 
 
 
208 aa  151  8e-36  Acidovorax sp. JS42  Bacteria  normal  0.583598  normal  0.797665 
 
 
-
 
NC_011992  Dtpsy_1655  two component transcriptional regulator, LuxR family  39.09 
 
 
208 aa  151  8e-36  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3982  two component LuxR family transcriptional regulator  38.58 
 
 
216 aa  150  1e-35  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0179399 
 
 
-
 
NC_010551  BamMC406_2049  two component LuxR family transcriptional regulator  40.51 
 
 
212 aa  150  2e-35  Burkholderia ambifaria MC40-6  Bacteria  normal  0.435361  normal 
 
 
-
 
NC_007510  Bcep18194_A5445  two component LuxR family transcriptional regulator  40.51 
 
 
212 aa  150  2e-35  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_1131  two component LuxR family transcriptional regulator  40.51 
 
 
212 aa  149  2e-35  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0589444  normal  0.612677 
 
 
-
 
NC_007651  BTH_I1862  LuxR family DNA-binding response regulator  40.51 
 
 
212 aa  149  2e-35  Burkholderia thailandensis E264  Bacteria  normal  0.340696  n/a   
 
 
-
 
NC_010508  Bcenmc03_2157  two component LuxR family transcriptional regulator  40.51 
 
 
212 aa  150  2e-35  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2674  two component LuxR family transcriptional regulator  38.12 
 
 
208 aa  150  2e-35  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_2176  two component LuxR family transcriptional regulator  40.51 
 
 
212 aa  150  2e-35  Burkholderia ambifaria AMMD  Bacteria  normal  0.116055  n/a   
 
 
-
 
NC_008542  Bcen2424_2139  two component LuxR family transcriptional regulator  40.51 
 
 
212 aa  150  2e-35  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2130  two component LuxR family transcriptional regulator  39.09 
 
 
207 aa  149  3e-35  Methylibium petroleiphilum PM1  Bacteria  normal  0.281977  normal 
 
 
-
 
NC_008786  Veis_1921  response regulator receiver protein  39.09 
 
 
208 aa  149  3e-35  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.287441  normal  0.0849999 
 
 
-
 
NC_008062  Bcen_5938  two component LuxR family transcriptional regulator  40 
 
 
212 aa  148  5e-35  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.172889  n/a   
 
 
-
 
NC_007964  Nham_1906  response regulator FixJ  40.31 
 
 
205 aa  148  6e-35  Nitrobacter hamburgensis X14  Bacteria  normal  0.700153  n/a   
 
 
-
 
NC_006348  BMA1723  LuxR family DNA-binding response regulator  40 
 
 
212 aa  148  7e-35  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0901353  n/a   
 
 
-
 
NC_009076  BURPS1106A_2670  LuxR family DNA-binding response regulator  40 
 
 
212 aa  148  7e-35  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2748  LuxR family DNA-binding response regulator  40 
 
 
212 aa  148  7e-35  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2232  LuxR family DNA-binding response regulator  40 
 
 
212 aa  148  7e-35  Burkholderia mallei SAVP1  Bacteria  normal  0.97455  n/a   
 
 
-
 
NC_009074  BURPS668_2614  LuxR family DNA-binding response regulator  40 
 
 
212 aa  148  7e-35  Burkholderia pseudomallei 668  Bacteria  normal  0.37823  n/a   
 
 
-
 
NC_008836  BMA10229_A3087  LuxR family DNA-binding response regulator  40 
 
 
212 aa  148  7e-35  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1505  LuxR family DNA-binding response regulator  40 
 
 
212 aa  148  7e-35  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1597  response regulator transcription regulator protein  39.39 
 
 
210 aa  147  8e-35  Ralstonia solanacearum GMI1000  Bacteria  normal  0.395881  normal 
 
 
-
 
NC_010622  Bphy_0645  two component LuxR family transcriptional regulator  39.59 
 
 
240 aa  147  9e-35  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0582  two component LuxR family transcriptional regulator  39.29 
 
 
206 aa  147  1.0000000000000001e-34  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.812865 
 
 
-
 
NC_010524  Lcho_1644  two component LuxR family transcriptional regulator  37.93 
 
 
207 aa  146  2.0000000000000003e-34  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0578076 
 
 
-
 
NC_009092  Shew_1969  two component LuxR family transcriptional regulator  45.5 
 
 
199 aa  145  5e-34  Shewanella loihica PV-4  Bacteria  normal  normal  0.0986563 
 
 
-
 
NC_010681  Bphyt_2593  two component transcriptional regulator, LuxR family  38.97 
 
 
214 aa  145  5e-34  Burkholderia phytofirmans PsJN  Bacteria  normal  0.382122  hitchhiker  0.00235574 
 
 
-
 
NC_009511  Swit_0268  two component LuxR family transcriptional regulator  41.54 
 
 
203 aa  145  5e-34  Sphingomonas wittichii RW1  Bacteria  normal  0.0126561  normal  0.200699 
 
 
-
 
NC_008700  Sama_2399  response regulator receiver protein  40.96 
 
 
201 aa  145  6e-34  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.635003 
 
 
-
 
NC_010505  Mrad2831_0400  two component LuxR family transcriptional regulator  37.37 
 
 
202 aa  145  6e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.331086  normal 
 
 
-
 
NC_010622  Bphy_1472  two component LuxR family transcriptional regulator  38.97 
 
 
214 aa  144  7.0000000000000006e-34  Burkholderia phymatum STM815  Bacteria  normal  normal  0.781461 
 
 
-
 
NC_009831  Ssed_2282  two component LuxR family transcriptional regulator  41.49 
 
 
199 aa  144  9e-34  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.203996 
 
 
-
 
NC_009512  Pput_2871  response regulator receiver protein  38.54 
 
 
206 aa  144  1e-33  Pseudomonas putida F1  Bacteria  normal  0.313361  normal  0.346414 
 
 
-
 
NC_007406  Nwi_1028  response regulator FixJ  38.22 
 
 
205 aa  144  1e-33  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0943  two component LuxR family transcriptional regulator  37.31 
 
 
214 aa  144  1e-33  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1539  two component LuxR family transcriptional regulator  38.97 
 
 
214 aa  144  1e-33  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.274992 
 
 
-
 
NC_009428  Rsph17025_0245  response regulator receiver protein  38.3 
 
 
202 aa  142  2e-33  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2567  response regulator receiver protein  38.3 
 
 
202 aa  142  2e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.94208 
 
 
-
 
NC_007493  RSP_0907  two component LuxR family transcriptional regulator  38.3 
 
 
202 aa  142  2e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.285724  n/a   
 
 
-
 
NC_008309  HS_0901  two component response regulator  40.83 
 
 
196 aa  142  3e-33  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0686  two component LuxR family transcriptional regulator  36.14 
 
 
203 aa  142  5e-33  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1743  two component LuxR family transcriptional regulator  37.56 
 
 
209 aa  141  5e-33  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.518394 
 
 
-
 
NC_012856  Rpic12D_1621  two component transcriptional regulator, LuxR family  38.38 
 
 
211 aa  142  5e-33  Ralstonia pickettii 12D  Bacteria  normal  0.171805  normal 
 
 
-
 
NC_009379  Pnuc_0732  response regulator receiver protein  38.46 
 
 
215 aa  142  5e-33  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.298469  n/a   
 
 
-
 
NC_007964  Nham_0872  two component LuxR family transcriptional regulator  36.23 
 
 
210 aa  141  9e-33  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1416  DNA-binding response regulator  42.86 
 
 
199 aa  140  9.999999999999999e-33  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_3240  two component LuxR family transcriptional regulator  40.43 
 
 
207 aa  139  1.9999999999999998e-32  Shewanella loihica PV-4  Bacteria  normal  normal  0.989265 
 
 
-
 
NC_010682  Rpic_1949  two component transcriptional regulator, LuxR family  37.88 
 
 
211 aa  140  1.9999999999999998e-32  Ralstonia pickettii 12J  Bacteria  normal  0.24135  normal  0.0521212 
 
 
-
 
NC_010322  PputGB1_2371  two component LuxR family transcriptional regulator  35.83 
 
 
209 aa  139  3.9999999999999997e-32  Pseudomonas putida GB-1  Bacteria  normal  0.820742  normal 
 
 
-
 
NC_009719  Plav_2041  response regulator receiver protein  34.55 
 
 
214 aa  138  6e-32  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.212509  hitchhiker  0.00400016 
 
 
-
 
NC_007958  RPD_1499  LuxR family two component transcriptional regulator  38.02 
 
 
209 aa  137  8.999999999999999e-32  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2117  response regulator FixJ  35.6 
 
 
205 aa  137  8.999999999999999e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0630  response regulator FixJ  36.27 
 
 
204 aa  137  1e-31  Caulobacter sp. K31  Bacteria  normal  0.136769  normal  0.239148 
 
 
-
 
NC_011004  Rpal_1519  two component transcriptional regulator, LuxR family  36.65 
 
 
228 aa  136  2e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.444774  n/a   
 
 
-
 
NC_010086  Bmul_5088  two component LuxR family transcriptional regulator  37.06 
 
 
241 aa  135  3.0000000000000003e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.685625 
 
 
-
 
NC_007511  Bcep18194_B2505  two component LuxR family transcriptional regulator  38.1 
 
 
210 aa  135  3.0000000000000003e-31  Burkholderia sp. 383  Bacteria  normal  0.382458  normal  0.897172 
 
 
-
 
NC_010515  Bcenmc03_3910  two component LuxR family transcriptional regulator  38.1 
 
 
210 aa  135  3.0000000000000003e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.855973 
 
 
-
 
NC_008543  Bcen2424_3610  two component LuxR family transcriptional regulator  38.1 
 
 
210 aa  135  3.0000000000000003e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  0.603365  normal 
 
 
-
 
NC_012791  Vapar_5156  two component transcriptional regulator, LuxR family  38.97 
 
 
208 aa  135  4e-31  Variovorax paradoxus S110  Bacteria  normal  0.497351  n/a   
 
 
-
 
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