More than 300 homologs were found in PanDaTox collection
for query gene Ssed_2864 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_2864  two-component response regulator  100 
 
 
383 aa  785    Shewanella sediminis HAW-EB3  Bacteria  normal  0.384945  hitchhiker  0.000000030251 
 
 
-
 
NC_007298  Daro_3553  response regulator receiver  63.46 
 
 
384 aa  473  1e-132  Dechloromonas aromatica RCB  Bacteria  normal  0.739627  normal 
 
 
-
 
NC_008009  Acid345_4060  response regulator receiver modulated metal dependent phosphohydrolase  62.85 
 
 
365 aa  461  9.999999999999999e-129  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0748941 
 
 
-
 
NC_011769  DvMF_1097  response regulator receiver modulated metal dependent phosphohydrolase  62.57 
 
 
391 aa  454  1e-127  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.151318 
 
 
-
 
NC_008752  Aave_2064  response regulator receiver modulated metal dependent phosphohydrolase  62.57 
 
 
395 aa  454  1.0000000000000001e-126  Acidovorax citrulli AAC00-1  Bacteria  normal  0.18463  normal  0.544249 
 
 
-
 
NC_011992  Dtpsy_0962  response regulator receiver modulated metal dependent phosphohydrolase  60.37 
 
 
377 aa  451  1e-125  Acidovorax ebreus TPSY  Bacteria  normal  0.115091  n/a   
 
 
-
 
NC_008782  Ajs_1044  response regulator receiver modulated metal dependent phosphohydrolase  60.37 
 
 
377 aa  449  1e-125  Acidovorax sp. JS42  Bacteria  normal  normal  0.0516082 
 
 
-
 
NC_010506  Swoo_2978  response regulator receiver modulated metal dependent phosphohydrolase  57.26 
 
 
369 aa  442  1e-123  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.806511 
 
 
-
 
NC_007348  Reut_B4068  response regulator receiver  58.56 
 
 
377 aa  438  9.999999999999999e-123  Ralstonia eutropha JMP134  Bacteria  normal  0.706307  n/a   
 
 
-
 
NC_013512  Sdel_0912  metal-dependent phosphohydrolase HD sub domain protein  58.17 
 
 
371 aa  417  9.999999999999999e-116  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3005  response regulator receiver  55.99 
 
 
361 aa  409  1e-113  Dechloromonas aromatica RCB  Bacteria  normal  0.931132  normal 
 
 
-
 
NC_010524  Lcho_2589  response regulator receiver modulated metal dependent phosphohydrolase  53.72 
 
 
375 aa  396  1e-109  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0322399 
 
 
-
 
NC_008576  Mmc1_3072  response regulator receiver modulated metal dependent phosphohydrolase  54.57 
 
 
353 aa  396  1e-109  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000480818 
 
 
-
 
NC_013223  Dret_2370  response regulator receiver modulated metal dependent phosphohydrolase  53.72 
 
 
370 aa  393  1e-108  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2833  response regulator receiver modulated metal dependent phosphohydrolase  54.34 
 
 
360 aa  386  1e-106  Thauera sp. MZ1T  Bacteria  normal  0.809465  n/a   
 
 
-
 
NC_007519  Dde_1942  metal dependent phosphohydrolase  52.46 
 
 
363 aa  385  1e-106  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.284574  n/a   
 
 
-
 
NC_007298  Daro_3458  response regulator receiver  53.2 
 
 
365 aa  380  1e-104  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_1054  response regulator receiver modulated metal dependent phosphohydrolase  51.67 
 
 
359 aa  374  1e-102  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1463  response regulator receiver modulated metal dependent phosphohydrolase  52.76 
 
 
364 aa  374  1e-102  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.404054 
 
 
-
 
NC_009457  VC0395_A0963  response regulator  51.52 
 
 
441 aa  373  1e-102  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2452  response regulator receiver modulated metal dependent phosphohydrolase  50.97 
 
 
377 aa  358  6e-98  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00101758 
 
 
-
 
NC_009656  PSPA7_5503  response regulator receiver  51.24 
 
 
393 aa  358  9.999999999999999e-98  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_63210  putative two-component response regulator  51.52 
 
 
393 aa  355  8.999999999999999e-97  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2455  response regulator receiver modulated metal dependent phosphohydrolase  46.74 
 
 
376 aa  349  4e-95  Magnetococcus sp. MC-1  Bacteria  normal  0.46136  normal  0.292815 
 
 
-
 
NC_009654  Mmwyl1_0356  response regulator receiver modulated metal dependent phosphohydrolase  47.5 
 
 
360 aa  332  1e-89  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1904  response regulator receiver modulated metal dependent phosphohydrolase  46.43 
 
 
364 aa  328  7e-89  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.430639  normal  0.0105316 
 
 
-
 
NC_009439  Pmen_0836  response regulator receiver protein  47.75 
 
 
395 aa  327  3e-88  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3408  response regulator receiver modulated metal dependent phosphohydrolase  46.8 
 
 
346 aa  324  1e-87  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3549  response regulator receiver modulated metal dependent phosphohydrolase  45.81 
 
 
348 aa  322  6e-87  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0481  response regulator receiver modulated metal dependent phosphohydrolase  45.53 
 
 
348 aa  321  9.999999999999999e-87  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_013522  Taci_1373  response regulator receiver modulated metal dependent phosphohydrolase  45.98 
 
 
365 aa  316  4e-85  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0479  response regulator receiver modulated metal dependent phosphohydrolase  45.81 
 
 
350 aa  313  3.9999999999999997e-84  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_50640  response regulator with metal dependent phosphohydrolase activity (two-component)  46.11 
 
 
347 aa  308  2.0000000000000002e-82  Azotobacter vinelandii DJ  Bacteria  normal  0.121542  n/a   
 
 
-
 
NC_004347  SO_4003  response regulator  44.63 
 
 
357 aa  305  9.000000000000001e-82  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  46.11 
 
 
339 aa  305  1.0000000000000001e-81  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  45.51 
 
 
338 aa  305  1.0000000000000001e-81  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  45.51 
 
 
338 aa  304  2.0000000000000002e-81  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  45.51 
 
 
338 aa  304  2.0000000000000002e-81  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  45.79 
 
 
338 aa  303  4.0000000000000003e-81  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0860  response regulator  45.13 
 
 
339 aa  301  9e-81  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_0007  response regulator receiver modulated metal dependent phosphohydrolase  43.58 
 
 
379 aa  300  3e-80  Dechloromonas aromatica RCB  Bacteria  normal  0.829613  normal  0.0284762 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  45.71 
 
 
339 aa  299  4e-80  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2999  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  44.69 
 
 
361 aa  298  8e-80  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.669597 
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  45.56 
 
 
340 aa  298  9e-80  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.129077 
 
 
-
 
NC_010506  Swoo_3313  response regulator receiver modulated metal dependent phosphohydrolase  45.68 
 
 
343 aa  297  2e-79  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00000482447 
 
 
-
 
NC_003910  CPS_4164  response regulator/phosphatase  44.2 
 
 
352 aa  296  4e-79  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  44.85 
 
 
338 aa  295  1e-78  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  44.85 
 
 
338 aa  294  1e-78  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  44.57 
 
 
338 aa  293  3e-78  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  44.57 
 
 
338 aa  293  3e-78  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3165  response regulator receiver modulated metal dependent phosphohydrolase  43.55 
 
 
367 aa  293  3e-78  Magnetococcus sp. MC-1  Bacteria  normal  0.0569095  normal  0.0154692 
 
 
-
 
NC_007954  Sden_3723  response regulator receiver  41.83 
 
 
338 aa  289  5.0000000000000004e-77  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01756  Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase)  43.61 
 
 
337 aa  287  2e-76  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.844049  n/a   
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  40.32 
 
 
331 aa  286  5.999999999999999e-76  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2248  response regulator receiver modulated metal dependent phosphohydrolase  40.28 
 
 
331 aa  278  2e-73  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3676  response regulator receiver modulated metal dependent phosphohydrolase  42.02 
 
 
328 aa  277  2e-73  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1086  response regulator receiver modulated metal dependent phosphohydrolase  41.9 
 
 
331 aa  273  3e-72  Marinomonas sp. MWYL1  Bacteria  normal  0.226857  hitchhiker  0.0000000112469 
 
 
-
 
NC_010814  Glov_3523  response regulator receiver modulated metal dependent phosphohydrolase  41.5 
 
 
363 aa  272  7e-72  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  41.34 
 
 
358 aa  272  9e-72  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2382  response regulator receiver modulated metal dependent phosphohydrolase  40.11 
 
 
359 aa  272  9e-72  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0792  response regulator receiver modulated metal dependent phosphohydrolase  42.62 
 
 
331 aa  272  9e-72  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3231  response regulator receiver modulated metal dependent phosphohydrolase  42.62 
 
 
331 aa  272  9e-72  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_3111  response regulator receiver protein  42.46 
 
 
328 aa  272  9e-72  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0637882 
 
 
-
 
NC_013522  Taci_1744  response regulator receiver modulated metal dependent phosphohydrolase  41.44 
 
 
373 aa  268  8e-71  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3778  response regulator  51.15 
 
 
629 aa  267  2e-70  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3334  response regulator receiver modulated metal dependent phosphohydrolase  40.95 
 
 
331 aa  267  2e-70  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_25160  response regulator  40.33 
 
 
356 aa  265  1e-69  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  41.71 
 
 
348 aa  263  3e-69  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_007778  RPB_2330  metal dependent phosphohydrolase  55.56 
 
 
466 aa  263  4e-69  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.541081  normal  0.158055 
 
 
-
 
NC_010002  Daci_6015  response regulator receiver modulated metal dependent phosphohydrolase  40.5 
 
 
333 aa  261  1e-68  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2017  response regulator receiver modulated metal dependent phosphohydrolase  40.72 
 
 
379 aa  259  5.0000000000000005e-68  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.98115  n/a   
 
 
-
 
NC_007954  Sden_0663  response regulator receiver  41.37 
 
 
340 aa  258  9e-68  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0913  hypothetical protein  58.57 
 
 
492 aa  250  2e-65  Vibrio cholerae O395  Bacteria  normal  0.512089  n/a   
 
 
-
 
NC_013173  Dbac_0632  metal dependent phosphohydrolase  49.81 
 
 
654 aa  249  4e-65  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.0000219793  n/a   
 
 
-
 
NC_011312  VSAL_I2231  putative metal dependent phosphohydrolase  54.3 
 
 
440 aa  249  5e-65  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0187  response regulator receiver modulated metal dependent phosphohydrolase  39.66 
 
 
354 aa  249  8e-65  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0125166 
 
 
-
 
NC_010814  Glov_2722  response regulator receiver modulated metal dependent phosphohydrolase  38.6 
 
 
378 aa  248  1e-64  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1136  response regulator receiver modulated metal dependent phosphohydrolase  40.4 
 
 
348 aa  247  2e-64  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0263  metal dependent phosphohydrolase  52.86 
 
 
579 aa  246  6e-64  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1739  response regulator receiver modulated metal dependent phosphohydrolase  39.27 
 
 
362 aa  245  8e-64  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.0711596  n/a   
 
 
-
 
NC_014148  Plim_0679  response regulator receiver  37.92 
 
 
337 aa  238  1e-61  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0836964  n/a   
 
 
-
 
NC_011662  Tmz1t_1183  response regulator receiver modulated metal dependent phosphohydrolase  37.92 
 
 
363 aa  236  5.0000000000000005e-61  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0055  metal dependent phosphohydrolase  53.08 
 
 
248 aa  233  5e-60  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_4196  response regulator receiver modulated metal dependent phosphohydrolase  37.82 
 
 
350 aa  229  7e-59  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_0080  response regulator receiver modulated metal dependent phosphohydrolase  37.4 
 
 
357 aa  229  8e-59  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0063  response regulator receiver modulated metal dependent phosphohydrolase  38.07 
 
 
357 aa  229  8e-59  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.56416e-22 
 
 
-
 
NC_007298  Daro_2902  response regulator receiver  36.29 
 
 
350 aa  228  1e-58  Dechloromonas aromatica RCB  Bacteria  normal  0.1984  normal  0.246098 
 
 
-
 
NC_010001  Cphy_0512  response regulator receiver modulated metal dependent phosphohydrolase  37.57 
 
 
368 aa  223  3e-57  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00189837  n/a   
 
 
-
 
NC_010814  Glov_1546  response regulator receiver modulated metal dependent phosphohydrolase  35.33 
 
 
368 aa  223  4.9999999999999996e-57  Geobacter lovleyi SZ  Bacteria  normal  0.61009  n/a   
 
 
-
 
NC_010717  PXO_00476  two-component system regulatory protein with HD-GYP domain  37.24 
 
 
322 aa  219  7e-56  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1897  metal-dependent phosphohydrolase  48.67 
 
 
671 aa  219  8.999999999999998e-56  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1678  putative PAS/PAC sensor protein  46.29 
 
 
625 aa  218  1e-55  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0321383  n/a   
 
 
-
 
NC_011769  DvMF_1407  metal dependent phosphohydrolase  49.33 
 
 
691 aa  217  2e-55  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008576  Mmc1_2945  response regulator receiver modulated metal dependent phosphohydrolase  36.75 
 
 
377 aa  216  5.9999999999999996e-55  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2574  response regulator  36.44 
 
 
368 aa  215  9.999999999999999e-55  Geobacter sulfurreducens PCA  Bacteria  normal  0.482084  n/a   
 
 
-
 
NC_007298  Daro_3285  response regulator receiver  37.67 
 
 
362 aa  213  3.9999999999999995e-54  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1924  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  36.14 
 
 
367 aa  213  4.9999999999999996e-54  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.620973  n/a   
 
 
-
 
NC_007520  Tcr_1911  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  39.15 
 
 
268 aa  212  1e-53  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0445959  n/a   
 
 
-
 
NC_008609  Ppro_3046  response regulator receiver modulated metal dependent phosphohydrolase  36.02 
 
 
365 aa  211  2e-53  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0429754  n/a   
 
 
-
 
NC_011831  Cagg_0863  response regulator receiver modulated metal dependent phosphohydrolase  33.99 
 
 
351 aa  209  8e-53  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.297515  normal  0.141829 
 
 
-
 
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