More than 300 homologs were found in PanDaTox collection
for query gene Ssed_1983 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009092  Shew_2119  methyl-accepting chemotaxis sensory transducer  72.81 
 
 
548 aa  801    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2617  methyl-accepting chemotaxis sensory transducer  77.01 
 
 
548 aa  843    Shewanella woodyi ATCC 51908  Bacteria  normal  0.224982  normal  0.210295 
 
 
-
 
NC_009831  Ssed_1983  methyl-accepting chemotaxis sensory transducer  100 
 
 
548 aa  1097    Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000213036  normal  0.437149 
 
 
-
 
NC_008700  Sama_2327  putative methyl-accepting chemotaxis sensory transducer  59.27 
 
 
554 aa  635    Shewanella amazonensis SB2B  Bacteria  normal  0.644098  normal  0.637343 
 
 
-
 
NC_008345  Sfri_2212  methyl-accepting chemotaxis sensory transducer  63.5 
 
 
549 aa  687    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2174  methyl-accepting chemotaxis sensory transducer  38.08 
 
 
544 aa  342  1e-92  Pseudomonas mendocina ymp  Bacteria  normal  decreased coverage  0.00506259 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  37.84 
 
 
548 aa  332  9e-90  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_007005  Psyr_1776  histidine kinase, HAMP region: chemotaxis sensory transducer  36.76 
 
 
543 aa  332  1e-89  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.363817 
 
 
-
 
NC_007492  Pfl01_2601  chemotaxis sensory transducer  36.78 
 
 
569 aa  328  2.0000000000000001e-88  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.441915  normal  0.36116 
 
 
-
 
NC_008321  Shewmr4_1767  methyl-accepting chemotaxis sensory transducer  37.39 
 
 
545 aa  325  1e-87  Shewanella sp. MR-4  Bacteria  normal  0.381763  normal 
 
 
-
 
NC_003910  CPS_4964  methyl-accepting chemotaxis protein  36.88 
 
 
545 aa  325  2e-87  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1845  methyl-accepting chemotaxis sensory transducer  37.39 
 
 
545 aa  324  2e-87  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2240  methyl-accepting chemotaxis protein  37.55 
 
 
545 aa  323  7e-87  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2463  methyl-accepting chemotaxis sensory transducer  36.35 
 
 
545 aa  316  8e-85  Shewanella baltica OS195  Bacteria  normal  0.0650014  normal  0.35347 
 
 
-
 
NC_009665  Shew185_2347  methyl-accepting chemotaxis sensory transducer  36.35 
 
 
545 aa  316  8e-85  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2000  methyl-accepting chemotaxis sensory transducer with Cache sensor  36.35 
 
 
545 aa  315  9.999999999999999e-85  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.0000194984 
 
 
-
 
NC_009052  Sbal_2358  methyl-accepting chemotaxis sensory transducer  36.35 
 
 
545 aa  315  9.999999999999999e-85  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2659  methyl-accepting chemotaxis protein  37.38 
 
 
556 aa  313  3.9999999999999997e-84  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2828  methyl-accepting chemotaxis sensory transducer  35.35 
 
 
544 aa  312  1e-83  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2116  methyl-accepting chemotaxis sensory transducer  36.28 
 
 
545 aa  312  1e-83  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  37.62 
 
 
564 aa  310  5.9999999999999995e-83  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2861  methyl-accepting chemotaxis sensory transducer  35.16 
 
 
544 aa  309  6.999999999999999e-83  Pseudomonas putida KT2440  Bacteria  normal  normal  0.445183 
 
 
-
 
NC_008577  Shewana3_2254  methyl-accepting chemotaxis sensory transducer  37.52 
 
 
545 aa  308  1.0000000000000001e-82  Shewanella sp. ANA-3  Bacteria  normal  normal  0.492 
 
 
-
 
NC_002939  GSU0400  methyl-accepting chemotaxis protein  33.52 
 
 
549 aa  308  2.0000000000000002e-82  Geobacter sulfurreducens PCA  Bacteria  normal  0.431065  n/a   
 
 
-
 
NC_009831  Ssed_2412  methyl-accepting chemotaxis sensory transducer  37.43 
 
 
545 aa  306  7e-82  Shewanella sediminis HAW-EB3  Bacteria  normal  0.516535  hitchhiker  0.00000653474 
 
 
-
 
NC_010501  PputW619_2757  methyl-accepting chemotaxis sensory transducer  34.13 
 
 
544 aa  305  2.0000000000000002e-81  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2920  methyl-accepting chemotaxis sensory transducer  34.98 
 
 
544 aa  302  8.000000000000001e-81  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3699  methyl-accepting chemotaxis protein  39.11 
 
 
543 aa  300  7e-80  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2194  methyl-accepting chemotaxis sensory transducer  36.91 
 
 
545 aa  287  4e-76  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00216283 
 
 
-
 
NC_009457  VC0395_A2596  methyl-accepting chemotaxis protein  35.78 
 
 
564 aa  285  1.0000000000000001e-75  Vibrio cholerae O395  Bacteria  unclonable  0.00000000000057467  n/a   
 
 
-
 
NC_012918  GM21_3709  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.72 
 
 
546 aa  279  7e-74  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013456  VEA_001822  methyl-accepting chemotaxis protein  35.82 
 
 
557 aa  279  8e-74  Vibrio sp. Ex25  Bacteria  unclonable  0.00000124429  n/a   
 
 
-
 
NC_009997  Sbal195_1793  methyl-accepting chemotaxis sensory transducer  33.52 
 
 
533 aa  275  1.0000000000000001e-72  Shewanella baltica OS195  Bacteria  normal  0.0175347  normal  0.776493 
 
 
-
 
NC_009901  Spea_1997  methyl-accepting chemotaxis sensory transducer  35.09 
 
 
546 aa  274  2.0000000000000002e-72  Shewanella pealeana ATCC 700345  Bacteria  normal  0.179465  n/a   
 
 
-
 
NC_011146  Gbem_3600  methyl-accepting chemotaxis sensory transducer  32.64 
 
 
546 aa  273  5.000000000000001e-72  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2530  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.33 
 
 
533 aa  273  6e-72  Shewanella baltica OS223  Bacteria  normal  0.616311  hitchhiker  0.00580613 
 
 
-
 
NC_009438  Sputcn32_2347  methyl-accepting chemotaxis sensory transducer  33.39 
 
 
533 aa  273  6e-72  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1030  methyl-accepting chemotaxis protein  33.13 
 
 
549 aa  270  7e-71  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03718  putative chemotaxis sensory protein  33.7 
 
 
540 aa  270  7e-71  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0837  methyl-accepting chemotaxis sensory transducer  36.82 
 
 
554 aa  268  1e-70  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3759  methyl-accepting chemotaxis sensory transducer  34.7 
 
 
554 aa  268  2e-70  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0990388  normal 
 
 
-
 
NC_009092  Shew_0808  methyl-accepting chemotaxis sensory transducer  33.69 
 
 
554 aa  265  1e-69  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2521  methyl-accepting chemotaxis sensory transducer  33.15 
 
 
533 aa  264  3e-69  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000172201 
 
 
-
 
NC_009092  Shew_1868  methyl-accepting chemotaxis sensory transducer  36.49 
 
 
545 aa  263  8e-69  Shewanella loihica PV-4  Bacteria  normal  hitchhiker  0.0000255174 
 
 
-
 
NC_013457  VEA_000971  methyl-accepting chemotaxis protein  36.36 
 
 
553 aa  258  2e-67  Vibrio sp. Ex25  Bacteria  normal  0.370017  n/a   
 
 
-
 
NC_009457  VC0395_A0868  methyl-accepting chemotaxis protein  33.76 
 
 
536 aa  256  5e-67  Vibrio cholerae O395  Bacteria  hitchhiker  0.000231989  n/a   
 
 
-
 
NC_009997  Sbal195_3617  methyl-accepting chemotaxis sensory transducer  34.66 
 
 
554 aa  256  8e-67  Shewanella baltica OS195  Bacteria  normal  normal  0.964358 
 
 
-
 
NC_008345  Sfri_1770  methyl-accepting chemotaxis sensory transducer  33.03 
 
 
538 aa  256  8e-67  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0987  methyl-accepting chemotaxis protein  34.59 
 
 
554 aa  256  1.0000000000000001e-66  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_3532  methyl-accepting chemotaxis sensory transducer  34.39 
 
 
555 aa  255  1.0000000000000001e-66  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3422  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.66 
 
 
554 aa  255  1.0000000000000001e-66  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2880  putative methyl-accepting chemotaxis sensory transducer  33.27 
 
 
558 aa  255  2.0000000000000002e-66  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0870  methyl-accepting chemotaxis sensory transducer  34.45 
 
 
554 aa  254  3e-66  Shewanella baltica OS155  Bacteria  normal  0.0571565  n/a   
 
 
-
 
NC_009665  Shew185_3494  methyl-accepting chemotaxis sensory transducer  34.45 
 
 
554 aa  254  3e-66  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0581  methyl-accepting chemotaxis sensory transducer  34.37 
 
 
554 aa  254  3e-66  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3052  methyl-accepting chemotaxis sensory transducer  35.08 
 
 
554 aa  253  5.000000000000001e-66  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  44.41 
 
 
639 aa  253  5.000000000000001e-66  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_012918  GM21_3217  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.42 
 
 
584 aa  252  1e-65  Geobacter sp. M21  Bacteria  n/a    normal  0.480757 
 
 
-
 
NC_010814  Glov_0461  methyl-accepting chemotaxis sensory transducer  32.73 
 
 
569 aa  252  1e-65  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1078  methyl-accepting chemotaxis sensory transducer  32.25 
 
 
587 aa  251  2e-65  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  43.79 
 
 
638 aa  251  2e-65  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_008577  Shewana3_3299  methyl-accepting chemotaxis sensory transducer  34.53 
 
 
554 aa  251  3e-65  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3199  methyl-accepting chemotaxis sensory transducer  33.76 
 
 
554 aa  250  4e-65  Shewanella sp. MR-7  Bacteria  normal  normal  0.927661 
 
 
-
 
NC_010483  TRQ2_1321  methyl-accepting chemotaxis sensory transducer  31.45 
 
 
566 aa  249  8e-65  Thermotoga sp. RQ2  Bacteria  decreased coverage  0.00082247  n/a   
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  34.67 
 
 
559 aa  249  9e-65  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1653  putative methyl-accepting chemotaxis sensory transducer  34.97 
 
 
538 aa  249  1e-64  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0877  methyl-accepting chemotaxis sensory transducer  31.2 
 
 
540 aa  249  1e-64  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.11332 
 
 
-
 
NC_009784  VIBHAR_05691  histidine kinase  32.96 
 
 
538 aa  248  2e-64  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  42.37 
 
 
638 aa  247  4e-64  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_009438  Sputcn32_3200  methyl-accepting chemotaxis sensory transducer  33.4 
 
 
554 aa  247  4e-64  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2825  methyl-accepting chemotaxis sensory transducer  30.38 
 
 
570 aa  246  6.999999999999999e-64  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000443347 
 
 
-
 
NC_008321  Shewmr4_0824  methyl-accepting chemotaxis sensory transducer  34.52 
 
 
554 aa  246  6.999999999999999e-64  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.00067966 
 
 
-
 
NC_009486  Tpet_1365  methyl-accepting chemotaxis sensory transducer  31.45 
 
 
566 aa  246  9.999999999999999e-64  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1044  methyl-accepting chemotaxis sensory transducer  33.01 
 
 
584 aa  246  9.999999999999999e-64  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  44.07 
 
 
636 aa  244  3e-63  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0672  methyl-accepting chemotaxis sensory transducer  30.94 
 
 
568 aa  243  5e-63  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  43.5 
 
 
638 aa  242  1e-62  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_009483  Gura_3394  methyl-accepting chemotaxis sensory transducer  31.45 
 
 
664 aa  241  2e-62  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000171268  n/a   
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  34.77 
 
 
560 aa  241  2.9999999999999997e-62  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  45.13 
 
 
637 aa  241  4e-62  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_009784  VIBHAR_07022  histidine kinase  35.48 
 
 
553 aa  238  1e-61  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_3323  methyl-accepting chemotaxis sensory transducer  33.82 
 
 
554 aa  239  1e-61  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4941  methyl-accepting chemotaxis sensory transducer  30.29 
 
 
563 aa  239  1e-61  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.396774  n/a   
 
 
-
 
NC_008577  Shewana3_3491  methyl-accepting chemotaxis sensory transducer  33.82 
 
 
554 aa  238  2e-61  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0630  methyl-accepting chemotaxis sensory transducer  33.61 
 
 
554 aa  238  2e-61  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3666  methyl-accepting chemotaxis sensory transducer  33.19 
 
 
554 aa  238  2e-61  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  43.18 
 
 
674 aa  238  3e-61  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  39.78 
 
 
541 aa  237  3e-61  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_009052  Sbal_0641  methyl-accepting chemotaxis sensory transducer  33.19 
 
 
568 aa  237  4e-61  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  39.89 
 
 
568 aa  237  4e-61  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  41.81 
 
 
638 aa  237  5.0000000000000005e-61  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  31.2 
 
 
585 aa  237  5.0000000000000005e-61  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_009997  Sbal195_3789  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
554 aa  236  7e-61  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3601  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.98 
 
 
554 aa  235  1.0000000000000001e-60  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0339  methyl-accepting chemotaxis sensory transducer  36.22 
 
 
558 aa  234  4.0000000000000004e-60  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  38.74 
 
 
713 aa  232  1e-59  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_008752  Aave_2643  methyl-accepting chemotaxis sensory transducer  30.02 
 
 
541 aa  232  2e-59  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0238907  normal  0.0164957 
 
 
-
 
NC_007778  RPB_4280  methyl-accepting chemotaxis sensory transducer  32.51 
 
 
563 aa  232  2e-59  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  40 
 
 
637 aa  231  2e-59  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_009784  VIBHAR_05646  histidine kinase  33.86 
 
 
482 aa  230  6e-59  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
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