More than 300 homologs were found in PanDaTox collection
for query gene Ssed_1498 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_1498  methyl-accepting chemotaxis sensory transducer  100 
 
 
687 aa  1390    Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000111484  normal 
 
 
-
 
NC_009092  Shew_3044  methyl-accepting chemotaxis sensory transducer  73.4 
 
 
688 aa  1013    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2783  methyl-accepting chemotaxisprotein  59.28 
 
 
690 aa  804    Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.468562 
 
 
-
 
NC_004578  PSPTO_3237  methyl-accepting chemotaxis protein  52.31 
 
 
771 aa  335  2e-90  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2554  chemotaxis sensory transducer  48.96 
 
 
663 aa  314  2.9999999999999996e-84  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.486048 
 
 
-
 
NC_008577  Shewana3_3924  methyl-accepting chemotaxis sensory transducer  49.13 
 
 
527 aa  303  5.000000000000001e-81  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2544  methyl-accepting chemotaxis sensory transducer  48.04 
 
 
633 aa  303  7.000000000000001e-81  Shewanella baltica OS185  Bacteria  hitchhiker  0.00517521  n/a   
 
 
-
 
NC_008322  Shewmr7_3799  methyl-accepting chemotaxis sensory transducer  48.98 
 
 
527 aa  300  8e-80  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_4216  methyl-accepting chemotaxis sensory transducer  49.29 
 
 
647 aa  298  2e-79  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3728  methyl-accepting chemotaxis sensory transducer  48.98 
 
 
527 aa  298  3e-79  Shewanella sp. MR-4  Bacteria  normal  normal  0.436185 
 
 
-
 
NC_011663  Sbal223_0226  methyl-accepting chemotaxis sensory transducer  49.27 
 
 
527 aa  295  2e-78  Shewanella baltica OS223  Bacteria  normal  normal  0.16836 
 
 
-
 
NC_009665  Shew185_4113  methyl-accepting chemotaxis sensory transducer  49.27 
 
 
527 aa  294  3e-78  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4233  methyl-accepting chemotaxis sensory transducer  49.27 
 
 
525 aa  294  4e-78  Shewanella baltica OS195  Bacteria  normal  hitchhiker  0.000524679 
 
 
-
 
NC_009092  Shew_0237  methyl-accepting chemotaxis sensory transducer  46.39 
 
 
632 aa  292  1e-77  Shewanella loihica PV-4  Bacteria  normal  normal  0.997473 
 
 
-
 
NC_009438  Sputcn32_3200  methyl-accepting chemotaxis sensory transducer  38.42 
 
 
554 aa  291  2e-77  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0824  methyl-accepting chemotaxis sensory transducer  37.05 
 
 
554 aa  291  4e-77  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.00067966 
 
 
-
 
NC_008577  Shewana3_3299  methyl-accepting chemotaxis sensory transducer  37.45 
 
 
554 aa  289  1e-76  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0987  methyl-accepting chemotaxis protein  37.97 
 
 
554 aa  288  2e-76  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_0837  methyl-accepting chemotaxis sensory transducer  38.21 
 
 
554 aa  287  4e-76  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_02418  hypothetical protein  47.44 
 
 
578 aa  287  5.999999999999999e-76  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_3199  methyl-accepting chemotaxis sensory transducer  37.05 
 
 
554 aa  286  9e-76  Shewanella sp. MR-7  Bacteria  normal  normal  0.927661 
 
 
-
 
NC_009438  Sputcn32_3052  methyl-accepting chemotaxis sensory transducer  37.83 
 
 
554 aa  286  1.0000000000000001e-75  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0641  methyl-accepting chemotaxis sensory transducer  37.45 
 
 
568 aa  285  2.0000000000000002e-75  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3789  methyl-accepting chemotaxis sensory transducer  37.65 
 
 
554 aa  285  2.0000000000000002e-75  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3601  methyl-accepting chemotaxis sensory transducer with Cache sensor  37.45 
 
 
554 aa  284  4.0000000000000003e-75  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0962  methyl-accepting chemotaxis protein  45.81 
 
 
643 aa  283  7.000000000000001e-75  Vibrio cholerae O395  Bacteria  hitchhiker  0.000917898  n/a   
 
 
-
 
NC_008321  Shewmr4_3323  methyl-accepting chemotaxis sensory transducer  38.05 
 
 
554 aa  283  9e-75  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2880  putative methyl-accepting chemotaxis sensory transducer  36.34 
 
 
558 aa  281  2e-74  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0630  methyl-accepting chemotaxis sensory transducer  37.85 
 
 
554 aa  282  2e-74  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0808  methyl-accepting chemotaxis sensory transducer  36.12 
 
 
554 aa  282  2e-74  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3491  methyl-accepting chemotaxis sensory transducer  37.85 
 
 
554 aa  282  2e-74  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3666  methyl-accepting chemotaxis sensory transducer  37.45 
 
 
554 aa  282  2e-74  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1023  methyl-accepting chemotaxis protein  46.31 
 
 
578 aa  279  1e-73  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3759  methyl-accepting chemotaxis sensory transducer  37.5 
 
 
554 aa  278  2e-73  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0990388  normal 
 
 
-
 
NC_009052  Sbal_0870  methyl-accepting chemotaxis sensory transducer  37.13 
 
 
554 aa  278  2e-73  Shewanella baltica OS155  Bacteria  normal  0.0571565  n/a   
 
 
-
 
NC_003910  CPS_4711  methyl-accepting chemotaxis protein  47.06 
 
 
633 aa  278  3e-73  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3617  methyl-accepting chemotaxis sensory transducer  36.93 
 
 
554 aa  278  3e-73  Shewanella baltica OS195  Bacteria  normal  normal  0.964358 
 
 
-
 
NC_009665  Shew185_3494  methyl-accepting chemotaxis sensory transducer  36.93 
 
 
554 aa  277  6e-73  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3422  methyl-accepting chemotaxis sensory transducer with Cache sensor  36.93 
 
 
554 aa  276  7e-73  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_3839  methyl-accepting chemotaxis protein  48.32 
 
 
636 aa  269  1e-70  Colwellia psychrerythraea 34H  Bacteria  normal  0.406017  n/a   
 
 
-
 
NC_009831  Ssed_3532  methyl-accepting chemotaxis sensory transducer  33.89 
 
 
555 aa  261  3e-68  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0581  methyl-accepting chemotaxis sensory transducer  34.52 
 
 
554 aa  258  4e-67  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2596  methyl-accepting chemotaxis protein  34.31 
 
 
564 aa  256  8e-67  Vibrio cholerae O395  Bacteria  unclonable  0.00000000000057467  n/a   
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  37.26 
 
 
560 aa  243  1e-62  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  32.57 
 
 
559 aa  242  2e-62  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  33.2 
 
 
548 aa  234  4.0000000000000004e-60  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_013456  VEA_001822  methyl-accepting chemotaxis protein  34.09 
 
 
557 aa  231  3e-59  Vibrio sp. Ex25  Bacteria  unclonable  0.00000124429  n/a   
 
 
-
 
NC_009654  Mmwyl1_0877  methyl-accepting chemotaxis sensory transducer  32.17 
 
 
540 aa  229  1e-58  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.11332 
 
 
-
 
NC_008463  PA14_29800  putative chemotaxis transducer  36.72 
 
 
561 aa  222  1.9999999999999999e-56  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00431462  normal 
 
 
-
 
NC_009656  PSPA7_2548  putative chemotaxis transducer  36.72 
 
 
561 aa  221  3e-56  Pseudomonas aeruginosa PA7  Bacteria  normal  0.271227  n/a   
 
 
-
 
NC_007492  Pfl01_3768  chemotaxis sensory transducer  34.14 
 
 
560 aa  221  3.9999999999999997e-56  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_2141  chemotaxis sensory transducer  26.96 
 
 
708 aa  220  7.999999999999999e-56  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1030  methyl-accepting chemotaxis protein  30.18 
 
 
549 aa  219  8.999999999999998e-56  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2119  methyl-accepting chemotaxis sensory transducer  33.47 
 
 
548 aa  218  2e-55  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000971  methyl-accepting chemotaxis protein  35.96 
 
 
553 aa  217  7e-55  Vibrio sp. Ex25  Bacteria  normal  0.370017  n/a   
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  37.04 
 
 
568 aa  216  9e-55  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_07022  histidine kinase  35 
 
 
553 aa  213  7.999999999999999e-54  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_1983  methyl-accepting chemotaxis sensory transducer  33.97 
 
 
548 aa  213  1e-53  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000213036  normal  0.437149 
 
 
-
 
NC_009457  VC0395_A0868  methyl-accepting chemotaxis protein  31.79 
 
 
536 aa  211  3e-53  Vibrio cholerae O395  Bacteria  hitchhiker  0.000231989  n/a   
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  35.8 
 
 
716 aa  209  2e-52  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_007005  Psyr_1776  histidine kinase, HAMP region: chemotaxis sensory transducer  28.66 
 
 
543 aa  209  2e-52  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.363817 
 
 
-
 
NC_003910  CPS_3864  methyl-accepting chemotaxis protein  38.2 
 
 
568 aa  207  5e-52  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1586  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
626 aa  207  5e-52  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  35.14 
 
 
713 aa  207  5e-52  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  36.13 
 
 
545 aa  207  6e-52  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_009438  Sputcn32_2347  methyl-accepting chemotaxis sensory transducer  32.68 
 
 
533 aa  206  9e-52  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2617  methyl-accepting chemotaxis sensory transducer  34.01 
 
 
548 aa  206  1e-51  Shewanella woodyi ATCC 51908  Bacteria  normal  0.224982  normal  0.210295 
 
 
-
 
NC_008740  Maqu_0339  methyl-accepting chemotaxis sensory transducer  32.35 
 
 
558 aa  206  1e-51  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2154  methyl-accepting chemotaxis sensory transducer  36.53 
 
 
627 aa  206  1e-51  Pseudomonas mendocina ymp  Bacteria  normal  0.0789614  normal  0.507372 
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  31.28 
 
 
639 aa  205  2e-51  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  36.61 
 
 
637 aa  205  2e-51  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_009783  VIBHAR_01884  hypothetical protein  31.27 
 
 
627 aa  204  4e-51  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_0081  putative methyl-accepting chemotaxis sensory transducer  39.51 
 
 
544 aa  204  4e-51  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2327  putative methyl-accepting chemotaxis sensory transducer  31.49 
 
 
554 aa  203  7e-51  Shewanella amazonensis SB2B  Bacteria  normal  0.644098  normal  0.637343 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  35.45 
 
 
712 aa  203  7e-51  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_009654  Mmwyl1_0969  methyl-accepting chemotaxis sensory transducer  32.96 
 
 
631 aa  203  7e-51  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2530  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.13 
 
 
533 aa  203  8e-51  Shewanella baltica OS223  Bacteria  normal  0.616311  hitchhiker  0.00580613 
 
 
-
 
NC_008321  Shewmr4_1767  methyl-accepting chemotaxis sensory transducer  30.72 
 
 
545 aa  203  8e-51  Shewanella sp. MR-4  Bacteria  normal  0.381763  normal 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  32.09 
 
 
564 aa  203  9e-51  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1793  methyl-accepting chemotaxis sensory transducer  30.13 
 
 
533 aa  203  9.999999999999999e-51  Shewanella baltica OS195  Bacteria  normal  0.0175347  normal  0.776493 
 
 
-
 
NC_008322  Shewmr7_1845  methyl-accepting chemotaxis sensory transducer  30.72 
 
 
545 aa  202  9.999999999999999e-51  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  35.16 
 
 
712 aa  202  9.999999999999999e-51  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009438  Sputcn32_2116  methyl-accepting chemotaxis sensory transducer  31.6 
 
 
545 aa  202  1.9999999999999998e-50  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2955  chemotaxis sensory transducer  37.78 
 
 
497 aa  202  1.9999999999999998e-50  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3856  methyl-accepting chemotaxis sensory transducer  32.26 
 
 
640 aa  202  1.9999999999999998e-50  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.825575 
 
 
-
 
NC_007492  Pfl01_2601  chemotaxis sensory transducer  30.64 
 
 
569 aa  201  3e-50  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.441915  normal  0.36116 
 
 
-
 
NC_009092  Shew_0596  methyl-accepting chemotaxis sensory transducer  31.1 
 
 
640 aa  201  3e-50  Shewanella loihica PV-4  Bacteria  normal  normal  0.270432 
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  35.67 
 
 
638 aa  201  3e-50  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  30.71 
 
 
627 aa  201  3.9999999999999996e-50  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_008463  PA14_26280  putative chemotaxis transducer  37.65 
 
 
545 aa  201  5e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.917899 
 
 
-
 
NC_008345  Sfri_2212  methyl-accepting chemotaxis sensory transducer  34.17 
 
 
549 aa  199  2.0000000000000003e-49  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01753  hypothetical protein  36.76 
 
 
545 aa  199  2.0000000000000003e-49  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A2659  methyl-accepting chemotaxis protein  33.05 
 
 
556 aa  198  3e-49  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3491  methyl-accepting chemotaxis sensory transducer with Cache sensor  36.83 
 
 
626 aa  198  3e-49  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4029  methyl-accepting chemotaxis sensory transducer  35.29 
 
 
630 aa  197  4.0000000000000005e-49  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011313  VSAL_II0756  methyl-accepting chemotaxis protein  35.32 
 
 
558 aa  197  4.0000000000000005e-49  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2301  methyl-accepting chemotaxis sensory transducer  35.24 
 
 
705 aa  197  5.000000000000001e-49  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2521  methyl-accepting chemotaxis sensory transducer  31.83 
 
 
533 aa  197  5.000000000000001e-49  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000172201 
 
 
-
 
NC_011313  VSAL_II1022  methyl-accepting chemotaxis protein  29.13 
 
 
628 aa  197  8.000000000000001e-49  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.771007  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  32.86 
 
 
637 aa  196  9e-49  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
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