More than 300 homologs were found in PanDaTox collection
for query gene Ssed_3719 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_3719  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
499 aa  1019    Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.540881 
 
 
-
 
NC_004347  SO_3689  sigma-54 dependent nitrogen response regulator  69.44 
 
 
475 aa  695    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1034  two component, sigma54 specific, Fis family transcriptional regulator  67.77 
 
 
503 aa  684    Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1001  two component, sigma54 specific, Fis family transcriptional regulator  68.05 
 
 
502 aa  677    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1022  two component, sigma54 specific, transcriptional regulator, Fis family  67.57 
 
 
502 aa  686    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2861  response regulator receiver protein  64.2 
 
 
504 aa  635    Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4069  two component, sigma54 specific, Fis family transcriptional regulator  76.05 
 
 
485 aa  765    Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3338  two component, sigma54 specific, Fis family transcriptional regulator  68.85 
 
 
493 aa  684    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0726  two component, sigma54 specific, Fis family transcriptional regulator  73.2 
 
 
494 aa  728    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2847  sigma-54 factor, interaction region  68.88 
 
 
496 aa  687    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0866  two component, sigma54 specific, Fis family transcriptional regulator  69.05 
 
 
484 aa  699    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3361  two component, sigma54 specific, Fis family transcriptional regulator  72.15 
 
 
509 aa  745    Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_3156  two component, sigma54 specific, Fis family transcriptional regulator  69.46 
 
 
484 aa  699    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0901  two component, sigma54 specific, transcriptional regulator, Fis family protein  68.34 
 
 
482 aa  697    Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.520731  n/a   
 
 
-
 
NC_008577  Shewana3_3257  two component, sigma54 specific, Fis family transcriptional regulator  69.54 
 
 
478 aa  699    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_3505  two component, sigma54 specific, transcriptional regulator, Fis family  49.6 
 
 
448 aa  449  1e-125  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.391305  normal  0.450038 
 
 
-
 
NC_003910  CPS_0576  sigma-54 dependent DNA-binding response regulator  50.8 
 
 
435 aa  446  1.0000000000000001e-124  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1904  two component, sigma54 specific, Fis family transcriptional regulator  38.84 
 
 
456 aa  348  2e-94  Opitutus terrae PB90-1  Bacteria  normal  normal  0.865916 
 
 
-
 
NC_008009  Acid345_0374  two component, sigma54 specific, Fis family transcriptional regulator  39.64 
 
 
471 aa  343  2.9999999999999997e-93  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.774685 
 
 
-
 
NC_003910  CPS_2121  sigma-54 dependent DNA-binding response regulator  38.78 
 
 
465 aa  321  1.9999999999999998e-86  Colwellia psychrerythraea 34H  Bacteria  normal  0.798408  n/a   
 
 
-
 
NC_007912  Sde_0306  two component, sigma54 specific, Fis family transcriptional regulator  41.71 
 
 
457 aa  321  1.9999999999999998e-86  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0689092 
 
 
-
 
NC_003910  CPS_0778  sigma-54 dependent DNA-binding response regulator  36.24 
 
 
461 aa  320  3.9999999999999996e-86  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0082  two component, sigma54 specific, transcriptional regulator, Fis family  36.74 
 
 
466 aa  317  4e-85  Dickeya zeae Ech1591  Bacteria  normal  0.728671  n/a   
 
 
-
 
NC_002950  PG0747  sigma-54 dependent DNA-binding response regulator  37.62 
 
 
464 aa  316  7e-85  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_012880  Dd703_0097  two component, sigma54 specific, transcriptional regulator, Fis family  35.91 
 
 
466 aa  311  1e-83  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4418  sigma-54 dependent DNA-binding response regulator  39.8 
 
 
450 aa  311  2e-83  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0853  two component, sigma54 specific, Fis family transcriptional regulator  44.92 
 
 
502 aa  308  1.0000000000000001e-82  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  38.61 
 
 
470 aa  307  2.0000000000000002e-82  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_009441  Fjoh_1332  two component, sigma54 specific, Fis family transcriptional regulator  35.06 
 
 
447 aa  307  3e-82  Flavobacterium johnsoniae UW101  Bacteria  normal  0.311048  n/a   
 
 
-
 
NC_013037  Dfer_5614  two component, sigma54 specific, transcriptional regulator, Fis family  36.9 
 
 
457 aa  306  6e-82  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  38.37 
 
 
460 aa  304  2.0000000000000002e-81  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  42.39 
 
 
452 aa  303  4.0000000000000003e-81  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2539  two component, sigma54 specific, Fis family transcriptional regulator  37.43 
 
 
487 aa  301  2e-80  Maricaulis maris MCS10  Bacteria  normal  0.846517  normal 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  42.04 
 
 
451 aa  298  2e-79  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4704  sigma-54 dependent DNA-binding response regulator  37.01 
 
 
483 aa  298  2e-79  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0259  two component signal transduction response regulator  37 
 
 
513 aa  298  2e-79  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0470  two component, sigma54 specific, Fis family transcriptional regulator  35.91 
 
 
449 aa  296  4e-79  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0953  two component, sigma54 specific, transcriptional regulator, Fis family  36.63 
 
 
450 aa  295  1e-78  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.283523  normal 
 
 
-
 
NC_013730  Slin_2347  two component, sigma54 specific, transcriptional regulator, Fis family  35.84 
 
 
456 aa  295  1e-78  Spirosoma linguale DSM 74  Bacteria  normal  0.229216  normal 
 
 
-
 
NC_013730  Slin_4586  two component, sigma54 specific, transcriptional regulator, Fis family  36.81 
 
 
456 aa  295  2e-78  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00347472  normal 
 
 
-
 
NC_011146  Gbem_1988  two component, sigma54 specific, transcriptional regulator, Fis family  37.89 
 
 
509 aa  294  2e-78  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  36.51 
 
 
459 aa  294  2e-78  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  40.65 
 
 
452 aa  293  7e-78  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  42.19 
 
 
457 aa  292  1e-77  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2232  two component, sigma54 specific, transcriptional regulator, Fis family  37.33 
 
 
509 aa  291  1e-77  Geobacter sp. M21  Bacteria  n/a    normal  0.0243568 
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  38.28 
 
 
448 aa  292  1e-77  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  36.49 
 
 
454 aa  291  2e-77  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  36.9 
 
 
453 aa  290  3e-77  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2387  two component, sigma-54 specific, Fis family transcriptional regulator  36.77 
 
 
510 aa  291  3e-77  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  36.42 
 
 
463 aa  290  4e-77  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  36.38 
 
 
452 aa  289  7e-77  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_013440  Hoch_2606  two component, sigma54 specific, transcriptional regulator, Fis family  41.13 
 
 
501 aa  288  1e-76  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.955687 
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  40.56 
 
 
470 aa  288  2e-76  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  36.8 
 
 
454 aa  286  4e-76  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  36.69 
 
 
470 aa  286  7e-76  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_013037  Dfer_4836  two component, sigma54 specific, transcriptional regulator, Fis family  34.86 
 
 
456 aa  285  1.0000000000000001e-75  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_3335  two component, sigma-54 specific, Fis family transcriptional regulator  34.72 
 
 
458 aa  285  1.0000000000000001e-75  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  36.29 
 
 
455 aa  284  2.0000000000000002e-75  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_013525  Tter_0790  two component, sigma54 specific, transcriptional regulator, Fis family  41.34 
 
 
466 aa  284  2.0000000000000002e-75  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013216  Dtox_0970  two component, sigma54 specific, transcriptional regulator, Fis family  33.86 
 
 
459 aa  285  2.0000000000000002e-75  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000694494  normal  0.524712 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  41.46 
 
 
470 aa  283  3.0000000000000004e-75  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_007519  Dde_0109  two component Fis family transcriptional regulator  37.3 
 
 
466 aa  284  3.0000000000000004e-75  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG0016  sigma-54 dependent DNA-binding response regulator  37.38 
 
 
449 aa  283  4.0000000000000003e-75  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.420092 
 
 
-
 
NC_010814  Glov_2633  two component, sigma54 specific, transcriptional regulator, Fis family  33.93 
 
 
467 aa  283  4.0000000000000003e-75  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  41.4 
 
 
473 aa  283  5.000000000000001e-75  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  36.25 
 
 
453 aa  283  6.000000000000001e-75  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  36.69 
 
 
473 aa  283  6.000000000000001e-75  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3375  two-component response regulator CbrB  35.88 
 
 
472 aa  282  8.000000000000001e-75  Saccharophagus degradans 2-40  Bacteria  normal  0.0307811  normal  0.146362 
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  37.4 
 
 
448 aa  282  8.000000000000001e-75  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  35.9 
 
 
473 aa  281  2e-74  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  36.58 
 
 
457 aa  281  2e-74  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007912  Sde_0327  response regulator receiver domain-containing protein  34.71 
 
 
503 aa  281  2e-74  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.348784 
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  35.9 
 
 
473 aa  281  2e-74  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  41.73 
 
 
458 aa  280  3e-74  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_008554  Sfum_3268  two component, sigma54 specific, Fis family transcriptional regulator  37.03 
 
 
483 aa  281  3e-74  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.474695  normal 
 
 
-
 
NC_009483  Gura_0085  two component, sigma-54 specific, Fis family transcriptional regulator  35.54 
 
 
452 aa  280  4e-74  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3419  two component, sigma54 specific, transcriptional regulator, Fis family  35.38 
 
 
455 aa  280  4e-74  Anaeromyxobacter sp. K  Bacteria  normal  0.683267  n/a   
 
 
-
 
NC_008609  Ppro_1179  two component, sigma54 specific, Fis family transcriptional regulator  40.66 
 
 
457 aa  280  5e-74  Pelobacter propionicus DSM 2379  Bacteria  normal  0.655382  n/a   
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  34.66 
 
 
480 aa  279  7e-74  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  36.51 
 
 
458 aa  279  8e-74  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008607  Ppro_3647  two component, sigma54 specific, Fis family transcriptional regulator  39.79 
 
 
451 aa  279  8e-74  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  34.74 
 
 
460 aa  278  1e-73  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1989  sigma-54 dependent DNA-binding response regulator  35.33 
 
 
444 aa  279  1e-73  Geobacter sulfurreducens PCA  Bacteria  normal  0.519588  n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  41.73 
 
 
471 aa  278  1e-73  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  35.56 
 
 
466 aa  278  1e-73  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_009719  Plav_2050  two component, sigma54 specific, Fis family transcriptional regulator  33.98 
 
 
511 aa  279  1e-73  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.155124  hitchhiker  0.000156568 
 
 
-
 
NC_009636  Smed_2683  two component, sigma54 specific, Fis family transcriptional regulator  35.73 
 
 
549 aa  278  2e-73  Sinorhizobium medicae WSM419  Bacteria  normal  0.272019  normal  0.67062 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  41.35 
 
 
471 aa  278  2e-73  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_008751  Dvul_0168  two component, sigma54 specific, Fis family transcriptional regulator  40.05 
 
 
459 aa  278  2e-73  Desulfovibrio vulgaris DP4  Bacteria  normal  0.564625  normal  0.730975 
 
 
-
 
NC_013440  Hoch_2510  two component, sigma54 specific, transcriptional regulator, Fis family  35.19 
 
 
472 aa  278  2e-73  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0791346  normal 
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  35.66 
 
 
457 aa  278  2e-73  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3356  two component, sigma54 specific, Fis family transcriptional regulator  38.81 
 
 
484 aa  278  2e-73  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0823  two component, sigma54 specific, transcriptional regulator, Fis family  40.79 
 
 
456 aa  278  2e-73  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.449732 
 
 
-
 
NC_011883  Ddes_0853  two component, sigma54 specific, transcriptional regulator, Fis family  40.15 
 
 
459 aa  278  2e-73  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0538681  n/a   
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  42.11 
 
 
453 aa  277  3e-73  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  36.13 
 
 
515 aa  276  4e-73  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  41.58 
 
 
457 aa  277  4e-73  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_009675  Anae109_0684  two component, sigma54 specific, Fis family transcriptional regulator  40.25 
 
 
456 aa  276  4e-73  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_3483  two component, sigma54 specific, transcriptional regulator, Fis family  35.18 
 
 
455 aa  277  4e-73  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0480061  n/a   
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  40 
 
 
462 aa  276  4e-73  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
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