More than 300 homologs were found in PanDaTox collection
for query gene Ssed_1012 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_1012  hypothetical protein  100 
 
 
626 aa  1263    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2502  putative methyl-accepting chemotaxis sensory transducer  46.02 
 
 
649 aa  282  1e-74  Shewanella amazonensis SB2B  Bacteria  normal  0.988754  normal 
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  34.5 
 
 
646 aa  241  2.9999999999999997e-62  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_007519  Dde_3561  methyl-accepting chemotaxis sensory transducer  27.95 
 
 
673 aa  231  4e-59  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.506738  n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  40 
 
 
638 aa  225  2e-57  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_008740  Maqu_3809  methyl-accepting chemotaxis sensory transducer  39.89 
 
 
547 aa  220  7.999999999999999e-56  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1150  chemotaxis sensory transducer  37.84 
 
 
551 aa  216  9.999999999999999e-55  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  38.81 
 
 
621 aa  215  1.9999999999999998e-54  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  40.21 
 
 
541 aa  213  5.999999999999999e-54  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_004578  PSPTO_1334  methyl-accepting chemotaxis protein  38.07 
 
 
550 aa  213  7e-54  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  40.05 
 
 
650 aa  213  7.999999999999999e-54  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  45.55 
 
 
523 aa  212  1e-53  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  41.23 
 
 
674 aa  212  2e-53  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  41.85 
 
 
638 aa  212  2e-53  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  41.77 
 
 
638 aa  210  5e-53  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  38.35 
 
 
620 aa  211  5e-53  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_008740  Maqu_3284  methyl-accepting chemotaxis sensory transducer  38.52 
 
 
522 aa  209  9e-53  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  38.7 
 
 
637 aa  209  9e-53  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  35.26 
 
 
638 aa  209  1e-52  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_007954  Sden_1091  chemotaxis sensory transducer  37.64 
 
 
620 aa  209  1e-52  Shewanella denitrificans OS217  Bacteria  normal  0.0174472  n/a   
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  33.19 
 
 
620 aa  208  2e-52  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  36.4 
 
 
638 aa  209  2e-52  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_008345  Sfri_0847  methyl-accepting chemotaxis sensory transducer  38.92 
 
 
620 aa  208  3e-52  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.566037  n/a   
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  41.23 
 
 
638 aa  207  5e-52  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0030  putative methyl-accepting chemotaxis sensory transducer  38.07 
 
 
660 aa  207  5e-52  Shewanella amazonensis SB2B  Bacteria  normal  0.136855  normal  0.0162002 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  41.23 
 
 
638 aa  207  7e-52  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  39.77 
 
 
541 aa  206  8e-52  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_007005  Psyr_0868  histidine kinase, HAMP region: chemotaxis sensory transducer  33.53 
 
 
546 aa  205  2e-51  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.872643 
 
 
-
 
NC_007954  Sden_0712  chemotaxis sensory transducer  43.54 
 
 
541 aa  205  2e-51  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000566108  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  40.79 
 
 
543 aa  204  3e-51  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  32.95 
 
 
636 aa  205  3e-51  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  37.99 
 
 
633 aa  204  5e-51  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  41.81 
 
 
637 aa  204  5e-51  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  37.01 
 
 
640 aa  204  5e-51  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_011901  Tgr7_0712  putative methyl-accepting chemotaxis sensory transducer  41.72 
 
 
624 aa  204  5e-51  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5811  putative chemotaxis transducer  43.55 
 
 
647 aa  204  5e-51  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  36.87 
 
 
642 aa  203  6e-51  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_009831  Ssed_0529  methyl-accepting chemotaxis protein-like protein  37.09 
 
 
677 aa  204  6e-51  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1353  methyl-accepting chemotaxis sensory transducer  37.57 
 
 
547 aa  203  6e-51  Pseudomonas mendocina ymp  Bacteria  normal  0.769572  normal 
 
 
-
 
NC_010506  Swoo_0252  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.18 
 
 
623 aa  203  7e-51  Shewanella woodyi ATCC 51908  Bacteria  normal  0.866394  normal 
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  36.59 
 
 
639 aa  203  9e-51  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  38.75 
 
 
639 aa  203  9.999999999999999e-51  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  37.68 
 
 
620 aa  202  9.999999999999999e-51  Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  41.78 
 
 
552 aa  203  9.999999999999999e-51  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_009656  PSPA7_4874  chemotactic transducer PctC  31.27 
 
 
632 aa  202  9.999999999999999e-51  Pseudomonas aeruginosa PA7  Bacteria  normal  0.153332  n/a   
 
 
-
 
NC_009665  Shew185_3619  methyl-accepting chemotaxis sensory transducer  36.57 
 
 
620 aa  202  1.9999999999999998e-50  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2301  methyl-accepting chemotaxis sensory transducer  37.5 
 
 
632 aa  202  1.9999999999999998e-50  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  38.7 
 
 
541 aa  202  1.9999999999999998e-50  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1418  chemotaxis sensory transducer  40.06 
 
 
541 aa  202  1.9999999999999998e-50  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  38.75 
 
 
541 aa  202  1.9999999999999998e-50  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_43220  putative methyl-accepting chemotaxis transducer  35.35 
 
 
652 aa  201  1.9999999999999998e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.625872 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  31.73 
 
 
712 aa  201  3e-50  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_008463  PA14_55960  chemotactic transducer PctC  31.27 
 
 
632 aa  201  3e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.289325  normal 
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  42.86 
 
 
647 aa  201  3e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0861  methyl-accepting chemotaxis sensory transducer  39.15 
 
 
542 aa  201  3e-50  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3864  methyl-accepting chemotaxis protein  39.39 
 
 
568 aa  201  3.9999999999999996e-50  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4876  chemotactic transducer PctA  32.3 
 
 
629 aa  201  5e-50  Pseudomonas aeruginosa PA7  Bacteria  normal  0.647167  n/a   
 
 
-
 
NC_007492  Pfl01_0124  chemotaxis sensory transducer, Cache sensor  29.85 
 
 
626 aa  201  5e-50  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.201174  normal 
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  36.02 
 
 
552 aa  200  5e-50  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_009997  Sbal195_3742  methyl-accepting chemotaxis sensory transducer  36.12 
 
 
620 aa  201  5e-50  Shewanella baltica OS195  Bacteria  normal  normal  0.35347 
 
 
-
 
NC_008321  Shewmr4_3174  methyl-accepting chemotaxis sensory transducer  38.14 
 
 
620 aa  201  5e-50  Shewanella sp. MR-4  Bacteria  normal  0.733563  normal  0.773778 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  29.57 
 
 
712 aa  200  7e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009052  Sbal_0691  methyl-accepting chemotaxis sensory transducer  36.12 
 
 
620 aa  200  7.999999999999999e-50  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  37.54 
 
 
640 aa  200  7.999999999999999e-50  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_011663  Sbal223_3551  methyl-accepting chemotaxis sensory transducer  36.12 
 
 
620 aa  200  7.999999999999999e-50  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00183884 
 
 
-
 
NC_007492  Pfl01_4266  chemotaxis sensory transducer  32.71 
 
 
546 aa  200  7.999999999999999e-50  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.261421  normal 
 
 
-
 
NC_008322  Shewmr7_0792  methyl-accepting chemotaxis sensory transducer  35.44 
 
 
620 aa  200  7.999999999999999e-50  Shewanella sp. MR-7  Bacteria  normal  0.912748  normal  0.850506 
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  38.11 
 
 
638 aa  199  1.0000000000000001e-49  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3672  methyl-accepting chemotaxis sensory transducer  29.71 
 
 
619 aa  199  1.0000000000000001e-49  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  37.67 
 
 
541 aa  199  1.0000000000000001e-49  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
NC_007492  Pfl01_4833  chemotaxis sensory transducer  37.43 
 
 
541 aa  199  1.0000000000000001e-49  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000956827  normal  0.082646 
 
 
-
 
NC_009901  Spea_3492  methyl-accepting chemotaxis sensory transducer with Cache sensor  29.74 
 
 
626 aa  199  1.0000000000000001e-49  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2263  methyl-accepting chemotaxis sensory transducer  38.42 
 
 
541 aa  198  2.0000000000000003e-49  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4895  methyl-accepting chemotaxis sensory transducer  36.93 
 
 
739 aa  199  2.0000000000000003e-49  Pseudomonas putida F1  Bacteria  normal  0.247309  normal 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  37.57 
 
 
629 aa  199  2.0000000000000003e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  36.05 
 
 
642 aa  198  2.0000000000000003e-49  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  41.79 
 
 
572 aa  198  2.0000000000000003e-49  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  40.72 
 
 
634 aa  198  3e-49  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1672  methyl-accepting chemotaxis sensory transducer  35.29 
 
 
544 aa  198  3e-49  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4218  histidine kinase, HAMP region: chemotaxis sensory transducer  36.94 
 
 
541 aa  198  3e-49  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.599163 
 
 
-
 
NC_008577  Shewana3_0764  methyl-accepting chemotaxis sensory transducer  35.49 
 
 
620 aa  198  3e-49  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  36.84 
 
 
638 aa  197  4.0000000000000005e-49  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_008463  PA14_56000  chemotactic transducer PctA  31.45 
 
 
629 aa  197  5.000000000000001e-49  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0512673  normal 
 
 
-
 
NC_007492  Pfl01_4192  chemotaxis sensory transducer  40.44 
 
 
654 aa  197  6e-49  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0796  methyl-accepting chemotaxis sensory transducer  33.13 
 
 
620 aa  197  6e-49  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_5021  methyl-accepting chemotaxis sensory transducer  36.65 
 
 
647 aa  196  7e-49  Pseudomonas putida KT2440  Bacteria  normal  0.0828859  normal 
 
 
-
 
NC_009784  VIBHAR_06314  histidine kinase  31.62 
 
 
623 aa  196  9e-49  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_3441  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
541 aa  196  9e-49  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  37.08 
 
 
568 aa  196  9e-49  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3322  methyl-accepting chemotaxis sensory transducer  40.92 
 
 
539 aa  196  9e-49  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.910778 
 
 
-
 
NC_009784  VIBHAR_07022  histidine kinase  36.74 
 
 
553 aa  196  1e-48  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  36.34 
 
 
619 aa  196  1e-48  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_007492  Pfl01_0354  chemotaxis sensory transducer, Cache sensor  30.43 
 
 
630 aa  196  1e-48  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002443  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  34.55 
 
 
541 aa  196  1e-48  Vibrio sp. Ex25  Bacteria  unclonable  0.00000057049  n/a   
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  40.44 
 
 
634 aa  196  1e-48  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3323  methyl-accepting chemotaxis sensory transducer  40.92 
 
 
539 aa  196  1e-48  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2471  methyl-accepting chemotaxis sensory transducer  37.22 
 
 
425 aa  196  1e-48  Pseudomonas mendocina ymp  Bacteria  normal  0.817651  normal 
 
 
-
 
NC_004347  SO_1056  methyl-accepting chemotaxis protein  29.56 
 
 
630 aa  195  2e-48  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_1491  histidine kinase, HAMP region: chemotaxis sensory transducer  37.35 
 
 
539 aa  195  2e-48  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2634  histidine kinase, HAMP region: chemotaxis sensory transducer  34.43 
 
 
542 aa  195  2e-48  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.917034  normal 
 
 
-
 
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