More than 300 homologs were found in PanDaTox collection
for query gene Snas_3474 on replicon NC_013947
Organism: Stackebrandtia nassauensis DSM 44728



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013947  Snas_3474  nickel-dependent hydrogenase large subunit  100 
 
 
432 aa  880    Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.455292  normal 
 
 
-
 
NC_009077  Mjls_3427  nickel-dependent hydrogenase, large subunit  63.23 
 
 
430 aa  527  1e-148  Mycobacterium sp. JLS  Bacteria  normal  normal  0.260108 
 
 
-
 
NC_008146  Mmcs_3416  nickel-dependent hydrogenase, large subunit  63.23 
 
 
430 aa  526  1e-148  Mycobacterium sp. MCS  Bacteria  normal  0.291194  n/a   
 
 
-
 
NC_008705  Mkms_3479  nickel-dependent hydrogenase, large subunit  63.23 
 
 
430 aa  526  1e-148  Mycobacterium sp. KMS  Bacteria  normal  0.441341  normal  0.0523033 
 
 
-
 
NC_013501  Rmar_2590  nickel-dependent hydrogenase large subunit  58.04 
 
 
433 aa  497  1e-139  Rhodothermus marinus DSM 4252  Bacteria  normal  0.282401  n/a   
 
 
-
 
NC_014165  Tbis_1858  nickel-dependent hydrogenase large subunit  60.74 
 
 
428 aa  494  9.999999999999999e-139  Thermobispora bispora DSM 43833  Bacteria  normal  0.940457  normal 
 
 
-
 
NC_011901  Tgr7_1138  nickel-dependent hydrogenase large subunit  55.14 
 
 
431 aa  479  1e-134  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2660  Coenzyme F420 hydrogenase  53.29 
 
 
433 aa  468  1.0000000000000001e-131  Cyanothece sp. PCC 7425  Bacteria  normal  0.041142  normal 
 
 
-
 
NC_013595  Sros_4826  nickel-dependent hydrogenase large subunit  57.54 
 
 
428 aa  469  1.0000000000000001e-131  Streptosporangium roseum DSM 43021  Bacteria  normal  0.106762  normal 
 
 
-
 
NC_008578  Acel_1019  nickel-dependent hydrogenase, large subunit  57.51 
 
 
431 aa  470  1.0000000000000001e-131  Acidothermus cellulolyticus 11B  Bacteria  normal  hitchhiker  0.00653003 
 
 
-
 
NC_007777  Francci3_4496  nickel-dependent hydrogenase, large subunit  55.35 
 
 
430 aa  461  9.999999999999999e-129  Frankia sp. CcI3  Bacteria  normal  0.401222  normal 
 
 
-
 
NC_010581  Bind_0507  nickel-dependent hydrogenase large subunit  53.76 
 
 
429 aa  441  9.999999999999999e-123  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_04400  Soluble nickel-dependent hydrogenase, large subunit, HoxH  54.05 
 
 
419 aa  435  1e-121  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1055  nickel-dependent hydrogenase large subunit  48.5 
 
 
432 aa  371  1e-101  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.620596 
 
 
-
 
NC_011761  AFE_0937  [NiFe] hydrogenase, alpha subunit, putative  49.05 
 
 
422 aa  369  1e-101  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.952693  n/a   
 
 
-
 
NC_007404  Tbd_1263  hypothetical protein  46.95 
 
 
433 aa  363  4e-99  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.321319  normal 
 
 
-
 
NC_006369  lpl2387  hypothetical protein  41.26 
 
 
430 aa  332  7.000000000000001e-90  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp2532  hypothetical protein  40.42 
 
 
430 aa  327  3e-88  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013158  Huta_2605  nickel-dependent hydrogenase large subunit  33.96 
 
 
439 aa  248  2e-64  Halorhabdus utahensis DSM 12940  Archaea  normal  0.0537031  n/a   
 
 
-
 
NC_009483  Gura_1122  nickel-dependent hydrogenase, large subunit  35.9 
 
 
425 aa  246  6.999999999999999e-64  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0884  nickel-dependent hydrogenase, large subunit  35.58 
 
 
432 aa  244  3e-63  Magnetococcus sp. MC-1  Bacteria  normal  0.912975  normal  0.251676 
 
 
-
 
NC_013204  Elen_1256  nickel-dependent hydrogenase large subunit  36.07 
 
 
430 aa  244  3e-63  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013926  Aboo_0080  nickel-dependent hydrogenase large subunit  30.81 
 
 
421 aa  241  2e-62  Aciduliprofundum boonei T469  Archaea  normal  0.303597  n/a   
 
 
-
 
NC_011059  Paes_1929  nickel-dependent hydrogenase large subunit  33.33 
 
 
425 aa  238  2e-61  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_2499  nickel-dependent hydrogenase large subunit  34.04 
 
 
424 aa  234  3e-60  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_2097  nickel-dependent hydrogenase large subunit  33.41 
 
 
424 aa  227  2e-58  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_2132  nickel-dependent hydrogenase large subunit  32.77 
 
 
425 aa  227  4e-58  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.0448433  normal  0.0283043 
 
 
-
 
NC_007514  Cag_0245  hydrogenase/sulfur reductase, alpha subunit  34.44 
 
 
426 aa  223  7e-57  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.392685  n/a   
 
 
-
 
NC_008639  Cpha266_2169  nickel-dependent hydrogenase, large subunit  33.17 
 
 
424 aa  219  7e-56  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2249  nickel-dependent hydrogenase large subunit  36.71 
 
 
423 aa  213  5.999999999999999e-54  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_1968  nickel-dependent hydrogenase large subunit  34.98 
 
 
423 aa  203  5e-51  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1553  nickel-dependent hydrogenase large subunit  28.3 
 
 
479 aa  166  1.0000000000000001e-39  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009051  Memar_1007  nickel-dependent hydrogenase, large subunit  29.24 
 
 
455 aa  161  2e-38  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_011146  Gbem_3884  nickel-dependent hydrogenase large subunit  28.12 
 
 
473 aa  160  3e-38  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3972  nickel-dependent hydrogenase large subunit  28.12 
 
 
473 aa  160  3e-38  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000529156 
 
 
-
 
NC_007517  Gmet_3320  nickel-dependent hydrogenase, large subunit  27.69 
 
 
473 aa  155  1e-36  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0078  nickel-dependent hydrogenase large subunit  27.53 
 
 
474 aa  153  5.9999999999999996e-36  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_553  nickel-dependent hydrogenase, group 3, large subunit  27.94 
 
 
479 aa  148  1.0000000000000001e-34  Dehalococcoides sp. VS  Bacteria  normal  0.0139726  n/a   
 
 
-
 
NC_009635  Maeo_0097  nickel-dependent hydrogenase large subunit  25.94 
 
 
475 aa  148  2.0000000000000003e-34  Methanococcus aeolicus Nankai-3  Archaea  normal  0.325648  n/a   
 
 
-
 
NC_010814  Glov_2791  nickel-dependent hydrogenase large subunit  29.4 
 
 
482 aa  147  5e-34  Geobacter lovleyi SZ  Bacteria  normal  0.119602  n/a   
 
 
-
 
NC_002936  DET0615  hydrogenase, group 3, VhuA subunit, putative  28 
 
 
479 aa  146  6e-34  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0588  F420-non-reducing hydrogenase subunit A  27.68 
 
 
479 aa  146  7.0000000000000006e-34  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000204108  n/a   
 
 
-
 
NC_013158  Huta_2102  nickel-dependent hydrogenase large subunit  27.79 
 
 
472 aa  146  9e-34  Halorhabdus utahensis DSM 12940  Archaea  normal  0.782605  n/a   
 
 
-
 
NC_002939  GSU2419  nickel-dependent hydrogenase, large subunit  27.25 
 
 
473 aa  144  4e-33  Geobacter sulfurreducens PCA  Bacteria  normal  0.954862  n/a   
 
 
-
 
NC_002977  MCA0114  NAD-reducing hydrogenase, beta subunit  28.48 
 
 
494 aa  142  1.9999999999999998e-32  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3537  nickel-dependent hydrogenase, large subunit  27.94 
 
 
469 aa  139  7e-32  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0996  nickel-dependent hydrogenase large subunit  29.81 
 
 
418 aa  139  1e-31  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_008554  Sfum_2716  nickel-dependent hydrogenase, large subunit  25.75 
 
 
479 aa  137  3.0000000000000003e-31  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.892044  normal 
 
 
-
 
NC_008554  Sfum_3954  nickel-dependent hydrogenase, large subunit  26.93 
 
 
449 aa  137  4e-31  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.644029 
 
 
-
 
NC_009634  Mevan_0070  nickel-dependent hydrogenase large subunit  26.15 
 
 
471 aa  137  4e-31  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_010524  Lcho_1459  nickel-dependent hydrogenase large subunit  27.53 
 
 
504 aa  136  8e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.720227 
 
 
-
 
NC_013385  Adeg_2013  nickel-dependent hydrogenase large subunit  27.83 
 
 
487 aa  135  9.999999999999999e-31  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0652  F420-non-reducing hydrogenase subunit A  26.8 
 
 
471 aa  134  1.9999999999999998e-30  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0531  putative nickel-dependent hydrogenase, large subunit  28.54 
 
 
504 aa  135  1.9999999999999998e-30  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1525  nickel-dependent hydrogenase, large subunit  27.16 
 
 
488 aa  134  1.9999999999999998e-30  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00000894187  hitchhiker  0.00486844 
 
 
-
 
NC_011831  Cagg_2476  nickel-dependent hydrogenase large subunit  28.19 
 
 
473 aa  134  1.9999999999999998e-30  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.795621  normal  0.410999 
 
 
-
 
NC_008709  Ping_1215  nickel-dependent hydrogenase, large subunit  26.34 
 
 
499 aa  135  1.9999999999999998e-30  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0417903 
 
 
-
 
NC_008554  Sfum_2221  nickel-dependent hydrogenase, large subunit  27.29 
 
 
482 aa  134  3e-30  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.794889  normal  0.78316 
 
 
-
 
NC_007517  Gmet_1113  nickel-dependent hydrogenase, large subunit  29.81 
 
 
476 aa  133  6e-30  Geobacter metallireducens GS-15  Bacteria  normal  0.301961  normal 
 
 
-
 
NC_010571  Oter_3680  nickel-dependent hydrogenase large subunit  27.56 
 
 
509 aa  132  9e-30  Opitutus terrae PB90-1  Bacteria  normal  0.0782936  normal  0.503756 
 
 
-
 
NC_011662  Tmz1t_2250  nickel-dependent hydrogenase large subunit  26.84 
 
 
488 aa  131  3e-29  Thauera sp. MZ1T  Bacteria  normal  0.0169608  n/a   
 
 
-
 
NC_009767  Rcas_1368  nickel-dependent hydrogenase large subunit  28.79 
 
 
475 aa  130  4.0000000000000003e-29  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009637  MmarC7_0969  nickel-dependent hydrogenase large subunit  27.98 
 
 
418 aa  130  5.0000000000000004e-29  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_009523  RoseRS_3539  nickel-dependent hydrogenase, large subunit  28.32 
 
 
474 aa  130  5.0000000000000004e-29  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009975  MmarC6_0977  nickel-dependent hydrogenase large subunit  28.4 
 
 
418 aa  130  6e-29  Methanococcus maripaludis C6  Archaea  normal  0.390644  n/a   
 
 
-
 
NC_009635  Maeo_1215  nickel-dependent hydrogenase large subunit  27.47 
 
 
418 aa  130  6e-29  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1712  F420-non-reducing hydrogenase subunit A  28.16 
 
 
418 aa  129  9.000000000000001e-29  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2555  NAD-reducing hydrogenase HoxS beta subunit  29.65 
 
 
476 aa  128  2.0000000000000002e-28  Synechococcus elongatus PCC 7942  Bacteria  normal  0.148056  normal 
 
 
-
 
NC_007614  Nmul_A1673  nickel-dependent hydrogenase, large subunit  25.94 
 
 
493 aa  128  2.0000000000000002e-28  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.521628  n/a   
 
 
-
 
NC_008554  Sfum_1791  hydrogen dehydrogenase  24.39 
 
 
449 aa  128  2.0000000000000002e-28  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4160  nickel-dependent hydrogenase large subunit  27.79 
 
 
474 aa  127  5e-28  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011726  PCC8801_0095  nickel-dependent hydrogenase large subunit  26.2 
 
 
474 aa  125  1e-27  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0092  nickel-dependent hydrogenase large subunit  26.26 
 
 
474 aa  125  1e-27  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.643449 
 
 
-
 
NC_007298  Daro_0982  nickel-dependent hydrogenase, large subunit  25.22 
 
 
487 aa  125  2e-27  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_4043  nickel-dependent hydrogenase large subunit  27.11 
 
 
473 aa  125  2e-27  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.0198059 
 
 
-
 
NC_007908  Rfer_3855  nickel-dependent hydrogenase, large subunit  27.67 
 
 
507 aa  124  3e-27  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2718  NAD-reducing hydrogenase, beta subunit  28.57 
 
 
478 aa  123  6e-27  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2748  nickel-dependent hydrogenase large subunit  26.58 
 
 
488 aa  121  1.9999999999999998e-26  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_4661  nickel-dependent hydrogenase, large subunit  26.68 
 
 
487 aa  121  1.9999999999999998e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1651  nickel-dependent hydrogenase, large subunit  27.29 
 
 
485 aa  122  1.9999999999999998e-26  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4113  nickel-dependent hydrogenase, large subunit  25.79 
 
 
489 aa  121  1.9999999999999998e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0509028  normal  0.183384 
 
 
-
 
NC_009135  MmarC5_0649  coenzyme F420-reducing hydrogenase, alpha subunit  26.61 
 
 
410 aa  120  3.9999999999999996e-26  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009634  Mevan_0073  nickel-dependent hydrogenase large subunit  27.23 
 
 
410 aa  119  9.999999999999999e-26  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4292  nickel-dependent hydrogenase large subunit  28.03 
 
 
494 aa  117  3.9999999999999997e-25  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2258  nickel-dependent hydrogenase large subunit  26.48 
 
 
486 aa  115  1.0000000000000001e-24  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_4314  nickel-dependent hydrogenase large subunit  27.72 
 
 
494 aa  115  1.0000000000000001e-24  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_4162  nickel-dependent hydrogenase, large subunit  28.14 
 
 
494 aa  110  3e-23  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0906302  n/a   
 
 
-
 
NC_009675  Anae109_4306  nickel-dependent hydrogenase large subunit  26.88 
 
 
498 aa  107  6e-22  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.891144  normal  0.552071 
 
 
-
 
NC_007355  Mbar_A0452  coenzyme F420-reducing hydrogenase, alpha subunit  24.54 
 
 
456 aa  105  2e-21  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_009051  Memar_2174  nickel-dependent hydrogenase, large subunit  24.69 
 
 
455 aa  103  6e-21  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_007796  Mhun_2332  nickel-dependent hydrogenase, large subunit  25.11 
 
 
469 aa  102  1e-20  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009712  Mboo_2023  nickel-dependent hydrogenase, large subunit  26.3 
 
 
438 aa  98.6  2e-19  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.113638 
 
 
-
 
NC_008751  Dvul_1248  nickel-dependent hydrogenase, large subunit  25.42 
 
 
488 aa  96.3  1e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.210122 
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  22.74 
 
 
514 aa  90.9  4e-17  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_008942  Mlab_0015  coenzyme F420-reducing hydrogenase, alpha subunit  32 
 
 
455 aa  87  5e-16  Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_010424  Daud_1042  nickel-dependent hydrogenase, large subunit  24.22 
 
 
485 aa  84.7  0.000000000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.90765  n/a   
 
 
-
 
NC_009635  Maeo_1045  nickel-dependent hydrogenase large subunit  22.94 
 
 
385 aa  84.3  0.000000000000004  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_011769  DvMF_0273  nickel-dependent hydrogenase large subunit  23.83 
 
 
488 aa  83.6  0.000000000000006  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.328721 
 
 
-
 
NC_009712  Mboo_0479  coenzyme F420 hydrogenase  23.42 
 
 
437 aa  83.2  0.000000000000009  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.654505  normal 
 
 
-
 
NC_007355  Mbar_A2287  coenzyme F420 hydrogenase, subunit alpha  29.24 
 
 
456 aa  81.6  0.00000000000003  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.304616 
 
 
-
 
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