More than 300 homologs were found in PanDaTox collection
for query gene Ssed_0961 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008577  Shewana3_3212  methyl-accepting chemotaxis sensory transducer  65.63 
 
 
673 aa  804    Shewanella sp. ANA-3  Bacteria  normal  0.990285  normal  0.659639 
 
 
-
 
NC_009901  Spea_0859  methyl-accepting chemotaxis sensory transducer  66.52 
 
 
673 aa  860    Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1011  methyl-accepting chemotaxis sensory transducer  73.93 
 
 
675 aa  959    Shewanella woodyi ATCC 51908  Bacteria  normal  0.547128  hitchhiker  0.00024543 
 
 
-
 
NC_004347  SO_3642  methyl-accepting chemotaxis protein  64.59 
 
 
673 aa  768    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1076  methyl-accepting chemotaxis sensory transducer  64.3 
 
 
673 aa  805    Shewanella baltica OS195  Bacteria  normal  0.450868  normal 
 
 
-
 
NC_011663  Sbal223_3316  methyl-accepting chemotaxis sensory transducer  64.44 
 
 
673 aa  810    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0961  methyl-accepting chemotaxis sensory transducer  100 
 
 
675 aa  1343    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0876  methyl-accepting chemotaxis sensory transducer  70.37 
 
 
674 aa  919    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2891  chemotaxis sensory transducer  61.48 
 
 
673 aa  795    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0902  methyl-accepting chemotaxis sensory transducer  64.74 
 
 
673 aa  795    Shewanella sp. MR-4  Bacteria  normal  normal  0.73728 
 
 
-
 
NC_008700  Sama_2822  putative methyl-accepting chemotaxis sensory transducer  63.11 
 
 
673 aa  806    Shewanella amazonensis SB2B  Bacteria  normal  normal  0.428629 
 
 
-
 
NC_008322  Shewmr7_3118  methyl-accepting chemotaxis sensory transducer  64.59 
 
 
673 aa  793    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0974  methyl-accepting chemotaxis sensory transducer  64.59 
 
 
673 aa  811    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1043  methyl-accepting chemotaxis sensory transducer  64.44 
 
 
673 aa  807    Shewanella baltica OS185  Bacteria  normal  0.530938  n/a   
 
 
-
 
NC_008345  Sfri_3082  methyl-accepting chemotaxis sensory transducer  61.33 
 
 
673 aa  773    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0986  methyl-accepting chemotaxis sensory transducer  62.96 
 
 
673 aa  759    Shewanella putrefaciens CN-32  Bacteria  normal  0.603679  n/a   
 
 
-
 
NC_008228  Patl_3424  methyl-accepting chemotaxis sensory transducer  43.31 
 
 
674 aa  498  1e-139  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.560716  n/a   
 
 
-
 
NC_003910  CPS_4528  methyl-accepting chemotaxis protein  43.64 
 
 
672 aa  478  1e-133  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03417  methyl-accepting chemotaxis protein  41.08 
 
 
674 aa  452  1.0000000000000001e-126  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.617562  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  38.44 
 
 
543 aa  265  2e-69  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  43.92 
 
 
637 aa  252  2e-65  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_011138  MADE_01085  methyl-accepting chemotaxis protein  28.76 
 
 
672 aa  249  1e-64  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0241745  n/a   
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  42.99 
 
 
572 aa  249  1e-64  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  41.79 
 
 
637 aa  248  3e-64  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  44.62 
 
 
679 aa  246  9.999999999999999e-64  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  42.29 
 
 
640 aa  245  1.9999999999999999e-63  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  42 
 
 
629 aa  244  3e-63  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  42.34 
 
 
636 aa  243  7.999999999999999e-63  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  41.18 
 
 
541 aa  243  1e-62  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  39.89 
 
 
642 aa  240  6.999999999999999e-62  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_009456  VC0395_0207  methyl-accepting chemotaxis protein  31.88 
 
 
666 aa  240  6.999999999999999e-62  Vibrio cholerae O395  Bacteria  normal  0.152775  n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  30.96 
 
 
642 aa  239  2e-61  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  41.21 
 
 
674 aa  238  4e-61  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  42 
 
 
640 aa  237  5.0000000000000005e-61  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  39.37 
 
 
552 aa  236  1.0000000000000001e-60  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  35.46 
 
 
653 aa  235  2.0000000000000002e-60  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  41.11 
 
 
638 aa  233  6e-60  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  43.64 
 
 
638 aa  233  8.000000000000001e-60  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_009901  Spea_0900  methyl-accepting chemotaxis sensory transducer  41.38 
 
 
573 aa  233  1e-59  Shewanella pealeana ATCC 700345  Bacteria  normal  0.476047  n/a   
 
 
-
 
NC_007492  Pfl01_0728  chemotaxis sensory transducer  38.36 
 
 
639 aa  232  2e-59  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2638  chemotaxis sensory transducer  30.81 
 
 
675 aa  232  2e-59  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  40.68 
 
 
559 aa  231  3e-59  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5553  methyl-accepting chemotaxis protein  41.55 
 
 
640 aa  231  4e-59  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_5092  histidine kinase, HAMP region: chemotaxis sensory transducer  42.21 
 
 
640 aa  231  4e-59  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  36.87 
 
 
712 aa  230  5e-59  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  41.71 
 
 
638 aa  230  7e-59  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  37.86 
 
 
647 aa  229  1e-58  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1007  methyl-accepting chemotaxis sensory transducer  38.79 
 
 
573 aa  228  2e-58  Shewanella sediminis HAW-EB3  Bacteria  normal  0.02936  normal 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  41.44 
 
 
638 aa  228  2e-58  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  40.71 
 
 
681 aa  228  2e-58  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  37.5 
 
 
564 aa  228  2e-58  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  43.07 
 
 
638 aa  228  3e-58  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1249  methyl-accepting chemotaxis protein  41.03 
 
 
596 aa  227  6e-58  Vibrio cholerae O395  Bacteria  hitchhiker  0.000483868  n/a   
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  37.24 
 
 
634 aa  227  6e-58  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  36.34 
 
 
712 aa  226  7e-58  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_007492  Pfl01_4833  chemotaxis sensory transducer  41.99 
 
 
541 aa  226  8e-58  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000956827  normal  0.082646 
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  39.89 
 
 
634 aa  225  2e-57  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011901  Tgr7_1425  methyl-accepting chemotaxis sensory transducer  44.19 
 
 
438 aa  225  2e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0712  putative methyl-accepting chemotaxis sensory transducer  46.44 
 
 
624 aa  226  2e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  36.38 
 
 
650 aa  224  3e-57  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_011901  Tgr7_1672  methyl-accepting chemotaxis sensory transducer  39.83 
 
 
544 aa  224  3e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  38.61 
 
 
633 aa  224  4e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  37.43 
 
 
552 aa  224  4e-57  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  39.62 
 
 
634 aa  224  4e-57  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  34.86 
 
 
653 aa  224  4.9999999999999996e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_004578  PSPTO_3680  methyl-accepting chemotaxis protein  37.14 
 
 
676 aa  224  6e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  41.48 
 
 
634 aa  224  6e-57  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0922  methyl-accepting chemotaxis sensory transducer  34.82 
 
 
572 aa  223  7e-57  Shewanella loihica PV-4  Bacteria  normal  normal  0.981358 
 
 
-
 
NC_003910  CPS_3864  methyl-accepting chemotaxis protein  38.81 
 
 
568 aa  223  9.999999999999999e-57  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1124  methyl-accepting chemotaxis sensory transducer  40.58 
 
 
547 aa  222  1.9999999999999999e-56  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00163985  n/a   
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  39.55 
 
 
548 aa  222  1.9999999999999999e-56  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  37.9 
 
 
541 aa  221  3e-56  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  38.16 
 
 
713 aa  221  3.9999999999999997e-56  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_009831  Ssed_1006  methyl-accepting chemotaxis sensory transducer  41.08 
 
 
573 aa  221  3.9999999999999997e-56  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0778  methyl-accepting chemotaxis sensory transducer  42.47 
 
 
639 aa  221  5e-56  Pseudomonas putida W619  Bacteria  normal  normal  0.66043 
 
 
-
 
NC_004578  PSPTO_0466  methyl-accepting chemotaxis protein  37.04 
 
 
541 aa  220  7.999999999999999e-56  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  42.43 
 
 
646 aa  219  8.999999999999998e-56  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_002947  PP_4658  methyl-accepting chemotaxis sensory transducer  42.77 
 
 
639 aa  219  1e-55  Pseudomonas putida KT2440  Bacteria  normal  0.415489  normal 
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  38.28 
 
 
716 aa  219  1e-55  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_013457  VEA_000971  methyl-accepting chemotaxis protein  36.39 
 
 
553 aa  219  2e-55  Vibrio sp. Ex25  Bacteria  normal  0.370017  n/a   
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  35.29 
 
 
639 aa  219  2e-55  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_008463  PA14_43710  putative methyl-accepting chemotaxis transducer  39.77 
 
 
541 aa  218  2e-55  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  35.07 
 
 
541 aa  218  2.9999999999999998e-55  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_004578  PSPTO_5159  methyl-accepting chemotaxis protein  40.39 
 
 
638 aa  218  2.9999999999999998e-55  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.14 
 
 
523 aa  218  2.9999999999999998e-55  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_008345  Sfri_1215  methyl-accepting chemotaxis sensory transducer  28.9 
 
 
678 aa  218  2.9999999999999998e-55  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_4653  methyl-accepting chemotaxis sensory transducer  42.47 
 
 
639 aa  218  4e-55  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  38.7 
 
 
560 aa  217  5e-55  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_009512  Pput_4520  methyl-accepting chemotaxis sensory transducer  42.47 
 
 
639 aa  217  5e-55  Pseudomonas putida F1  Bacteria  normal  normal  0.886367 
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  36.88 
 
 
621 aa  217  5.9999999999999996e-55  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_009656  PSPA7_3666  chemotaxis transducer  38.06 
 
 
541 aa  217  7e-55  Pseudomonas aeruginosa PA7  Bacteria  normal  0.260935  n/a   
 
 
-
 
NC_009654  Mmwyl1_3948  methyl-accepting chemotaxis sensory transducer  37.6 
 
 
658 aa  216  8e-55  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  38 
 
 
541 aa  216  9.999999999999999e-55  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0732  methyl-accepting chemotaxis sensory transducer  39.6 
 
 
555 aa  216  9.999999999999999e-55  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.177926 
 
 
-
 
NC_009438  Sputcn32_1313  methyl-accepting chemotaxis sensory transducer  29.76 
 
 
675 aa  216  9.999999999999999e-55  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  38.4 
 
 
638 aa  216  9.999999999999999e-55  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_008789  Hhal_0549  methyl-accepting chemotaxis sensory transducer  39.94 
 
 
640 aa  215  1.9999999999999998e-54  Halorhodospira halophila SL1  Bacteria  normal  0.43692  n/a   
 
 
-
 
NC_009656  PSPA7_2546  putative chemotaxis transducer  40.69 
 
 
714 aa  215  1.9999999999999998e-54  Pseudomonas aeruginosa PA7  Bacteria  normal  0.410637  n/a   
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  36.32 
 
 
619 aa  214  2.9999999999999995e-54  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  40.62 
 
 
540 aa  214  2.9999999999999995e-54  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>