More than 300 homologs were found in PanDaTox collection
for query gene Sputcn32_2089 on replicon NC_009438
Organism: Shewanella putrefaciens CN-32



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009997  Sbal195_1921  nickel-dependent hydrogenase large subunit  95.41 
 
 
567 aa  1122    Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1914  nickel-dependent hydrogenase large subunit  95.24 
 
 
567 aa  1120    Shewanella baltica OS185  Bacteria  normal  0.392356  n/a   
 
 
-
 
NC_009707  JJD26997_0459  quinone-reactive Ni/Fe-hydrogenase, large subunit  55.59 
 
 
571 aa  657    Campylobacter jejuni subsp. doylei 269.97  Bacteria  unclonable  0.000000000643457  n/a   
 
 
-
 
NC_003912  CJE1402  quinone-reactive Ni/Fe-hydrogenase, large subunit  55.61 
 
 
571 aa  658    Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2098  quinone-reactive Ni/Fe hydrogenase, large subunit  96.12 
 
 
567 aa  1143    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  90.83 
 
 
568 aa  1056    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2032  nickel-dependent hydrogenase large subunit  87.46 
 
 
567 aa  1059    Shewanella pealeana ATCC 700345  Bacteria  normal  0.0709763  n/a   
 
 
-
 
NC_007575  Suden_1435  nickel-dependent hydrogenase, large subunit  61.75 
 
 
577 aa  762    Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.611833  n/a   
 
 
-
 
NC_009802  CCC13826_0100  aminodeoxychorismate lyase  56.51 
 
 
572 aa  681    Campylobacter concisus 13826  Bacteria  normal  0.0667384  n/a   
 
 
-
 
NC_012039  Cla_0713  Ni/Fe-hydrogenase, large subunit  58.25 
 
 
571 aa  682    Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2405  nickel-dependent hydrogenase large subunit  95.41 
 
 
567 aa  1122    Shewanella baltica OS223  Bacteria  normal  0.286384  hitchhiker  0.000502851 
 
 
-
 
NC_009714  CHAB381_0862  quinone-reactive Ni/Fe-hydrogenase large chain  57.09 
 
 
573 aa  691    Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2089  nickel-dependent hydrogenase, large subunit  100 
 
 
567 aa  1177    Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1821  nickel-dependent hydrogenase, large subunit  95.77 
 
 
567 aa  1139    Shewanella sp. MR-4  Bacteria  normal  0.545248  normal 
 
 
-
 
NC_008322  Shewmr7_2156  nickel-dependent hydrogenase, large subunit  95.94 
 
 
567 aa  1141    Shewanella sp. MR-7  Bacteria  normal  0.352792  normal  0.370314 
 
 
-
 
NC_008345  Sfri_2104  nickel-dependent hydrogenase, large subunit  84.98 
 
 
567 aa  1030    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_1902  quinone-reactive Ni/Fe-hydrogenase large chain  57.72 
 
 
572 aa  687    Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1888  nickel-dependent hydrogenase large subunit  95.41 
 
 
567 aa  1120    Shewanella baltica OS155  Bacteria  normal  0.261784  n/a   
 
 
-
 
NC_008577  Shewana3_1879  nickel-dependent hydrogenase, large subunit  95.94 
 
 
567 aa  1141    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008599  CFF8240_0939  quinone-reactive Ni/Fe-hydrogenase large chain  57.75 
 
 
573 aa  709    Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.0992433  n/a   
 
 
-
 
NC_009831  Ssed_1907  nickel-dependent hydrogenase, large subunit  90.12 
 
 
567 aa  1055    Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.022032 
 
 
-
 
NC_008700  Sama_1678  hydrogenase large chain  92.23 
 
 
567 aa  1096    Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_1105  nickel-dependent hydrogenase large subunit  57.51 
 
 
584 aa  706    Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_1282  quinone-reactive Ni/Fe-hydrogenase, large subunit  55.96 
 
 
571 aa  659    Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00216082  n/a   
 
 
-
 
NC_007520  Tcr_2037  nickel-dependent hydrogenase, large subunit  48.32 
 
 
568 aa  566  1e-160  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0266  nickel-dependent hydrogenase large subunit  46.98 
 
 
566 aa  514  1e-144  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.322067  normal 
 
 
-
 
NC_007519  Dde_2138  periplasmic (NiFe) hydrogenase, large subunit, isozyme 1  47.62 
 
 
568 aa  509  1e-143  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2952  nickel-dependent hydrogenase, large subunit  46.73 
 
 
546 aa  507  9.999999999999999e-143  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.437472 
 
 
-
 
NC_002939  GSU0122  nickel-dependent hydrogenase, large subunit  46.85 
 
 
564 aa  503  1e-141  Geobacter sulfurreducens PCA  Bacteria  normal  0.254382  n/a   
 
 
-
 
NC_012918  GM21_1126  Cytochrome-c3 hydrogenase  45.55 
 
 
559 aa  502  1e-141  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3136  nickel-dependent hydrogenase large subunit  45.38 
 
 
559 aa  499  1e-140  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0544  nickel-dependent hydrogenase, large subunit  46.42 
 
 
566 aa  501  1e-140  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3331  nickel-dependent hydrogenase, large subunit  45.67 
 
 
566 aa  495  1e-139  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_4306  hydrogenase 2 large subunit  45.45 
 
 
567 aa  490  1e-137  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.228665  normal 
 
 
-
 
CP001509  ECD_02870  hydrogenase 2, large subunit  45.45 
 
 
567 aa  490  1e-137  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0702  nickel-dependent hydrogenase large subunit  45.45 
 
 
567 aa  490  1e-137  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1946  nickel-dependent hydrogenase, large subunit  45.14 
 
 
560 aa  491  1e-137  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3421  hydrogenase 2 large subunit  45.45 
 
 
567 aa  490  1e-137  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3280  hydrogenase 2 large subunit  45.45 
 
 
567 aa  490  1e-137  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02819  hypothetical protein  45.45 
 
 
567 aa  490  1e-137  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0699  hydrogenase 2 large subunit  45.21 
 
 
567 aa  489  1e-137  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A3174  hydrogenase 2 large subunit  45.45 
 
 
567 aa  490  1e-137  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3463  hydrogenase 2 large subunit  45.45 
 
 
567 aa  490  1e-137  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0785  nickel-dependent hydrogenase, large subunit  44.44 
 
 
560 aa  486  1e-136  Geobacter sulfurreducens PCA  Bacteria  normal  0.433799  n/a   
 
 
-
 
NC_011205  SeD_A3495  hydrogenase 2 large subunit  44.86 
 
 
567 aa  486  1e-136  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.233634  normal 
 
 
-
 
NC_011083  SeHA_C3394  hydrogenase 2 large subunit  44.86 
 
 
567 aa  486  1e-136  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.571998 
 
 
-
 
NC_011080  SNSL254_A3400  hydrogenase 2 large subunit  44.86 
 
 
567 aa  486  1e-136  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A3329  hydrogenase 2 large subunit  44.86 
 
 
567 aa  486  1e-136  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3320  hydrogenase 2 large subunit  44.86 
 
 
567 aa  486  1e-136  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.118706  n/a   
 
 
-
 
NC_011769  DvMF_0270  nickel-dependent hydrogenase large subunit  45.25 
 
 
567 aa  483  1e-135  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.11146 
 
 
-
 
NC_009483  Gura_0873  nickel-dependent hydrogenase, large subunit  44.39 
 
 
569 aa  482  1e-135  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA0165  nickel-iron hydrogenase, large subunit  42.83 
 
 
597 aa  478  1e-134  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0497936  n/a   
 
 
-
 
NC_013173  Dbac_0766  nickel-dependent hydrogenase large subunit  44.25 
 
 
569 aa  480  1e-134  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1163  nickel-dependent hydrogenase, large subunit  43.52 
 
 
597 aa  479  1e-134  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.28682  normal 
 
 
-
 
NC_010814  Glov_2055  nickel-dependent hydrogenase large subunit  45.14 
 
 
566 aa  479  1e-134  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3404  nickel-dependent hydrogenase large subunit  44.41 
 
 
573 aa  479  1e-134  Frankia sp. EAN1pec  Bacteria  normal  0.37903  normal 
 
 
-
 
NC_008751  Dvul_1245  nickel-dependent hydrogenase, large subunit  44.88 
 
 
566 aa  481  1e-134  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.11159 
 
 
-
 
NC_011205  SeD_A1798  [Ni/Fe] hydrogenase, large subunit  42.79 
 
 
600 aa  478  1e-133  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.570579  normal 
 
 
-
 
NC_011059  Paes_0854  nickel-dependent hydrogenase large subunit  43.03 
 
 
572 aa  475  1e-133  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.255543 
 
 
-
 
NC_011094  SeSA_A1642  [Ni/Fe] hydrogenase, large subunit  42.79 
 
 
600 aa  478  1e-133  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.251142  normal 
 
 
-
 
NC_012912  Dd1591_1413  hydrogenase 2 large subunit  44.96 
 
 
568 aa  476  1e-133  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1997  uptake hydrogenase large subunit precursor  44.37 
 
 
596 aa  476  1e-133  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B1633  [Ni/Fe] hydrogenase, large subunit  42.79 
 
 
600 aa  478  1e-133  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1709  [Ni/Fe] hydrogenase large subunit  42.79 
 
 
600 aa  478  1e-133  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_1592  nickel-dependent hydrogenase large subunit  43.03 
 
 
572 aa  476  1e-133  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.663154  normal 
 
 
-
 
NC_007925  RPC_3771  nickel-dependent hydrogenase, large subunit  43.61 
 
 
597 aa  477  1e-133  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.292608  normal  0.910106 
 
 
-
 
NC_011080  SNSL254_A1650  [Ni/Fe] hydrogenase large subunit  42.79 
 
 
600 aa  478  1e-133  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009475  BBta_p0179  uptake hydrogenase large subunit  45.72 
 
 
570 aa  476  1e-133  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_0147  nickel-dependent hydrogenase large subunit  43.98 
 
 
559 aa  477  1e-133  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2531  hydrogenase 2 large subunit  44.44 
 
 
568 aa  473  1e-132  Dickeya dadantii Ech703  Bacteria  normal  0.597514  n/a   
 
 
-
 
NC_009767  Rcas_3147  nickel-dependent hydrogenase large subunit  43.35 
 
 
570 aa  474  1e-132  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0496  hydrogenase protein large subunit  43.66 
 
 
596 aa  473  1e-132  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3375  hypothetical protein  42.81 
 
 
596 aa  474  1e-132  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.281049  normal 
 
 
-
 
NC_009523  RoseRS_2320  nickel-dependent hydrogenase, large subunit  42.96 
 
 
570 aa  474  1e-132  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1861  nickel-dependent hydrogenase large subunit  43.32 
 
 
572 aa  472  1e-132  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2147  nickel-dependent hydrogenase, large subunit  43.66 
 
 
596 aa  473  1e-132  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0605986  normal  0.266797 
 
 
-
 
NC_011004  Rpal_1155  nickel-dependent hydrogenase large subunit  43.66 
 
 
597 aa  474  1e-132  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.295857  n/a   
 
 
-
 
NC_007298  Daro_3988  nickel-dependent hydrogenase, large subunit  42.83 
 
 
598 aa  471  1.0000000000000001e-131  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_3368  nickel-dependent hydrogenase large subunit  43.89 
 
 
570 aa  471  1.0000000000000001e-131  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2028  nickel-dependent hydrogenase, large subunit  43.2 
 
 
595 aa  470  1.0000000000000001e-131  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3098  nickel-dependent hydrogenase, large subunit  43.05 
 
 
597 aa  471  1.0000000000000001e-131  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_3286  [Ni/Fe] hydrogenase, large subunit  43.65 
 
 
585 aa  467  9.999999999999999e-131  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2884  nickel-dependent hydrogenase large subunit  43.65 
 
 
585 aa  467  9.999999999999999e-131  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.308731  normal 
 
 
-
 
NC_009675  Anae109_3520  nickel-dependent hydrogenase large subunit  44.33 
 
 
567 aa  466  9.999999999999999e-131  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_0973  nickel-dependent hydrogenase, large subunit  42.81 
 
 
572 aa  466  9.999999999999999e-131  Chlorobium phaeobacteroides DSM 266  Bacteria  decreased coverage  0.000120136  n/a   
 
 
-
 
NC_010803  Clim_0856  nickel-dependent hydrogenase large subunit  42.64 
 
 
572 aa  465  9.999999999999999e-131  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1447  hydrogenase large chain  42.51 
 
 
572 aa  462  1e-129  Chlorobium luteolum DSM 273  Bacteria  normal  0.333249  normal 
 
 
-
 
NC_010627  Bphy_7264  nickel-dependent hydrogenase large subunit  41.15 
 
 
596 aa  463  1e-129  Burkholderia phymatum STM815  Bacteria  normal  normal  0.340015 
 
 
-
 
NC_009441  Fjoh_3907  nickel-dependent hydrogenase, large subunit  44.25 
 
 
578 aa  461  9.999999999999999e-129  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1297  nickel-dependent hydrogenase, large subunit  42.83 
 
 
619 aa  461  9.999999999999999e-129  Cupriavidus metallidurans CH34  Bacteria  normal  0.0139093  normal 
 
 
-
 
NC_008576  Mmc1_2503  nickel-dependent hydrogenase, large subunit  43.3 
 
 
567 aa  461  9.999999999999999e-129  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.153272 
 
 
-
 
NC_011901  Tgr7_1266  Ni-Fe hydrogenase large chain  43.99 
 
 
583 aa  461  9.999999999999999e-129  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1162  nickel-dependent hydrogenase, large subunit  42.39 
 
 
596 aa  456  1e-127  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.122791  n/a   
 
 
-
 
NC_008009  Acid345_4240  nickel-dependent hydrogenase, large subunit  42.49 
 
 
563 aa  455  1e-127  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0337  nickel-dependent hydrogenase, large subunit  42.88 
 
 
598 aa  458  1e-127  Acidiphilium cryptum JF-5  Bacteria  normal  0.0168031  n/a   
 
 
-
 
NC_009675  Anae109_0523  nickel-dependent hydrogenase large subunit  44.44 
 
 
578 aa  452  1.0000000000000001e-126  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3971  nickel-dependent hydrogenase, large subunit  44.02 
 
 
570 aa  452  1.0000000000000001e-126  Dechloromonas aromatica RCB  Bacteria  normal  0.533836  normal 
 
 
-
 
NC_007908  Rfer_4091  nickel-dependent hydrogenase, large subunit  44.6 
 
 
568 aa  452  1e-125  Rhodoferax ferrireducens T118  Bacteria  normal  0.0995107  n/a   
 
 
-
 
NC_009720  Xaut_2174  nickel-dependent hydrogenase large subunit  43.49 
 
 
604 aa  451  1e-125  Xanthobacter autotrophicus Py2  Bacteria  hitchhiker  0.0021467  normal  0.160198 
 
 
-
 
NC_011883  Ddes_1038  nickel-dependent hydrogenase large subunit  43.01 
 
 
558 aa  450  1e-125  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.368471  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>