More than 300 homologs were found in PanDaTox collection
for query gene Ssed_3236 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_3236  methyl-accepting chemotaxis protein  100 
 
 
544 aa  1096    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0210  methyl-accepting chemotaxis protein  43.17 
 
 
543 aa  417  9.999999999999999e-116  Vibrio cholerae O395  Bacteria  decreased coverage  0.000000000000824359  n/a   
 
 
-
 
NC_009457  VC0395_A0931  methyl-accepting chemotaxis protein  43.81 
 
 
543 aa  408  1.0000000000000001e-112  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003886  methyl-accepting chemotaxis protein  43.07 
 
 
542 aa  400  9.999999999999999e-111  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000055  methyl-accepting chemotaxis protein  41.96 
 
 
543 aa  391  1e-107  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000458726  n/a   
 
 
-
 
NC_004349  SO_A0106  methyl-accepting chemotaxis protein  38 
 
 
546 aa  323  5e-87  Shewanella oneidensis MR-1  Bacteria  normal  0.827543  n/a   
 
 
-
 
NC_007005  Psyr_4706  histidine kinase, HAMP region: chemotaxis sensory transducer  34.72 
 
 
541 aa  247  4e-64  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0466  methyl-accepting chemotaxis protein  34.6 
 
 
541 aa  246  8e-64  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  41.76 
 
 
633 aa  245  9.999999999999999e-64  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  40.5 
 
 
619 aa  246  9.999999999999999e-64  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  43.88 
 
 
681 aa  245  1.9999999999999999e-63  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  42.57 
 
 
640 aa  243  5e-63  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_007492  Pfl01_2907  chemotaxis sensory transducer  33.88 
 
 
541 aa  243  7e-63  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.300582 
 
 
-
 
NC_008463  PA14_43710  putative methyl-accepting chemotaxis transducer  33.7 
 
 
541 aa  242  1e-62  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4624  methyl-accepting chemotaxis protein  31.88 
 
 
539 aa  242  1e-62  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.140064  n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  38.95 
 
 
642 aa  242  1e-62  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_004578  PSPTO_3680  methyl-accepting chemotaxis protein  43.58 
 
 
676 aa  240  4e-62  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4541  methyl-accepting chemotaxis protein  34.04 
 
 
541 aa  239  5.999999999999999e-62  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.726322  n/a   
 
 
-
 
NC_007005  Psyr_1491  histidine kinase, HAMP region: chemotaxis sensory transducer  31.69 
 
 
539 aa  239  6.999999999999999e-62  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3666  chemotaxis transducer  33.39 
 
 
541 aa  239  1e-61  Pseudomonas aeruginosa PA7  Bacteria  normal  0.260935  n/a   
 
 
-
 
NC_009901  Spea_3266  methyl-accepting chemotaxis sensory transducer  33.47 
 
 
543 aa  239  1e-61  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2309  methyl-accepting chemotaxis protein-like protein  37.84 
 
 
547 aa  239  1e-61  Shewanella sediminis HAW-EB3  Bacteria  normal  0.037772  hitchhiker  0.0000415162 
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  45.24 
 
 
650 aa  238  2e-61  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_011901  Tgr7_1672  methyl-accepting chemotaxis sensory transducer  42.32 
 
 
544 aa  238  2e-61  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0868  histidine kinase, HAMP region: chemotaxis sensory transducer  33.16 
 
 
546 aa  237  4e-61  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.872643 
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  42.53 
 
 
642 aa  236  7e-61  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_011901  Tgr7_0712  putative methyl-accepting chemotaxis sensory transducer  44.04 
 
 
624 aa  235  2.0000000000000002e-60  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  43.54 
 
 
638 aa  234  2.0000000000000002e-60  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3114  histidine kinase, HAMP region: chemotaxis sensory transducer  32.05 
 
 
541 aa  235  2.0000000000000002e-60  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.860602  normal 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  42.11 
 
 
638 aa  234  2.0000000000000002e-60  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4218  histidine kinase, HAMP region: chemotaxis sensory transducer  32.5 
 
 
541 aa  233  5e-60  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.599163 
 
 
-
 
NC_007492  Pfl01_4833  chemotaxis sensory transducer  32.14 
 
 
541 aa  233  7.000000000000001e-60  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000956827  normal  0.082646 
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  41.79 
 
 
640 aa  233  1e-59  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  42.94 
 
 
638 aa  231  2e-59  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  41.97 
 
 
638 aa  232  2e-59  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_007492  Pfl01_0447  chemotaxis sensory transducer  32.43 
 
 
541 aa  229  8e-59  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  41.5 
 
 
629 aa  229  1e-58  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3279  methyl-accepting chemotaxis protein  31.76 
 
 
541 aa  229  1e-58  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.149652  n/a   
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  41.11 
 
 
773 aa  228  2e-58  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_007492  Pfl01_1630  chemotaxis sensory transducer  33.63 
 
 
541 aa  226  7e-58  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0250136 
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  43.48 
 
 
543 aa  226  1e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0732  methyl-accepting chemotaxis sensory transducer  38.93 
 
 
555 aa  224  3e-57  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.177926 
 
 
-
 
NC_004578  PSPTO_5569  methyl-accepting chemotaxis protein  31.35 
 
 
541 aa  224  3e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  38.31 
 
 
638 aa  222  9.999999999999999e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  35.87 
 
 
541 aa  223  9.999999999999999e-57  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  44.44 
 
 
637 aa  222  9.999999999999999e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_007492  Pfl01_4266  chemotaxis sensory transducer  35.15 
 
 
546 aa  222  9.999999999999999e-57  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.261421  normal 
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  43.18 
 
 
620 aa  221  1.9999999999999999e-56  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  42.01 
 
 
634 aa  221  1.9999999999999999e-56  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  44.64 
 
 
647 aa  221  1.9999999999999999e-56  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  40.06 
 
 
639 aa  221  1.9999999999999999e-56  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_004578  PSPTO_3577  methyl-accepting chemotaxis protein  32.91 
 
 
542 aa  221  3e-56  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3424  methyl-accepting chemotaxis sensory transducer  38.46 
 
 
674 aa  221  3e-56  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.560716  n/a   
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  34.78 
 
 
541 aa  220  3.9999999999999997e-56  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  36.68 
 
 
568 aa  219  8.999999999999998e-56  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0339  methyl-accepting chemotaxis sensory transducer  31.82 
 
 
541 aa  219  1e-55  Pseudomonas putida F1  Bacteria  normal  0.722367  normal 
 
 
-
 
NC_002947  PP_0317  methyl-accepting chemotaxis sensory transducer  31.82 
 
 
541 aa  218  2e-55  Pseudomonas putida KT2440  Bacteria  normal  0.365849  decreased coverage  0.0000342214 
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  39.14 
 
 
634 aa  218  2e-55  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  43.2 
 
 
636 aa  218  2e-55  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_009439  Pmen_2471  methyl-accepting chemotaxis sensory transducer  39.33 
 
 
425 aa  218  2e-55  Pseudomonas mendocina ymp  Bacteria  normal  0.817651  normal 
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  41.12 
 
 
716 aa  218  2.9999999999999998e-55  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  36.07 
 
 
638 aa  218  2.9999999999999998e-55  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_010501  PputW619_4890  methyl-accepting chemotaxis sensory transducer  31.21 
 
 
541 aa  216  5.9999999999999996e-55  Pseudomonas putida W619  Bacteria  normal  0.452969  normal  0.355365 
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  40.33 
 
 
621 aa  216  8e-55  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  38.38 
 
 
541 aa  216  9e-55  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_009654  Mmwyl1_3322  methyl-accepting chemotaxis sensory transducer  28.76 
 
 
539 aa  215  9.999999999999999e-55  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.910778 
 
 
-
 
NC_007005  Psyr_5092  histidine kinase, HAMP region: chemotaxis sensory transducer  41.19 
 
 
640 aa  216  9.999999999999999e-55  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  41.14 
 
 
634 aa  215  9.999999999999999e-55  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4653  methyl-accepting chemotaxis sensory transducer  42.6 
 
 
639 aa  215  9.999999999999999e-55  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  41.99 
 
 
674 aa  215  1.9999999999999998e-54  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  38.69 
 
 
541 aa  215  1.9999999999999998e-54  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1124  methyl-accepting chemotaxis sensory transducer  40.43 
 
 
547 aa  214  2.9999999999999995e-54  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00163985  n/a   
 
 
-
 
NC_010322  PputGB1_0340  methyl-accepting chemotaxis sensory transducer  39.88 
 
 
541 aa  214  2.9999999999999995e-54  Pseudomonas putida GB-1  Bacteria  normal  0.582352  normal 
 
 
-
 
NC_004578  PSPTO_5553  methyl-accepting chemotaxis protein  41.33 
 
 
640 aa  214  3.9999999999999995e-54  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  40.33 
 
 
634 aa  213  7e-54  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_0876  methyl-accepting chemotaxis sensory transducer  37.95 
 
 
674 aa  213  7.999999999999999e-54  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  35.7 
 
 
637 aa  213  9e-54  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_009512  Pput_4520  methyl-accepting chemotaxis sensory transducer  42.3 
 
 
639 aa  212  2e-53  Pseudomonas putida F1  Bacteria  normal  normal  0.886367 
 
 
-
 
NC_002947  PP_4658  methyl-accepting chemotaxis sensory transducer  42.3 
 
 
639 aa  211  2e-53  Pseudomonas putida KT2440  Bacteria  normal  0.415489  normal 
 
 
-
 
NC_009656  PSPA7_5811  putative chemotaxis transducer  45.24 
 
 
647 aa  211  2e-53  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2593  methyl-accepting chemotaxis sensory transducer  30.59 
 
 
540 aa  211  2e-53  Pseudomonas putida W619  Bacteria  normal  normal  0.591477 
 
 
-
 
NC_007005  Psyr_3348  histidine kinase, HAMP region: chemotaxis sensory transducer  33.09 
 
 
542 aa  211  2e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.946905  normal  0.024921 
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  41.18 
 
 
620 aa  211  2e-53  Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_004578  PSPTO_1334  methyl-accepting chemotaxis protein  31.45 
 
 
550 aa  211  3e-53  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0778  methyl-accepting chemotaxis sensory transducer  41.69 
 
 
639 aa  211  3e-53  Pseudomonas putida W619  Bacteria  normal  normal  0.66043 
 
 
-
 
NC_010322  PputGB1_2268  methyl-accepting chemotaxis sensory transducer  32.56 
 
 
541 aa  211  3e-53  Pseudomonas putida GB-1  Bacteria  normal  0.255239  normal 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  39.54 
 
 
712 aa  210  5e-53  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_007005  Psyr_1539  histidine kinase, HAMP region: chemotaxis sensory transducer  39.58 
 
 
626 aa  210  5e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.206608  normal  0.0710897 
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  33.64 
 
 
572 aa  210  6e-53  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1434  methyl-accepting chemotaxis protein  29.98 
 
 
543 aa  209  8e-53  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  41.03 
 
 
620 aa  209  8e-53  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  38.29 
 
 
653 aa  209  8e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_008739  Maqu_3979  methyl-accepting chemotaxis sensory transducer  31.14 
 
 
552 aa  209  9e-53  Marinobacter aquaeolei VT8  Bacteria  normal  0.594367  n/a   
 
 
-
 
NC_008740  Maqu_0633  methyl-accepting chemotaxis sensory transducer  31.14 
 
 
552 aa  209  9e-53  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2822  putative methyl-accepting chemotaxis sensory transducer  37.4 
 
 
673 aa  209  1e-52  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.428629 
 
 
-
 
NC_007005  Psyr_2634  histidine kinase, HAMP region: chemotaxis sensory transducer  32.21 
 
 
542 aa  209  1e-52  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.917034  normal 
 
 
-
 
NC_009439  Pmen_2451  methyl-accepting chemotaxis sensory transducer  44.07 
 
 
655 aa  209  1e-52  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.932747 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  39.26 
 
 
712 aa  208  2e-52  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_004578  PSPTO_5160  methyl-accepting chemotaxis protein  40.84 
 
 
647 aa  207  3e-52  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.391343  n/a   
 
 
-
 
NC_009052  Sbal_3441  methyl-accepting chemotaxis sensory transducer  38.66 
 
 
541 aa  207  3e-52  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
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