235 homologs were found in PanDaTox collection
for query gene Smed_4822 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009620  Smed_4822  cyclic nucleotide-binding protein  100 
 
 		 243 aa  492  9.999999999999999e-139  Sinorhizobium medicae WSM419  Bacteria  normal  0.379105  normal  0.123433 
 
 
-
 
NC_004311  BRA0414  Crp/FNR family transcriptional regulator  40.17 
 
 		 252 aa  188  5e-47  Brucella suis 1330  Bacteria  normal  0.766284  n/a   
 
 
-
 
NC_009504  BOV_A0357  Crp/FNR family transcriptional regulator  40.17 
 
 		 252 aa  188  5e-47  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  41.67 
 
 		 252 aa  186  2e-46  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  39.08 
 
 		 253 aa  179  2.9999999999999997e-44  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  39.91 
 
 		 235 aa  179  2.9999999999999997e-44  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  38.46 
 
 		 253 aa  173  1.9999999999999998e-42  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  39.55 
 
 		 243 aa  148  9e-35  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  35.9 
 
 		 243 aa  142  7e-33  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.173486 
 
 
-
 
NC_008254  Meso_2575  Crp/FNR family transcriptional regulator  38.92 
 
 		 240 aa  137  1e-31  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  35.78 
 
 		 246 aa  130  2.0000000000000002e-29  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  36.63 
 
 		 246 aa  129  4.0000000000000003e-29  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  32.71 
 
 		 250 aa  127  1.0000000000000001e-28  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  34.55 
 
 		 384 aa  121  9.999999999999999e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  35 
 
 		 384 aa  120  3e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  32.73 
 
 		 376 aa  109  4.0000000000000004e-23  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal  1 
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  32.09 
 
 		 250 aa  109  4.0000000000000004e-23  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  33.18 
 
 		 255 aa  108  1e-22  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  32.77 
 
 		 247 aa  107  2e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  34.85 
 
 		 281 aa  105  9e-22  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  35.64 
 
 		 252 aa  104  1e-21  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  30.93 
 
 		 249 aa  104  2e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  31.36 
 
 		 298 aa  102  5e-21  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal  1 
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  32.3 
 
 		 247 aa  102  5e-21  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  33.48 
 
 		 268 aa  100  2e-20  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_009511  Swit_0953  CRP/FNR family transcriptional regulator  32.27 
 
 		 254 aa  100  2e-20  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  30.21 
 
 		 250 aa  100  3e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal  1 
 
 
-
 
NC_010505  Mrad2831_2447  cyclic nucleotide-binding protein  35.1 
 
 		 255 aa  98.2  1e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  30.57 
 
 		 248 aa  97.1  2e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  29.44 
 
 		 263 aa  96.7  3e-19  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  31.09 
 
 		 243 aa  96.3  4e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_0983  Crp/FNR family transcriptional regulator  29.68 
 
 		 245 aa  96.3  4e-19  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  32.31 
 
 		 259 aa  95.9  5e-19  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  31.86 
 
 		 247 aa  95.9  6e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  31.22 
 
 		 249 aa  94.7  1e-18  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  31.44 
 
 		 259 aa  93.6  2e-18  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.996332 
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  31.44 
 
 		 259 aa  93.6  2e-18  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.161686 
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  29.36 
 
 		 244 aa  93.6  3e-18  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal  1 
 
 
-
 
NC_009485  BBta_6056  Crp/FNR family transcriptional regulator  30 
 
 		 241 aa  92.8  4e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  28.51 
 
 		 259 aa  92.4  6e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  hitchhiker  0.00010652 
 
 
-
 
NC_009485  BBta_2391  CRP/FNR family transcriptional regulator  31.28 
 
 		 274 aa  92.4  6e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  31.19 
 
 		 299 aa  92  7e-18  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  28.63 
 
 		 317 aa  92  7e-18  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal  1 
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  29.28 
 
 		 307 aa  92  8e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  28 
 
 		 276 aa  91.7  9e-18  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  28.71 
 
 		 267 aa  90.1  3e-17  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  32.23 
 
 		 249 aa  89.4  4e-17  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  32.23 
 
 		 249 aa  89.7  4e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.371562 
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  29.59 
 
 		 315 aa  89.4  5e-17  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  28.44 
 
 		 244 aa  88.6  8e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  28.44 
 
 		 244 aa  88.6  9e-17  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal  1 
 
 
-
 
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  29.41 
 
 		 234 aa  88.6  9e-17  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.0477074 
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  29.49 
 
 		 236 aa  87.4  2e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  27.69 
 
 		 241 aa  87  2e-16  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  29.02 
 
 		 256 aa  87.4  2e-16  Acidovorax citrulli AAC00-1  Bacteria  normal  1  normal  0.858211 
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  29.41 
 
 		 244 aa  87  3e-16  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  29.36 
 
 		 281 aa  86.7  3e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.999867 
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  31.91 
 
 		 255 aa  86.3  4e-16  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  28.64 
 
 		 243 aa  85.9  5e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  hitchhiker  0.000118444 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  30.77 
 
 		 246 aa  85.5  6e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  28.57 
 
 		 254 aa  85.1  8e-16  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009636  Smed_2400  CRP/FNR family transcriptional regulator  29.08 
 
 		 250 aa  85.1  9e-16  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.0375093 
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  29.95 
 
 		 225 aa  84.7  0.000000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.0893417 
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  32.44 
 
 		 246 aa  85.1  0.000000000000001  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  31.28 
 
 		 262 aa  84  0.000000000000002  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  0.586423 
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  26.16 
 
 		 246 aa  83.6  0.000000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal  1 
 
 
-
 
NC_012850  Rleg_1153  transcriptional regulator, Crp/Fnr family  30.96 
 
 		 250 aa  82.8  0.000000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  29.9 
 
 		 250 aa  80.9  0.00000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  29.65 
 
 		 255 aa  80.9  0.00000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_011004  Rpal_3741  transcriptional regulator, Crp/Fnr family  33.33 
 
 		 242 aa  80.9  0.00000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  28.89 
 
 		 246 aa  80.5  0.00000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  27.92 
 
 		 230 aa  80.1  0.00000000000003  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_2609  Crp/FNR family transcriptional regulator  29.59 
 
 		 293 aa  80.1  0.00000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.325512  normal  1 
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  30.24 
 
 		 257 aa  78.6  0.00000000000008  Methylobacterium sp. 4-46  Bacteria  normal  1  decreased coverage  0.00106309 
 
 
-
 
NC_007802  Jann_2207  cyclic nucleotide-binding domain-containing protein  26.37 
 
 		 260 aa  77  0.0000000000002  Jannaschia sp. CCS1  Bacteria  normal  0.363509  normal  1 
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  27.72 
 
 		 257 aa  77.4  0.0000000000002  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  27.84 
 
 		 239 aa  76.6  0.0000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal  1 
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  27.52 
 
 		 263 aa  77  0.0000000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal  1 
 
 
-
 
NC_008686  Pden_2108  CRP/FNR family transcriptional regulator  35.47 
 
 		 243 aa  76.3  0.0000000000004  Paracoccus denitrificans PD1222  Bacteria  normal  0.819689  normal  0.0771917 
 
 
-
 
NC_011893  Mnod_8765  putative transcriptional regulator, Crp/Fnr family  27.75 
 
 		 244 aa  75.9  0.0000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474033  n/a   
 
 
-
 
NC_011894  Mnod_6130  putative transcriptional regulator, Crp/Fnr family  27.23 
 
 		 244 aa  74.3  0.000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_0955  CRP/FNR family transcriptional regulator  33.72 
 
 		 226 aa  72.8  0.000000000004  Sphingomonas wittichii RW1  Bacteria  normal  0.869769  normal  1 
 
 
-
 
NC_007778  RPB_4068  Crp/FNR family transcriptional regulator  26.39 
 
 		 247 aa  72  0.000000000008  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.936766  normal  1 
 
 
-
 
NC_007958  RPD_3805  cyclic nucleotide-binding  26.01 
 
 		 263 aa  70.5  0.00000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  27.84 
 
 		 249 aa  68.9  0.00000000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009049  Rsph17029_2934  cyclic nucleotide-binding protein  28.43 
 
 		 249 aa  68.9  0.00000000007  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_3832  transcriptional regulator, Crp/Fnr family  30 
 
 		 245 aa  68.6  0.00000000008  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007493  RSP_1275  Crp/Fnr family transcriptional regulator  29.26 
 
 		 249 aa  68.2  0.0000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011004  Rpal_1184  transcriptional regulator, Crp/Fnr family  28.65 
 
 		 243 aa  67.8  0.0000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_5597  putative transcriptional regulator, Crp/Fnr family  29.67 
 
 		 246 aa  67.4  0.0000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0675352  n/a   
 
 
-
 
NC_009467  Acry_3214  CRP/FNR family transcriptional regulator  26.84 
 
 		 230 aa  66.6  0.0000000003  Acidiphilium cryptum JF-5  Bacteria  normal  0.939046  n/a   
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  27.7 
 
 		 235 aa  64.7  0.000000001  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  32.32 
 
 		 208 aa  63.5  0.000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  29.82 
 
 		 236 aa  60.5  0.00000002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_009952  Dshi_0447  transcriptional regulator  28.16 
 
 		 262 aa  60.5  0.00000002  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00494896  normal  1 
 
 
-
 
NC_008048  Sala_0394  cyclic nucleotide-binding protein  25.7 
 
 		 236 aa  58.9  0.00000007  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0638348  normal  0.718832 
 
 
-
 
NC_008228  Patl_2085  Crp/FNR family transcriptional regulator  25.27 
 
 		 264 aa  58.9  0.00000007  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_5658  cyclic nucleotide-binding protein  25.31 
 
 		 245 aa  58.2  0.0000001  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  31.29 
 
 		 228 aa  57  0.0000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_007802  Jann_3568  cyclic nucleotide-binding domain-containing protein  26.34 
 
 		 242 aa  57  0.0000002  Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
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