More than 300 homologs were found in PanDaTox collection
for query gene Ssed_1002 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_1002  methyl-accepting chemotaxis protein-like protein  100 
 
 
1100 aa  2241    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3112  putative methyl-accepting chemotaxis sensory transducer  28.92 
 
 
1029 aa  319  2e-85  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0185  methyl-accepting chemotaxis protein  29.61 
 
 
770 aa  263  1e-68  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0559  methyl-accepting chemotaxis sensory transducer  32.22 
 
 
773 aa  254  5.000000000000001e-66  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  33.62 
 
 
773 aa  239  3e-61  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_007520  Tcr_0777  methyl-accepting chemotaxis sensory transducer  30.88 
 
 
712 aa  236  1.0000000000000001e-60  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3576  methyl-accepting chemotaxis sensory transducer  31.51 
 
 
772 aa  236  2.0000000000000002e-60  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0207298 
 
 
-
 
NC_011884  Cyan7425_1547  adenylate/guanylate cyclase with integral membrane sensor  33.26 
 
 
758 aa  234  6e-60  Cyanothece sp. PCC 7425  Bacteria  normal  0.592629  normal 
 
 
-
 
NC_007520  Tcr_0077  methyl-accepting chemotaxis sensory transducer  32.69 
 
 
941 aa  232  3e-59  Thiomicrospira crunogena XCL-2  Bacteria  decreased coverage  0.000232315  n/a   
 
 
-
 
NC_008700  Sama_3497  putative methyl-accepting chemotaxis sensory transducer  42.81 
 
 
860 aa  231  5e-59  Shewanella amazonensis SB2B  Bacteria  normal  0.19961  normal 
 
 
-
 
NC_009831  Ssed_0184  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  41.18 
 
 
863 aa  227  8e-58  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0164  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.18 
 
 
1123 aa  227  1e-57  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0151  methyl-accepting chemotaxis protein  40.12 
 
 
678 aa  226  1e-57  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0111  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.24 
 
 
864 aa  221  3.9999999999999997e-56  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0793  methyl-accepting chemotaxis protein  38.53 
 
 
740 aa  221  7.999999999999999e-56  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_2163  methyl-accepting chemotaxis sensory transducer  39.05 
 
 
610 aa  220  1e-55  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3105  putative methyl-accepting chemotaxis sensory transducer  39.07 
 
 
767 aa  220  1e-55  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1897  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  31.46 
 
 
1170 aa  218  5e-55  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0082  methyl-accepting chemotaxis sensory transducer  37.72 
 
 
665 aa  216  9.999999999999999e-55  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_1547  methyl-accepting chemotaxis protein  34.88 
 
 
635 aa  216  9.999999999999999e-55  Agrobacterium vitis S4  Bacteria  normal  0.0672502  n/a   
 
 
-
 
NC_007298  Daro_0729  PAS  39.59 
 
 
945 aa  213  2e-53  Dechloromonas aromatica RCB  Bacteria  normal  0.0635035  normal 
 
 
-
 
NC_007520  Tcr_0361  methyl-accepting chemotaxis sensory transducer  28.86 
 
 
601 aa  211  6e-53  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1159  methyl-accepting chemotaxis protein  32.65 
 
 
671 aa  209  2e-52  Agrobacterium vitis S4  Bacteria  normal  0.573311  n/a   
 
 
-
 
NC_012850  Rleg_0098  methyl-accepting chemotaxis sensory transducer  37.39 
 
 
665 aa  209  3e-52  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.713215  normal 
 
 
-
 
NC_008321  Shewmr4_2091  methyl-accepting chemotaxis sensory transducer  40.32 
 
 
656 aa  209  3e-52  Shewanella sp. MR-4  Bacteria  normal  normal  0.684691 
 
 
-
 
NC_008322  Shewmr7_1883  methyl-accepting chemotaxis sensory transducer  40.32 
 
 
656 aa  209  3e-52  Shewanella sp. MR-7  Bacteria  normal  normal  0.113479 
 
 
-
 
NC_008577  Shewana3_2216  methyl-accepting chemotaxis sensory transducer  40.32 
 
 
657 aa  208  4e-52  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1851  methyl-accepting chemotaxis sensory transducer  33.72 
 
 
745 aa  208  5e-52  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.195185 
 
 
-
 
NC_007520  Tcr_0574  methyl-accepting chemotaxis sensory transducer  29.38 
 
 
815 aa  207  7e-52  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5166  methyl-accepting chemotaxis sensory transducer  36.05 
 
 
669 aa  207  8e-52  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1169  methyl-accepting chemotaxis sensory transducer  33.49 
 
 
740 aa  206  1e-51  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0728  histidine kinase, HAMP region: chemotaxis sensory transducer  42.31 
 
 
792 aa  207  1e-51  Dechloromonas aromatica RCB  Bacteria  normal  0.066629  normal 
 
 
-
 
NC_010717  PXO_00054  methyl-accepting chemotaxis protein  35.92 
 
 
797 aa  206  1e-51  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.276697  n/a   
 
 
-
 
NC_004347  SO_2123  methyl-accepting chemotaxis protein  38.55 
 
 
654 aa  205  3e-51  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2362  methyl-accepting chemotaxis sensory transducer  40.38 
 
 
664 aa  205  3e-51  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2100  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.38 
 
 
665 aa  205  3e-51  Shewanella baltica OS223  Bacteria  normal  0.328344  normal 
 
 
-
 
NC_009665  Shew185_2245  methyl-accepting chemotaxis sensory transducer  38.33 
 
 
664 aa  205  3e-51  Shewanella baltica OS185  Bacteria  normal  0.232427  n/a   
 
 
-
 
NC_010506  Swoo_1055  diguanylate cyclase  30.13 
 
 
598 aa  205  4e-51  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0104  methyl-accepting chemotaxis sensory transducer  40.33 
 
 
622 aa  204  7e-51  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_02220  putative chemotaxis transducer  39.16 
 
 
679 aa  204  8e-51  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.329962  normal 
 
 
-
 
NC_009052  Sbal_2114  methyl-accepting chemotaxis sensory transducer  40.06 
 
 
657 aa  204  9e-51  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0256  chemotaxis transducer  39.16 
 
 
679 aa  204  9.999999999999999e-51  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1847  methyl-accepting chemotaxis sensory transducer  35.83 
 
 
793 aa  204  9.999999999999999e-51  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.143361  normal  0.380239 
 
 
-
 
NC_007517  Gmet_1078  methyl-accepting chemotaxis sensory transducer  41.55 
 
 
587 aa  204  9.999999999999999e-51  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_007520  Tcr_0027  methyl-accepting chemotaxis sensory transducer  30.4 
 
 
959 aa  203  9.999999999999999e-51  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0083  methyl-accepting chemotaxis sensory transducer  34.47 
 
 
665 aa  204  9.999999999999999e-51  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0972557  normal  0.565594 
 
 
-
 
NC_011071  Smal_1846  methyl-accepting chemotaxis sensory transducer  31.69 
 
 
755 aa  203  9.999999999999999e-51  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.422723  normal  0.381468 
 
 
-
 
NC_010159  YpAngola_A3774  methyl-accepting chemotaxis protein  40.55 
 
 
649 aa  202  1.9999999999999998e-50  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_0034  methyl-accepting chemotaxis sensory transducer  40.55 
 
 
649 aa  202  1.9999999999999998e-50  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.38678  n/a   
 
 
-
 
NC_009708  YpsIP31758_4122  methyl-accepting chemotaxis protein  40.55 
 
 
649 aa  202  1.9999999999999998e-50  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  40.2 
 
 
572 aa  202  3e-50  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  40.13 
 
 
585 aa  202  3.9999999999999996e-50  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  38.24 
 
 
589 aa  201  5e-50  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_007520  Tcr_1984  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  28.42 
 
 
954 aa  201  6e-50  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  39.53 
 
 
569 aa  200  1.0000000000000001e-49  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00039  chemotaxis protein  35.71 
 
 
775 aa  200  1.0000000000000001e-49  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.371493  n/a   
 
 
-
 
NC_008782  Ajs_3659  methyl-accepting chemotaxis sensory transducer  38.66 
 
 
550 aa  200  1.0000000000000001e-49  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2969  methyl-accepting chemotaxis sensory transducer  37.86 
 
 
550 aa  199  2.0000000000000003e-49  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00046  chemotaxis protein  37.46 
 
 
753 aa  199  3e-49  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4185  methyl-accepting chemotaxis sensory transducer  42.91 
 
 
579 aa  199  3e-49  Variovorax paradoxus S110  Bacteria  normal  0.356775  n/a   
 
 
-
 
NC_010002  Daci_4524  methyl-accepting chemotaxis sensory transducer  40.69 
 
 
599 aa  198  4.0000000000000005e-49  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  40.77 
 
 
586 aa  198  5.000000000000001e-49  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  39.87 
 
 
559 aa  198  6e-49  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_012880  Dd703_2108  methyl-accepting chemotaxis sensory transducer  39.1 
 
 
556 aa  197  6e-49  Dickeya dadantii Ech703  Bacteria  normal  0.0190315  n/a   
 
 
-
 
NC_010682  Rpic_0995  methyl-accepting chemotaxis sensory transducer  40.98 
 
 
621 aa  197  6e-49  Ralstonia pickettii 12J  Bacteria  normal  normal  0.203772 
 
 
-
 
NC_010552  BamMC406_4727  methyl-accepting chemotaxis sensory transducer  41.58 
 
 
517 aa  198  6e-49  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.308358 
 
 
-
 
NC_012791  Vapar_0687  methyl-accepting chemotaxis sensory transducer  41.85 
 
 
433 aa  197  7e-49  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_3481  methyl-accepting chemotaxis sensory transducer  42.66 
 
 
674 aa  197  8.000000000000001e-49  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_4123  methyl-accepting chemotaxis sensory transducer  42.66 
 
 
674 aa  197  9e-49  Acidovorax sp. JS42  Bacteria  normal  0.162807  normal  0.87643 
 
 
-
 
NC_009485  BBta_2145  methyl-accepting chemotaxis protein  40.51 
 
 
781 aa  196  1e-48  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.297887  normal 
 
 
-
 
NC_010002  Daci_5413  methyl-accepting chemotaxis sensory transducer  38.85 
 
 
464 aa  197  1e-48  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.723957 
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  40.89 
 
 
559 aa  197  1e-48  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_008752  Aave_0831  methyl-accepting chemotaxis sensory transducer  36.39 
 
 
561 aa  197  1e-48  Acidovorax citrulli AAC00-1  Bacteria  normal  0.236088  normal  0.180731 
 
 
-
 
NC_012917  PC1_0380  methyl-accepting chemotaxis sensory transducer  37.84 
 
 
539 aa  196  2e-48  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1091  methyl-accepting chemotaxis sensory transducer with Cache sensor  40.98 
 
 
618 aa  196  2e-48  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3217  methyl-accepting chemotaxis sensory transducer with Cache sensor  40.13 
 
 
584 aa  196  3e-48  Geobacter sp. M21  Bacteria  n/a    normal  0.480757 
 
 
-
 
NC_011146  Gbem_1044  methyl-accepting chemotaxis sensory transducer  41.38 
 
 
584 aa  195  3e-48  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  39.93 
 
 
583 aa  196  3e-48  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_007947  Mfla_1933  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.26 
 
 
598 aa  196  3e-48  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_2608  methyl-accepting chemotaxis protein  41.02 
 
 
655 aa  196  3e-48  Agrobacterium vitis S4  Bacteria  normal  0.445883  n/a   
 
 
-
 
NC_010551  BamMC406_0184  methyl-accepting chemotaxis sensory transducer  41.45 
 
 
648 aa  195  5e-48  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3560  methyl-accepting chemotaxis sensory transducer  37.25 
 
 
538 aa  194  6e-48  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B0881  methyl-accepting chemotaxis sensory transducer  40.13 
 
 
517 aa  194  6e-48  Burkholderia sp. 383  Bacteria  normal  normal  0.284562 
 
 
-
 
NC_010524  Lcho_1600  methyl-accepting chemotaxis sensory transducer  40.48 
 
 
594 aa  194  6e-48  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.00034667 
 
 
-
 
NC_008061  Bcen_3544  methyl-accepting chemotaxis sensory transducer  39.81 
 
 
541 aa  194  7e-48  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.256262  n/a   
 
 
-
 
NC_008543  Bcen2424_4823  methyl-accepting chemotaxis sensory transducer  39.81 
 
 
541 aa  194  7e-48  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.224381 
 
 
-
 
NC_010086  Bmul_3780  methyl-accepting chemotaxis sensory transducer  40.13 
 
 
517 aa  194  8e-48  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.0330596 
 
 
-
 
NC_007348  Reut_B5601  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.58 
 
 
551 aa  194  8e-48  Ralstonia eutropha JMP134  Bacteria  normal  0.510218  n/a   
 
 
-
 
NC_007510  Bcep18194_A3360  methyl-accepting chemotaxis sensory transducer  43.02 
 
 
655 aa  194  8e-48  Burkholderia sp. 383  Bacteria  normal  0.139099  normal 
 
 
-
 
NC_007908  Rfer_3286  methyl-accepting chemotaxis sensory transducer  37.21 
 
 
499 aa  194  8e-48  Rhodoferax ferrireducens T118  Bacteria  normal  0.729026  n/a   
 
 
-
 
NC_009436  Ent638_2100  methyl-accepting chemotaxis sensory transducer  38.19 
 
 
512 aa  194  9e-48  Enterobacter sp. 638  Bacteria  normal  0.0381834  normal 
 
 
-
 
NC_012912  Dd1591_1804  methyl-accepting chemotaxis sensory transducer  38.31 
 
 
562 aa  194  9e-48  Dickeya zeae Ech1591  Bacteria  normal  0.0522685  n/a   
 
 
-
 
NC_010515  Bcenmc03_5460  methyl-accepting chemotaxis sensory transducer  39.81 
 
 
517 aa  194  1e-47  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.601436  normal  0.166688 
 
 
-
 
NC_008390  Bamb_0171  methyl-accepting chemotaxis sensory transducer  41.09 
 
 
648 aa  194  1e-47  Burkholderia ambifaria AMMD  Bacteria  normal  0.451768  n/a   
 
 
-
 
NC_008391  Bamb_4204  methyl-accepting chemotaxis sensory transducer  41.24 
 
 
517 aa  194  1e-47  Burkholderia ambifaria AMMD  Bacteria  normal  0.305878  normal 
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  38.54 
 
 
575 aa  193  1e-47  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_010002  Daci_3786  methyl-accepting chemotaxis sensory transducer with Cache sensor  38.93 
 
 
610 aa  192  2e-47  Delftia acidovorans SPH-1  Bacteria  normal  0.0254049  normal  0.3858 
 
 
-
 
NC_010717  PXO_00043  chemotaxis protein  33.17 
 
 
705 aa  193  2e-47  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.51691  n/a   
 
 
-
 
NC_007951  Bxe_A1405  methyl-accepting chemotaxis sensory transducer  38.59 
 
 
599 aa  193  2e-47  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0931  methyl-accepting chemotaxis sensory transducer  38.08 
 
 
591 aa  193  2e-47  Acidovorax ebreus TPSY  Bacteria  normal  0.269909  n/a   
 
 
-
 
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